data_6UA4 # _model_server_result.job_id ygH7VU49Azi5VD1XZ5kmHA _model_server_result.datetime_utc '2024-10-20 20:44:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ua4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"W","auth_seq_id":602}' # _entry.id 6UA4 # _exptl.entry_id 6UA4 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 12 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UA4 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UA4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 Q N N ? 2 R N N ? 2 V N N ? 2 W N N ? 2 EA N N ? 2 FA N N ? 2 JA N N ? 2 KA N N ? 2 OA N N ? 2 PA N N ? 2 XA N N ? 2 YA N N # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 178 n n PG O2G GTP sing 179 n n PG O3G GTP sing 180 n n PG O3B GTP sing 181 n n O2G HOG2 GTP sing 182 n n O3G HOG3 GTP sing 183 n n O3B PB GTP sing 184 n n PB O1B GTP doub 185 n n PB O2B GTP sing 186 n n PB O3A GTP sing 187 n n O2B HOB2 GTP sing 188 n n O3A PA GTP sing 189 n n PA O1A GTP doub 190 n n PA O2A GTP sing 191 n n PA O5' GTP sing 192 n n O2A HOA2 GTP sing 193 n n O5' C5' GTP sing 194 n n C5' C4' GTP sing 195 n n C5' H5' GTP sing 196 n n C5' "H5''" GTP sing 197 n n C4' O4' GTP sing 198 n n C4' C3' GTP sing 199 n n C4' H4' GTP sing 200 n n O4' C1' GTP sing 201 n n C3' O3' GTP sing 202 n n C3' C2' GTP sing 203 n n C3' H3' GTP sing 204 n n O3' HO3' GTP sing 205 n n C2' O2' GTP sing 206 n n C2' C1' GTP sing 207 n n C2' H2' GTP sing 208 n n O2' HO2' GTP sing 209 n n C1' N9 GTP sing 210 n n C1' H1' GTP sing 211 n n N9 C8 GTP sing 212 n y N9 C4 GTP sing 213 n y C8 N7 GTP doub 214 n y C8 H8 GTP sing 215 n n N7 C5 GTP sing 216 n y C5 C6 GTP sing 217 n n C5 C4 GTP doub 218 n y C6 O6 GTP doub 219 n n C6 N1 GTP sing 220 n n N1 C2 GTP sing 221 n n N1 HN1 GTP sing 222 n n C2 N2 GTP sing 223 n n C2 N3 GTP doub 224 n n N2 HN21 GTP sing 225 n n N2 HN22 GTP sing 226 n n N3 C4 GTP sing 227 n n # _atom_sites.entry_id 6UA4 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 2 GTP A 1 601 517 GTP GTP . R 2 GTP A 1 602 518 GTP GTP . S 3 ATP A 1 603 519 ATP ATP . T 4 IMP A 1 604 603 IMP IMP . U 5 NAD A 1 605 701 NAD NAD . V 2 GTP B 1 601 517 GTP GTP . W 2 GTP B 1 602 518 GTP GTP . X 3 ATP B 1 603 519 ATP ATP . Y 4 IMP B 1 604 603 IMP IMP . Z 5 NAD B 1 605 701 NAD NAD . AA 3 ATP C 1 601 517 ATP ATP . BA 3 ATP C 1 602 518 ATP ATP . CA 4 IMP C 1 603 603 IMP IMP . DA 5 NAD C 1 604 701 NAD NAD . EA 2 GTP D 1 601 517 GTP GTP . FA 2 GTP D 1 602 518 GTP GTP . GA 3 ATP D 1 603 519 ATP ATP . HA 4 IMP D 1 604 603 IMP IMP . IA 5 NAD D 1 605 701 NAD NAD . JA 2 GTP E 1 601 517 GTP GTP . KA 2 GTP E 1 602 518 GTP GTP . LA 3 ATP E 1 603 519 ATP ATP . MA 4 IMP E 1 604 603 IMP IMP . NA 5 NAD E 1 605 701 NAD NAD . OA 2 GTP F 1 601 517 GTP GTP . PA 2 GTP F 1 602 518 GTP GTP . QA 3 ATP F 1 603 519 ATP ATP . RA 4 IMP F 1 604 603 IMP IMP . SA 5 NAD F 1 605 701 NAD NAD . TA 3 ATP G 1 601 517 ATP ATP . UA 3 ATP G 1 602 518 ATP ATP . VA 4 IMP G 1 603 603 IMP IMP . WA 5 NAD G 1 604 701 NAD NAD . XA 2 GTP H 1 601 517 GTP GTP . YA 2 GTP H 1 602 518 GTP GTP . ZA 3 ATP H 1 603 519 ATP ATP . AB 4 IMP H 1 604 603 IMP IMP . BB 5 NAD H 1 605 701 NAD NAD . