data_6U9O
#
_model_server_result.job_id            mh8b2Q1mQynHwsyWvlOyqw 
_model_server_result.datetime_utc      '2024-11-05 01:19:51' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6u9o 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":605}' 
#
_entry.id    6U9O 
#
_exptl.entry_id    6U9O 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6U9O 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6U9O 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 U N N 
? 5 Z N N 
? 5 EA N N 
? 5 JA N N 
? 5 OA N N 
? 5 TA N N 
? 5 YA N N 
? 5 DB N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 372 n n 
PA O2A NAD sing 373 n n 
PA O5B NAD sing 374 n n 
PA O3 NAD sing 375 n n 
O2A HOA2 NAD sing 376 n n 
O5B C5B NAD sing 377 n n 
C5B C4B NAD sing 378 n n 
C5B H51A NAD sing 379 n n 
C5B H52A NAD sing 380 n n 
C4B O4B NAD sing 381 n n 
C4B C3B NAD sing 382 n n 
C4B H4B NAD sing 383 n n 
O4B C1B NAD sing 384 n n 
C3B O3B NAD sing 385 n n 
C3B C2B NAD sing 386 n n 
C3B H3B NAD sing 387 n n 
O3B HO3A NAD sing 388 n n 
C2B O2B NAD sing 389 n n 
C2B C1B NAD sing 390 n n 
C2B H2B NAD sing 391 n n 
O2B HO2A NAD sing 392 n n 
C1B N9A NAD sing 393 n n 
C1B H1B NAD sing 394 n n 
N9A C8A NAD sing 395 n y 
N9A C4A NAD sing 396 n y 
C8A N7A NAD doub 397 n y 
C8A H8A NAD sing 398 n n 
N7A C5A NAD sing 399 n y 
C5A C6A NAD sing 400 n y 
C5A C4A NAD doub 401 n y 
C6A N6A NAD sing 402 n n 
C6A N1A NAD doub 403 n y 
N6A H61A NAD sing 404 n n 
N6A H62A NAD sing 405 n n 
N1A C2A NAD sing 406 n y 
C2A N3A NAD doub 407 n y 
C2A H2A NAD sing 408 n n 
N3A C4A NAD sing 409 n y 
O3 PN NAD sing 410 n n 
PN O1N NAD doub 411 n n 
PN O2N NAD sing 412 n n 
PN O5D NAD sing 413 n n 
O5D C5D NAD sing 414 n n 
C5D C4D NAD sing 415 n n 
C5D H51N NAD sing 416 n n 
C5D H52N NAD sing 417 n n 
C4D O4D NAD sing 418 n n 
C4D C3D NAD sing 419 n n 
C4D H4D NAD sing 420 n n 
O4D C1D NAD sing 421 n n 
C3D O3D NAD sing 422 n n 
C3D C2D NAD sing 423 n n 
C3D H3D NAD sing 424 n n 
O3D HO3N NAD sing 425 n n 
C2D O2D NAD sing 426 n n 
C2D C1D NAD sing 427 n n 
C2D H2D NAD sing 428 n n 
O2D HO2N NAD sing 429 n n 
C1D N1N NAD sing 430 n n 
C1D H1D NAD sing 431 n n 
N1N C2N NAD sing 432 n y 
N1N C6N NAD doub 433 n y 
C2N C3N NAD doub 434 n y 
C2N H2N NAD sing 435 n n 
C3N C7N NAD sing 436 n n 
C3N C4N NAD sing 437 n y 
C7N O7N NAD doub 438 n n 
C7N N7N NAD sing 439 n n 
N7N H71N NAD sing 440 n n 
N7N H72N NAD sing 441 n n 
C4N C5N NAD doub 442 n y 
C4N H4N NAD sing 443 n n 
C5N C6N NAD sing 444 n y 
C5N H5N NAD sing 445 n n 
C6N H6N NAD sing 446 n n 
#
_atom_sites.entry_id                     6U9O 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 2 GTP A 1 601 517 GTP GTP . 
R 2 GTP A 1 602 518 GTP GTP . 
S 3 ATP A 1 603 519 ATP ATP . 
T 4 IMP A 1 604 603 IMP IMP . 
U 5 NAD A 1 605 701 NAD NAD . 
