data_6U9W # _model_server_result.job_id 1M-6WvHrvhCYFDfvGts18A _model_server_result.datetime_utc '2024-12-01 13:32:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6u9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":701}' # _entry.id 6U9W # _exptl.entry_id 6U9W _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 65.409 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ZINC ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6U9W _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6U9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 J N N ? 3 K N N ? 3 U N N ? 3 V N N ? 3 GA N N ? 3 HA N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n D NAG 1 D 1 NAG A 706 NAG 2 n D NAG 2 D 2 NAG A 707 NAG 2 n E NAG 1 E 1 NAG A 708 NAG 2 n E NAG 2 E 2 NAG A 709 NAG 2 n F NAG 1 F 1 NAG B 706 NAG 2 n F NAG 2 F 2 NAG B 707 NAG 2 n G NAG 1 G 1 NAG B 708 NAG 2 n G NAG 2 G 2 NAG B 709 NAG 2 n H NAG 1 H 1 NAG C 706 NAG 2 n H NAG 2 H 2 NAG C 707 NAG 2 n I NAG 1 I 1 NAG C 708 NAG 2 n I NAG 2 I 2 NAG C 709 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 119 A CYS 119 1_555 A SG CYS 168 A CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf2 A SG CYS 216 A CYS 216 1_555 A SG CYS 226 A CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 A SG CYS 260 A CYS 260 1_555 A SG CYS 269 A CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf4 B SG CYS 119 B CYS 119 1_555 B SG CYS 168 B CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf5 B SG CYS 216 B CYS 216 1_555 B SG CYS 226 B CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf6 B SG CYS 260 B CYS 260 1_555 B SG CYS 269 B CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf7 C SG CYS 119 C CYS 119 1_555 C SG CYS 168 C CYS 168 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf8 C SG CYS 216 C CYS 216 1_555 C SG CYS 226 C CYS 226 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf9 C SG CYS 260 C CYS 260 1_555 C SG CYS 269 C CYS 269 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? covale ? covale1 A ND2 ASN 187 A ASN 187 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale2 A ND2 ASN 202 A ASN 202 1_555 M C1 NAG . A NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.499 ? covale ? covale3 A ND2 ASN 213 A ASN 213 1_555 N C1 NAG . A NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale4 A ND2 ASN 241 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale5 A OG SER 360 A SER 360 1_555 P C1 PLM . A PLM 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale6 A SG CYS 362 A CYS 362 1_555 Q C1 PLM . A PLM 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? covale ? covale7 A SG CYS 363 A CYS 363 1_555 R C1 PLM . A PLM 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? covale ? covale8 A SG CYS 374 A CYS 374 1_555 S C1 PLM . A PLM 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.828 ? covale ? covale9 B ND2 ASN 187 B ASN 187 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.49 ? covale ? covale10 B ND2 ASN 202 B ASN 202 1_555 X C1 NAG . B NAG 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.501 ? covale ? covale11 B ND2 ASN 213 B ASN 213 1_555 Y C1 NAG . B NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? covale ? covale12 B ND2 ASN 241 B ASN 241 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale13 B OG SER 360 B SER 360 1_555 AA C1 PLM . B PLM 711 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale14 B SG CYS 362 B CYS 362 1_555 BA C1 PLM . B PLM 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? covale ? covale15 B SG CYS 363 B CYS 363 1_555 CA C1 PLM . B PLM 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.814 ? covale ? covale16 B SG CYS 374 B CYS 374 1_555 DA C1 PLM . B PLM 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? covale ? covale17 C ND2 ASN 187 C ASN 187 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale18 C ND2 ASN 202 C ASN 202 1_555 JA C1 NAG . C NAG 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.503 ? covale ? covale19 C ND2 ASN 213 C ASN 213 1_555 KA C1 NAG . C NAG 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.496 ? covale ? covale20 C ND2 ASN 241 C ASN 241 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.432 ? covale ? covale21 C OG SER 360 C SER 360 1_555 MA C1 PLM . C PLM 712 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.431 ? covale ? covale22 C SG CYS 362 C CYS 362 1_555 NA C1 PLM . C PLM 713 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.817 ? covale ? covale23 C SG CYS 363 C CYS 363 1_555 OA C1 PLM . C PLM 714 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.82 ? covale ? covale24 C SG CYS 374 C CYS 374 1_555 PA C1 PLM . C PLM 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.827 ? covale ? covale25 D O4 NAG . D NAG 1 1_555 D C1 NAG . D NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale26 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.45 ? covale ? covale27 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale28 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.446 ? covale ? covale29 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale30 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.451 ? metalc ? metalc1 A SG CYS 477 A CYS 477 1_555 K ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc2 A SG CYS 479 A CYS 479 1_555 J ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? metalc ? metalc3 A SG CYS 479 A CYS 479 1_555 K ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc4 A SG CYS 482 A CYS 482 1_555 K ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc5 A SG CYS 498 A CYS 498 1_555 K ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc6 A SG CYS 499 A CYS 499 1_555 J ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc7 A SG CYS 506 A CYS 506 1_555 J ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? metalc ? metalc8 A SG CYS 572 A CYS 572 1_555 J ZN ZN . A ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.352 ? metalc ? metalc9 B SG CYS 477 B CYS 477 1_555 V ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc10 B SG CYS 479 B CYS 479 1_555 U ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.386 ? metalc ? metalc11 B SG CYS 479 B CYS 479 1_555 V ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc12 B SG CYS 482 B CYS 482 1_555 V ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc13 B SG CYS 498 B CYS 498 1_555 V ZN ZN . B ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc14 B SG CYS 499 B CYS 499 1_555 U ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc15 B SG CYS 506 B CYS 506 1_555 U ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc16 B SG CYS 572 B CYS 572 1_555 U ZN ZN . B ZN 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.355 ? metalc ? metalc17 C SG CYS 477 C CYS 477 1_555 HA ZN ZN . C ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.312 ? metalc ? metalc18 C SG CYS 479 C CYS 479 1_555 GA ZN ZN . C ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.385 ? metalc ? metalc19 C SG CYS 479 C CYS 479 1_555 HA ZN ZN . C ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.32 ? metalc ? metalc20 C SG CYS 482 C CYS 482 1_555 HA ZN ZN . C ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.319 ? metalc ? metalc21 C SG CYS 498 C CYS 498 1_555 HA ZN ZN . C ZN 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.351 ? metalc ? metalc22 C SG CYS 499 C CYS 499 1_555 GA ZN ZN . C ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.33 ? metalc ? metalc23 C SG CYS 506 C CYS 506 1_555 GA ZN ZN . C ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.323 ? metalc ? metalc24 C SG CYS 572 C CYS 572 1_555 GA ZN ZN . C ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.354 ? # _chem_comp.formula 'Zn 2' _chem_comp.formula_weight 65.409 _chem_comp.id ZN _chem_comp.mon_nstd_flag . _chem_comp.name 'ZINC ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6U9W _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code J 3 ZN A 1 701 650 ZN ZN . K 3 ZN A 1 702 651 ZN ZN . L 4 GDP A 1 703 701 GDP GDP . M 5 NAG A 1 704 704 NAG NAG . N 5 NAG A 1 705 705 NAG NAG . O 6 Q3G A 1 710 800 Q3G LIG . P 7 PLM A 1 711 900 PLM P1L . Q 7 PLM A 1 712 901 PLM P1L . R 7 PLM A 1 713 902 PLM P1L . S 7 PLM A 1 714 903 PLM P1L . T 8 ATP A 1 715 700 ATP ATP . U 3 ZN B 1 701 650 ZN ZN . V 3 ZN B 1 702 651 ZN ZN . W 4 GDP B 1 703 701 GDP GDP . X 5 NAG B 1 704 704 NAG NAG . Y 5 NAG B 1 705 705 NAG NAG . Z 6 Q3G B 1 710 800 Q3G LIG . AA 7 PLM B 1 711 900 PLM P1L . BA 7 PLM B 1 712 901 PLM P1L . CA 7 PLM B 1 713 902 PLM P1L . DA 7 PLM B 1 714 903 PLM P1L . EA 8 ATP B 1 715 700 ATP ATP . FA 8 ATP C 1 701 700 ATP ATP . GA 3 ZN C 1 702 650 ZN ZN . HA 3 ZN C 1 703 651 ZN ZN . IA 4 GDP C 1 704 701 GDP GDP . JA 5 NAG C 1 705 704 NAG NAG . KA 5 NAG C 1 706 705 NAG NAG . LA 6 Q3G C 1 711 800 Q3G LIG . MA 7 PLM C 1 712 900 PLM P1L . NA 7 PLM C 1 713 901 PLM P1L . OA 7 PLM C 1 714 902 PLM P1L . PA 7 PLM C 1 715 903 PLM P1L . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol ZN _atom_site.label_atom_id ZN _atom_site.label_comp_id ZN _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 3 _atom_site.Cartn_x 184.27 _atom_site.Cartn_y 195.08 _atom_site.Cartn_z 116.906 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 78.46 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id ZN _atom_site.auth_comp_id ZN _atom_site.auth_seq_id 701 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 297 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 1 #