data_6U9Q # _model_server_result.job_id SAEIRPrOr4si2XFQ9KHmig _model_server_result.datetime_utc '2024-11-21 14:31:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u9q # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1201}' # _entry.id 6U9Q # _exptl.entry_id 6U9Q _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 24.305 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'MAGNESIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 129.73 _cell.angle_gamma 90 _cell.entry_id 6U9Q _cell.length_a 101 _cell.length_b 60.16 _cell.length_c 75.79 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U9Q _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 19 A CYS 744 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 A SG CYS 22 A CYS 747 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc3 A NE2 HIS 35 A HIS 760 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc4 A NE2 HIS 39 A HIS 764 1_555 D ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? metalc ? metalc5 A SG CYS 47 A CYS 772 1_555 E ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc6 A SG CYS 50 A CYS 775 1_555 E ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.286 ? metalc ? metalc7 A NE2 HIS 63 A HIS 788 1_555 E ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? metalc ? metalc8 A NE2 HIS 67 A HIS 792 1_555 E ZN ZN . A ZN 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc9 A SG CYS 77 A CYS 802 1_555 F ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.289 ? metalc ? metalc10 A SG CYS 80 A CYS 805 1_555 F ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc11 A NE2 HIS 93 A HIS 818 1_555 F ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc12 A NE2 HIS 98 A HIS 823 1_555 F ZN ZN . A ZN 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc13 J O HOH . A HOH 1120 1_555 I MG MG . C MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.607 ? metalc ? metalc14 J O HOH . A HOH 1125 1_555 I MG MG . C MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.692 ? metalc ? metalc15 C OP2 DG 5 C DG 5 1_555 I MG MG . C MG 1201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.862 ? hydrog WATSON-CRICK hydrog1 B N3 DC 1 B DC 1 1_555 C N1 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 B N4 DC 1 B DC 1 1_555 C O6 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 B O2 DC 1 B DC 1 1_555 C N2 DG 12 C DG 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 B N1 DA 2 B DA 2 1_555 C N3 DT 11 C DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 B N6 DA 2 B DA 2 1_555 C O4 DT 11 C DT 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog6 B N3 DT 3 B DT 3 1_555 C N1 DA 10 C DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 B O4 DT 3 B DT 3 1_555 C N6 DA 10 C DA 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 B N3 DT 4 B DT 4 1_555 C N1 DA 9 C DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog9 B O4 DT 4 B DT 4 1_555 C N6 DA 9 C DA 9 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog10 B N1 DG 5 B DG 5 1_555 C N3 DC 8 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 B N2 DG 5 B DG 5 1_555 C O2 DC 8 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 B O6 DG 5 B DG 5 1_555 C N4 DC 8 C DC 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 B N1 DG 6 B DG 6 1_555 C N3 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 B N2 DG 6 B DG 6 1_555 C O2 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 B O6 DG 6 B DG 6 1_555 C N4 DC 7 C DC 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog16 B N3 DT 7 B DT 7 1_555 C N1 DA 6 C DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog17 B O4 DT 7 B DT 7 1_555 C N6 DA 6 C DA 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 B N3 DC 8 B DC 8 1_555 C N1 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 B N4 DC 8 B DC 8 1_555 C O6 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 B O2 DC 8 B DC 8 1_555 C N2 DG 5 C DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 B N1 DA 9 B DA 9 1_555 C N3 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 B N6 DA 9 B DA 9 1_555 C O4 DT 4 C DT 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 B N1 DA 10 B DA 10 1_555 C N3 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 B N6 DA 10 B DA 10 1_555 C O4 DT 3 C DT 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 B N1 DG 11 B DG 11 1_555 C N3 DC 2 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 B N2 DG 11 B DG 11 1_555 C O2 DC 2 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 B O6 DG 11 B DG 11 1_555 C N4 DC 2 C DC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 B N3 DC 12 B DC 12 1_555 C N1 DG 1 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 