V 2 GTP B 1 601 517 GTP GTP . 
W 2 GTP B 1 602 518 GTP GTP . 
X 3 ATP B 1 603 519 ATP ATP . 
Y 4 IMP B 1 604 603 IMP IMP . 
Z 5 NAD B 1 605 701 NAD NAD . 
AA 2 GTP C 1 601 517 GTP GTP . 
BA 2 GTP C 1 602 518 GTP GTP . 
CA 3 ATP C 1 603 519 ATP ATP . 
DA 4 IMP C 1 604 603 IMP IMP . 
EA 5 NAD C 1 605 701 NAD NAD . 
FA 2 GTP D 1 601 517 GTP GTP . 
GA 2 GTP D 1 602 518 GTP GTP . 
HA 3 ATP D 1 603 519 ATP ATP . 
IA 4 IMP D 1 604 603 IMP IMP . 
JA 5 NAD D 1 605 701 NAD NAD . 
KA 2 GTP E 1 601 517 GTP GTP . 
LA 2 GTP E 1 602 518 GTP GTP . 
MA 3 ATP E 1 603 519 ATP ATP . 
NA 4 IMP E 1 604 603 IMP IMP . 
OA 5 NAD E 1 605 701 NAD NAD . 
PA 2 GTP F 1 601 517 GTP GTP . 
QA 2 GTP F 1 602 518 GTP GTP . 
RA 3 ATP F 1 603 519 ATP ATP . 
SA 4 IMP F 1 604 603 IMP IMP . 
TA 5 NAD F 1 605 701 NAD NAD . 
UA 2 GTP G 1 601 517 GTP GTP . 
VA 2 GTP G 1 602 518 GTP GTP . 
WA 3 ATP G 1 603 519 ATP ATP . 
XA 4 IMP G 1 604 603 IMP IMP . 
YA 5 NAD G 1 605 701 NAD NAD . 
ZA 2 GTP H 1 601 517 GTP GTP . 
AB 2 GTP H 1 602 518 GTP GTP . 
BB 3 ATP H 1 603 519 ATP ATP . 
CB 4 IMP H 1 604 603 IMP IMP . 
DB 5 NAD H 1 605 701 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . Z 5 203.328 164.584 188.246 1 143.42 ? PA NAD 605 B 1 
HETATM 2 O O1A NAD . . . Z 5 203.595 165.942 188.845 1 143.42 ? O1A NAD 605 B 1 
HETATM 3 O O2A NAD . . . Z 5 204.024 164.481 186.908 1 143.42 ? O2A NAD 605 B 1 
HETATM 4 O O5B NAD . . . Z 5 203.867 163.394 189.254 1 143.42 ? O5B NAD 605 B 1 
HETATM 5 C C5B NAD . . . Z 5 203.558 162.073 188.907 1 143.42 ? C5B NAD 605 B 1 
HETATM 6 C C4B NAD . . . Z 5 203.044 161.308 190.113 1 143.42 ? C4B NAD 605 B 1 
HETATM 7 O O4B NAD . . . Z 5 204.294 160.802 191 1 143.42 ? O4B NAD 605 B 1 
HETATM 8 C C3B NAD . . . Z 5 202.287 162.072 190.846 1 143.42 ? C3B NAD 605 B 1 
HETATM 9 O O3B NAD . . . Z 5 200.941 161.441 190.979 1 143.42 ? O3B NAD 605 B 1 
HETATM 10 C C2B NAD . . . Z 5 202.938 162.167 192.235 1 143.42 ? C2B NAD 605 B 1 
HETATM 11 O O2B NAD . . . Z 5 202.123 161.589 193.15 1 143.42 ? O2B NAD 605 B 1 
HETATM 12 C C1B NAD . . . Z 5 204.266 161.395 192.159 1 143.42 ? C1B NAD 605 B 1 
HETATM 13 N N9A NAD . . . Z 5 205.389 162.345 192.275 1 143.42 ? N9A NAD 605 B 1 
HETATM 14 C C8A NAD . . . Z 5 205.575 163.66 192.332 1 143.42 ? C8A NAD 605 B 1 
HETATM 15 N N7A NAD . . . Z 5 206.891 163.859 192.438 1 143.42 ? N7A NAD 605 B 1 
HETATM 16 C C5A NAD . . . Z 5 207.494 162.665 192.447 1 143.42 ? C5A NAD 605 B 1 
