data_6UA2 # _model_server_result.job_id wUwdiXisHoFFVU-LYWZ0Bg _model_server_result.datetime_utc '2024-10-20 20:40:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ua2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"WA","auth_seq_id":605}' # _entry.id 6UA2 # _exptl.entry_id 6UA2 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UA2 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UA2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 U N N ? 5 Z N N ? 5 DA N N ? 5 HA N N ? 5 MA N N ? 5 RA N N ? 5 WA N N ? 5 ZA N N # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 372 n n PA O2A NAD sing 373 n n PA O5B NAD sing 374 n n PA O3 NAD sing 375 n n O2A HOA2 NAD sing 376 n n O5B C5B NAD sing 377 n n C5B C4B NAD sing 378 n n C5B H51A NAD sing 379 n n C5B H52A NAD sing 380 n n C4B O4B NAD sing 381 n n C4B C3B NAD sing 382 n n C4B H4B NAD sing 383 n n O4B C1B NAD sing 384 n n C3B O3B NAD sing 385 n n C3B C2B NAD sing 386 n n C3B H3B NAD sing 387 n n O3B HO3A NAD sing 388 n n C2B O2B NAD sing 389 n n C2B C1B NAD sing 390 n n C2B H2B NAD sing 391 n n O2B HO2A NAD sing 392 n n C1B N9A NAD sing 393 n n C1B H1B NAD sing 394 n n N9A C8A NAD sing 395 n y N9A C4A NAD sing 396 n y C8A N7A NAD doub 397 n y C8A H8A NAD sing 398 n n N7A C5A NAD sing 399 n y C5A C6A NAD sing 400 n y C5A C4A NAD doub 401 n y C6A N6A NAD sing 402 n n C6A N1A NAD doub 403 n y N6A H61A NAD sing 404 n n N6A H62A NAD sing 405 n n N1A C2A NAD sing 406 n y C2A N3A NAD doub 407 n y C2A H2A NAD sing 408 n n N3A C4A NAD sing 409 n y O3 PN NAD sing 410 n n PN O1N NAD doub 411 n n PN O2N NAD sing 412 n n PN O5D NAD sing 413 n n O5D C5D NAD sing 414 n n C5D C4D NAD sing 415 n n C5D H51N NAD sing 416 n n C5D H52N NAD sing 417 n n C4D O4D NAD sing 418 n n C4D C3D NAD sing 419 n n C4D H4D NAD sing 420 n n O4D C1D NAD sing 421 n n C3D O3D NAD sing 422 n n C3D C2D NAD sing 423 n n C3D H3D NAD sing 424 n n O3D HO3N NAD sing 425 n n C2D O2D NAD sing 426 n n C2D C1D NAD sing 427 n n C2D H2D NAD sing 428 n n O2D HO2N NAD sing 429 n n C1D N1N NAD sing 430 n n C1D H1D NAD sing 431 n n N1N C2N NAD sing 432 n y N1N C6N NAD doub 433 n y C2N C3N NAD doub 434 n y C2N H2N NAD sing 435 n n C3N C7N NAD sing 436 n n C3N C4N NAD sing 437 n y C7N O7N NAD doub 438 n n C7N N7N NAD sing 439 n n N7N H71N NAD sing 440 n n N7N H72N NAD sing 441 n n C4N C5N NAD doub 442 n y C4N H4N NAD sing 443 n n C5N C6N NAD sing 444 n y C5N H5N NAD sing 445 n n