B N4 DC 12 B DC 12 1_555 C O6 DG 1 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 B O2 DC 12 B DC 12 1_555 C N2 DG 1 C DG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'Mg 2' _chem_comp.formula_weight 24.305 _chem_comp.id MG _chem_comp.mon_nstd_flag . _chem_comp.name 'MAGNESIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6U9Q _atom_sites.fract_transf_matrix[1][1] 0.009901 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008229 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016622 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 ZN A 1 1001 1001 ZN ZN . E 4 ZN A 1 1002 1002 ZN ZN . F 4 ZN A 1 1003 1003 ZN ZN . G 5 PO4 A 1 1004 1101 PO4 PO4 . H 5 PO4 A 1 1005 1102 PO4 PO4 . I 6 MG C 1 1201 1201 MG MG . J 7 HOH A 1 1101 37 HOH HOH . J 7 HOH A 2 1102 57 HOH HOH . J 7 HOH A 3 1103 72 HOH HOH . J 7 HOH A 4 1104 91 HOH HOH . J 7 HOH A 5 1105 30 HOH HOH . J 7 HOH A 6 1106 53 HOH HOH . J 7 HOH A 7 1107 44 HOH HOH . J 7 HOH A 8 1108 81 HOH HOH . J 7 HOH A 9 1109 60 HOH HOH . J 7 HOH A 10 1110 12 HOH HOH . J 7 HOH A 11 1111 14 HOH HOH . J 7 HOH A 12 1112 15 HOH HOH . J 7 HOH A 13 1113 84 HOH HOH . J 7 HOH A 14 1114 105 HOH HOH . J 7 HOH A 15 1115 18 HOH HOH . J 7 HOH A 16 1116 6 HOH HOH . J 7 HOH A 17 1117 31 HOH HOH . J 7 HOH A 18 1118 19 HOH HOH . J 7 HOH A 19 1119 23 HOH HOH . J 7 HOH A 20 1120 8 HOH HOH . J 7 HOH A 21 1121 107 HOH HOH . J 7 HOH A 22 1122 4 HOH HOH . J 7 HOH A 23 1123 22 HOH HOH . J 7 HOH A 24 1124 13 HOH HOH . J 7 HOH A 25 1125 66 HOH HOH . J 7 HOH A 26 1126 35 HOH HOH . J 7 HOH A 27 1127 56 HOH HOH . J 7 HOH A 28 1128 95 HOH HOH . J 7 HOH A 29 1129 83 HOH HOH . J 7 HOH A 30 1130 39 HOH HOH . J 7 HOH A 31 1131 3 HOH HOH . J 7 HOH A 32 1132 97 HOH HOH . J 7 HOH A 33 1133 26 HOH HOH . J 7 HOH A 34 1134 20 HOH HOH . J 7 HOH A 35 1135 58 HOH HOH . J 7 HOH A 36 1136 25 HOH HOH . J 7 HOH A 37 1137 27 HOH HOH . J 7 HOH A 38 1138 36 HOH HOH . J 7 HOH A 39 1139 46 HOH HOH . J 7 HOH A 40 1140 49 HOH HOH . J 7 HOH A 41 1141 86 HOH HOH . J 7 HOH A 42 1142 59 HOH HOH . J 7 HOH A 43 1143 21 HOH HOH . J 7 HOH A 44 1144 42 HOH HOH . J 7 HOH A 45 1145 88 HOH HOH . J 7 HOH A 46 1146 43 HOH HOH . J 7 HOH A 47 1147 29 HOH HOH . J 7 HOH A 48 1148 90 HOH HOH . J 7 HOH A 49 1149 85 HOH HOH . J 7 HOH A 50 1150 41 HOH HOH . J 7 HOH A 51 1151 68 HOH HOH . J 7 HOH A 52 1152 102 HOH HOH . J 7 HOH A 53 1153 98 HOH HOH . J 7 HOH A 54 1154 99 HOH HOH . J 7 HOH A 55 1155 9 HOH HOH . J 7 HOH A 56 1156 104 HOH HOH . J 7 HOH A 57 1157 100 HOH HOH . J 7 HOH A 58 1158 108 HOH HOH . J 7 HOH A 59 1159 79 HOH HOH . J 7 HOH A 60 1160 94 HOH HOH . J 7 HOH A 61 1161 106 HOH HOH . J 7 HOH A 62 1162 61 HOH HOH . J 7 HOH A 63 1163 80 HOH HOH . J 7 HOH A 64 1164 63 HOH HOH . K 7 HOH B 1 101 82 HOH HOH . K 7 HOH B 2 102 48 HOH HOH . K 7 HOH B 3 103 24 HOH HOH . K 7 HOH B 4 104 34 HOH HOH . K 7 HOH B 5 105 2 HOH HOH . K 7 HOH B 6 106 69 HOH HOH . K 7 HOH B 7 107 33 HOH HOH . K 7 HOH B 8 108 50 HOH HOH . K 7 HOH B 9 109 38 HOH HOH . K 7 HOH B 10 110 87 HOH HOH . K 7 HOH B 11 111 51 HOH HOH . K 7 HOH B 12 112 7 HOH HOH . K 7 HOH B 13 113 103 HOH HOH . K 7 HOH B 14 114 32 HOH HOH . K 7 HOH B 15 115 45 HOH HOH . K 7 HOH B 16 116 47 HOH HOH . K 7 HOH B 17 117 10 HOH HOH . K 7 HOH B 18 118 54 HOH HOH . K 7 HOH B 19 119 76 HOH HOH . K 7 HOH B 20 120 73 HOH HOH . K 7 HOH B 21 121 65 HOH HOH . K 7 HOH B 22 122 17 HOH HOH . K 7 HOH B 23 123 67 HOH HOH . K 7 HOH B 24 124 40 HOH HOH . K 7 HOH B 25 125 74 HOH HOH . K 7 HOH B 26 126 93 HOH HOH . L 7 HOH C 1 1301 71 HOH HOH . L 7 HOH C 2 1302 5 HOH HOH . L 7 HOH C 3 1303 1 HOH HOH . L 7 HOH C 4 1304 28 HOH HOH . L 7 HOH C 5 1305 96 HOH HOH . L 7 HOH C 6 1306 11 HOH HOH . L 7 HOH C 7 1307 77 HOH HOH . L 7 HOH C 8 1308 78 HOH HOH . L 7 HOH C 9 1309 62 HOH HOH . L 7 HOH C 10 1310 55 HOH HOH . L 7 HOH C 11 1311 92 HOH HOH . L 7 HOH C 12 1312 109 HOH HOH . L 7 HOH C 13 1313 89 HOH HOH . L 7 HOH C 14 1314 64 HOH HOH . L 7 HOH C 15 1315 52 HOH HOH . L 7 HOH C 16 1316 70 HOH HOH . L 7 HOH C 17 1317 101 HOH HOH . L 7 HOH C 18 1318 75 HOH HOH . L 7 HOH C 19 1319 16 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol MG _atom_site.label_atom_id MG _atom_site.label_comp_id MG _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id I _atom_site.label_entity_id 6 _atom_site.Cartn_x 17.695 _atom_site.Cartn_y 47.717 _atom_site.Cartn_z 16.617 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 52.36 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id MG _atom_site.auth_comp_id MG _atom_site.auth_seq_id 1201 _atom_site.auth_asym_id C _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 1 #