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . W 2 205.045 204.731 189.694 1 160.48 ? PG GTP 602 B 1 HETATM 2 O O1G GTP . . . W 2 205.049 205.9 188.738 1 160.48 ? O1G GTP 602 B 1 HETATM 3 O O2G GTP . . . W 2 204.663 203.472 188.952 1 160.48 ? O2G GTP 602 B 1 HETATM 4 O O3G GTP . . . W 2 204.035 204.991 190.785 1 160.48 ? O3G GTP 602 B 1 HETATM 5 O O3B GTP . . . W 2 206.545 204.54 190.364 1 160.48 ? O3B GTP 602 B 1 HETATM 6 P PB GTP . . . W 2 207.046 205.273 191.763 1 160.48 ? PB GTP 602 B 1 HETATM 7 O O1B GTP . . . W 2 206.972 206.775 191.606 1 160.48 ? O1B GTP 602 B 1 HETATM 8 O O2B GTP . . . W 2 206.152 204.846 192.904 1 160.48 ? O2B GTP 602 B 1 HETATM 9 O O3A GTP . . . W 2 208.606 204.833 192.101 1 160.48 ? O3A GTP 602 B 1 HETATM 10 P PA GTP . . . W 2 209.828 205.916 192.364 1 160.48 ? PA GTP 602 B 1 HETATM 11 O O1A GTP . . . W 2 209.476 206.808 193.53 1 160.48 ? O1A GTP 602 B 1 HETATM 12 O O2A GTP . . . W 2 211.11 205.172 192.659 1 160.48 ? O2A GTP 602 B 1 HETATM 13 O O5' GTP . . . W 2 210.033 206.86 191.019 1 160.48 ? O5' GTP 602 B 1 HETATM 14 C C5' GTP . . . W 2 210.495 206.235 189.845 1 160.48 ? C5' GTP 602 B 1 HETATM 15 C C4' GTP . . . W 2 209.835 206.85 188.651 1 160.48 ? C4' GTP 602 B 1 HETATM 16 O O4' GTP . . . W 2 210.21 206.21 187.593 1 160.48 ? O4' GTP 602 B 1 HETATM 17 C C3' GTP . . . W 2 208.194 206.62 188.697 1 160.48 ? C3' GTP 602 B 1 HETATM 18 O O3' GTP . . . W 2 207.569 207.682 189.519 1 160.48 ? O3' GTP 602 B 1 HETATM 19 C C2' GTP . . . W 2 207.81 206.689 187.519 1 160.48 ? C2' GTP 602 B 1 HETATM 20 O O2' GTP . . . W 2 207.336 208.089 187.234 1 160.48 ? O2' GTP 602 B 1 HETATM 21 C C1' GTP . . . W 2 209.096 206.378 186.605 1 160.48 ? C1' GTP 602 B 1 HETATM 22 N N9 GTP . . . W 2 209.013 205.264 185.886 1 160.48 ? N9 GTP 602 B 1 HETATM 23 C C8 GTP . . . W 2 208.057 204.369 186.184 1 160.48 ? C8 GTP 602 B 1 HETATM 24 N N7 GTP . . . W 2 208.164 203.334 185.334 1 160.48 ? N7 GTP 602 B 1 HETATM 25 C C5 GTP . . . W 2 209.19 203.58 184.536 1 160.48 ? C5 GTP 602 B 1 HETATM 26 C C6 GTP . . . W 2 209.795 202.762 183.398 1 160.48 ? C6 GTP 602 B 1 HETATM 27 O O6 GTP . . . W 2 209.315 201.717 183.118 1 160.48 ? O6 GTP 602 B 1 HETATM 28 N N1 GTP . . . W 2 210.93 203.252 182.687 1 160.48 ? N1 GTP 602 B 1 HETATM 29 C C2 GTP . . . W 2 211.49 204.524 183.049 1 160.48 ? C2 GTP 602 B 1 HETATM 30 N N2 GTP . . . W 2 212.646 205.039 182.325 1 160.48 ? N2 GTP 602 B 1 HETATM 31 N N3 GTP . . . W 2 210.903 205.3 184.137 1 160.48 ? N3 GTP 602 B 1 HETATM 32 C C4 GTP . . . W 2 209.728 204.775 184.882 1 160.48 ? C4 GTP 602 B 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 53 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 32 #