C6N H6N NAD sing 446 n n # _atom_sites.entry_id 6UA2 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 GTP A 1 601 517 GTP GTP . R 2 GTP A 1 602 518 GTP GTP . S 3 ATP A 1 603 519 ATP ATP . T 4 IMP A 1 604 603 IMP IMP . U 5 NAD A 1 605 701 NAD NAD . V 2 GTP B 1 601 517 GTP GTP . W 2 GTP B 1 602 518 GTP GTP . X 3 ATP B 1 603 519 ATP ATP . Y 4 IMP B 1 604 603 IMP IMP . Z 5 NAD B 1 605 701 NAD NAD . AA 3 ATP C 1 601 517 ATP ATP . BA 3 ATP C 1 602 518 ATP ATP . CA 4 IMP C 1 603 603 IMP IMP . DA 5 NAD C 1 604 701 NAD NAD . EA 3 ATP C 1 605 517 ATP ATP . FA 3 ATP D 1 601 518 ATP ATP . GA 4 IMP D 1 602 603 IMP IMP . HA 5 NAD D 1 603 701 NAD NAD . IA 2 GTP E 1 601 517 GTP GTP . JA 2 GTP E 1 602 518 GTP GTP . KA 3 ATP E 1 603 519 ATP ATP . LA 4 IMP E 1 604 603 IMP IMP . MA 5 NAD E 1 605 701 NAD NAD . NA 2 GTP F 1 601 517 GTP GTP . OA 2 GTP F 1 602 518 GTP GTP . PA 3 ATP F 1 603 519 ATP ATP . QA 4 IMP F 1 604 603 IMP IMP . RA 5 NAD F 1 605 701 NAD NAD . SA 3 ATP G 1 601 517 ATP ATP . TA 3 ATP G 1 602 517 ATP ATP . UA 3 ATP G 1 603 518 ATP ATP . VA 4 IMP G 1 604 603 IMP IMP . WA 5 NAD G 1 605 701 NAD NAD . XA 3 ATP H 1 601 518 ATP ATP . YA 4 IMP H 1 602 603 IMP IMP . ZA 5 NAD H 1 603 701 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . WA 5 171.923 132.955 142.324 1 217.59 ? PA NAD 605 G 1 HETATM 2 O O1A NAD . . . WA 5 171.676 134.166 141.461 1 217.59 ? O1A NAD 605 G 1 HETATM 3 O O2A NAD . . . WA 5 170.657 132.142 142.383 1 217.59 ? O2A NAD 605 G 1 HETATM 4 O O5B NAD . . . WA 5 173.182 132.053 141.761 1 217.59 ? O5B NAD 605 G 1 HETATM 5 C C5B NAD . . . WA 5 174.067 131.551 142.728 1 217.59 ? C5B NAD 605 G 1 HETATM 6 C C4B NAD . . . WA 5 175.462 132.164 142.597 1 217.59 ? C4B NAD 605 G 1 HETATM 7 O O4B NAD . . . WA 5 176.588 131.046 142.276 1 217.59 ? O4B NAD 605 G 1 HETATM 8 C C3B NAD . . . WA 5 175.535 133.047 141.642 1 217.59 ? C3B NAD 605 G 1 HETATM 9 O O3B NAD . . . WA 5 175.986 134.345 142.223 1 217.59 ? O3B NAD 605 G 1 HETATM 10 C C2B NAD . . . WA 5 176.568 132.524 140.626 1 217.59 ? C2B NAD 605 G 1 HETATM 11 O O2B NAD . . . WA 5 177.718 133.226 140.766 1 217.59 ? O2B NAD 605 G 1 HETATM 12 C C1B NAD . . . WA 5 176.799 131.048 140.989 1 217.59 ? C1B NAD 605 G 1 HETATM 13 N N9A NAD . . . WA 5 175.79 130.203 140.325 1 217.59 ? N9A NAD 605 G 1 HETATM 14 C C8A NAD . . . WA 5 174.775 130.362 139.483 1 217.59 ? C8A NAD 605 G 1 HETATM 15 N N7A NAD . . . WA 5 174.225 129.164 139.323 1 217.59 ? N7A NAD 605 G 1 HETATM 16 C C5A NAD . . . WA 5 174.888 128.29 140.079 1 217.59 ? C5A NAD 605 G 1 HETATM 17 C C6A NAD . . . WA 5 174.719 126.946 140.268 1 217.59 ? C6A NAD 605 G 1 HETATM 18 N N6A NAD . . . WA 5 173.824 125.927 139.772 1 217.59 ? N6A NAD 605 G 1 HETATM 19 N N1A NAD . . . WA 5 175.523 126.282 141.072 1 217.59 ? N1A NAD 605 G 1 HETATM 20 C C2A NAD . . . WA 5 176.517 126.929 141.717 1 217.59 ? C2A NAD 605 G 1 HETATM 21 N N3A NAD . . . WA 5 176.68 128.252 141.534 1 217.59 ? N3A NAD 605 G 1 HETATM 22 C C4A NAD . . . WA 5 175.864 128.929 140.713 1 217.59 ? C4A NAD 605 G 1 HETATM 23 O O3 NAD . . . WA 5 172.316 133.384 143.856 1 217.59 ? O3 NAD 605 G 1 HETATM 24 P PN NAD . . . WA 5 173.243 134.674 144.268 1 217.59 ? PN NAD 605 G 1 HETATM 25 O O1N NAD . . . WA 5 173.699 135.42 143.043 1 217.59 ? O1N NAD 605 G 1 HETATM 26 O O2N NAD . . . WA 5 174.43 134.201 145.064 1 217.59 ? O2N NAD 605 G 1 HETATM 27 O O5D NAD . . . WA 5 172.265 135.619 145.176 1 217.59 ? O5D NAD 605 G 1 HETATM 28 C C5D NAD . . . WA 5 171.111 134.965 145.597 1 217.59 ? C5D NAD 605 G 1 HETATM 29 C C4D NAD . . . WA 5 169.91 135.696 145.051 1 217.59 ? C4D NAD 605 G 1 HETATM 30 O O4D NAD . . . WA 5 170.244 137.24 144.757 1 217.59 ? O4D NAD 605 G 1 HETATM 31 C C3D NAD . . . WA 5 169.575 135.3 143.866 1 217.59 ? C3D NAD 605 G 1 HETATM 32 O O3D NAD . . . WA 5 168.909 133.969 143.9 1 217.59 ? O3D NAD 605 G 1 HETATM 33 C C2D NAD . . . WA 5 168.583 136.407 143.493 1 217.59 ? C2D NAD 605 G 1 HETATM 34 O O2D NAD . . . WA 5 167.35 136.057 143.915 1 217.59 ? O2D NAD 605 G 1 HETATM 35 C C1D NAD . . . WA 5 169.088 137.619 144.3 1 217.59 ? C1D NAD 605 G 1 HETATM 36 N N1N NAD . . . WA 5 169.134 138.826 143.463 1 217.59 ? N1N NAD 605 G 1 HETATM 37 C C2N NAD . . . WA 5 167.997 139.195 142.863 1 217.59 ? C2N NAD 605 G 1 HETATM 38 C C3N NAD . . . WA 5 167.973 140.31 142.071 1 217.59 ? C3N NAD 605 G 1 HETATM 39 C C7N NAD . . . WA 5 166.652 140.671 141.442 1 217.59 ? C7N NAD 605 G 1 HETATM 40 O O7N NAD . . . WA 5 165.671 140.271 141.955 1 217.59 ? O7N NAD 605 G 1 HETATM 41 N N7N NAD . . . WA 5 166.602 141.48 140.244 1 217.59 ? N7N NAD 605 G 1 HETATM 42 C C4N NAD . . . WA 5 169.081 141.051 141.881 1 217.59 ? C4N NAD 605 G 1 HETATM 43 C C5N NAD . . . WA 5 170.231 140.684 142.496 1 217.59 ? C5N NAD 605 G 1 HETATM 44 C C6N NAD . . . WA 5 170.254 139.56 143.309 1 217.59 ? C6N NAD 605 G 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 44 #