HETATM 17 C C6A NAD . . . Z 5 208.814 162.308 192.535 1 143.42 ? C6A NAD 605 B 1 
HETATM 18 N N6A NAD . . . Z 5 210.085 162.987 192.654 1 143.42 ? N6A NAD 605 B 1 
HETATM 19 N N1A NAD . . . Z 5 209.16 161.034 192.523 1 143.42 ? N1A NAD 605 B 1 
HETATM 20 C C2A NAD . . . Z 5 208.215 160.073 192.42 1 143.42 ? C2A NAD 605 B 1 
HETATM 21 N N3A NAD . . . Z 5 206.915 160.422 192.334 1 143.42 ? N3A NAD 605 B 1 
HETATM 22 C C4A NAD . . . Z 5 206.563 161.717 192.347 1 143.42 ? C4A NAD 605 B 1 
HETATM 23 O O3 NAD . . . Z 5 201.712 164.386 188.038 1 143.42 ? O3 NAD 605 B 1 
HETATM 24 P PN NAD . . . Z 5 200.582 165.019 189.049 1 143.42 ? PN NAD 605 B 1 
HETATM 25 O O1N NAD . . . Z 5 201.212 165.375 190.373 1 143.42 ? O1N NAD 605 B 1 
HETATM 26 O O2N NAD . . . Z 5 199.483 164.008 189.255 1 143.42 ? O2N NAD 605 B 1 
HETATM 27 O O5D NAD . . . Z 5 199.967 166.365 188.326 1 143.42 ? O5D NAD 605 B 1 
HETATM 28 C C5D NAD . . . Z 5 200.476 166.679 187.063 1 143.42 ? C5D NAD 605 B 1 
HETATM 29 C C4D NAD . . . Z 5 199.62 167.753 186.427 1 143.42 ? C4D NAD 605 B 1 
HETATM 30 O O4D NAD . . . Z 5 198.061 167.386 186.619 1 143.42 ? O4D NAD 605 B 1 
HETATM 31 C C3D NAD . . . Z 5 199.828 168.891 187.031 1 143.42 ? C3D NAD 605 B 1 
HETATM 32 O O3D NAD . . . Z 5 200.527 169.835 186.108 1 143.42 ? O3D NAD 605 B 1 
HETATM 33 C C2D NAD . . . Z 5 198.447 169.466 187.383 1 143.42 ? C2D NAD 605 B 1 
HETATM 34 O O2D NAD . . . Z 5 198.343 170.722 186.886 1 143.42 ? O2D NAD 605 B 1 
HETATM 35 C C1D NAD . . . Z 5 197.437 168.525 186.7 1 143.42 ? C1D NAD 605 B 1 
HETATM 36 N N1N NAD . . . Z 5 196.233 168.359 187.532 1 143.42 ? N1N NAD 605 B 1 
HETATM 37 C C2N NAD . . . Z 5 195.673 169.421 188.15 1 143.42 ? C2N NAD 605 B 1 
HETATM 38 C C3N NAD . . . Z 5 194.545 169.23 188.929 1 143.42 ? C3N NAD 605 B 1 
HETATM 39 C C7N NAD . . . Z 5 193.893 170.411 189.632 1 143.42 ? C7N NAD 605 B 1 
HETATM 40 O O7N NAD . . . Z 5 194.488 171.424 189.756 1 143.42 ? O7N NAD 605 B 1 
HETATM 41 N N7N NAD . . . Z 5 192.535 170.294 190.139 1 143.42 ? N7N NAD 605 B 1 
HETATM 42 C C4N NAD . . . Z 5 194.014 167.995 189.073 1 143.42 ? C4N NAD 605 B 1 
HETATM 43 C C5N NAD . . . Z 5 194.57 166.937 188.441 1 143.42 ? C5N NAD 605 B 1 
HETATM 44 C C6N NAD . . . Z 5 195.701 167.128 187.667 1 143.42 ? C6N NAD 605 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    36 
_model_server_stats.query_time_ms           286 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           44 
#