data_6UA4
#
_model_server_result.job_id            GLj5B6AO357JhZjeyM4soA 
_model_server_result.datetime_utc      '2024-10-20 20:40:02' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ua4 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Z","auth_seq_id":605}' 
#
_entry.id    6UA4 
#
_exptl.entry_id    6UA4 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              663.425 
_entity.id                          5 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6UA4 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UA4 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 5 U N N 
? 5 Z N N 
? 5 DA N N 
? 5 IA N N 
? 5 NA N N 
? 5 SA N N 
? 5 WA N N 
? 5 BB N N 
#
_chem_comp.formula           'C21 H27 N7 O14 P2' 
_chem_comp.formula_weight    663.425 
_chem_comp.id                NAD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              NICOTINAMIDE-ADENINE-DINUCLEOTIDE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PA O1A NAD doub 372 n n 
PA O2A NAD sing 373 n n 
PA O5B NAD sing 374 n n 
PA O3 NAD sing 375 n n 
O2A HOA2 NAD sing 376 n n 
O5B C5B NAD sing 377 n n 
C5B C4B NAD sing 378 n n 
C5B H51A NAD sing 379 n n 
C5B H52A NAD sing 380 n n 
C4B O4B NAD sing 381 n n 
C4B C3B NAD sing 382 n n 
C4B H4B NAD sing 383 n n 
O4B C1B NAD sing 384 n n 
C3B O3B NAD sing 385 n n 
C3B C2B NAD sing 386 n n 
C3B H3B NAD sing 387 n n 
O3B HO3A NAD sing 388 n n 
C2B O2B NAD sing 389 n n 
C2B C1B NAD sing 390 n n 
C2B H2B NAD sing 391 n n 
O2B HO2A NAD sing 392 n n 
C1B N9A NAD sing 393 n n 
C1B H1B NAD sing 394 n n 
N9A C8A NAD sing 395 n y 
N9A C4A NAD sing 396 n y 
C8A N7A NAD doub 397 n y 
C8A H8A NAD sing 398 n n 
N7A C5A NAD sing 399 n y 
C5A C6A NAD sing 400 n y 
C5A C4A NAD doub 401 n y 
C6A N6A NAD sing 402 n n 
C6A N1A NAD doub 403 n y 
N6A H61A NAD sing 404 n n 
N6A H62A NAD sing 405 n n 
N1A C2A NAD sing 406 n y 
C2A N3A NAD doub 407 n y 
C2A H2A NAD sing 408 n n 
N3A C4A NAD sing 409 n y 
O3 PN NAD sing 410 n n 
PN O1N NAD doub 411 n n 
PN O2N NAD sing 412 n n 
PN O5D NAD sing 413 n n 
O5D C5D NAD sing 414 n n 
C5D C4D NAD sing 415 n n 
C5D H51N NAD sing 416 n n 
C5D H52N NAD sing 417 n n 
C4D O4D NAD sing 418 n n 
C4D C3D NAD sing 419 n n 
C4D H4D NAD sing 420 n n 
O4D C1D NAD sing 421 n n 
C3D O3D NAD sing 422 n n 
C3D C2D NAD sing 423 n n 
C3D H3D NAD sing 424 n n 
O3D HO3N NAD sing 425 n n 
C2D O2D NAD sing 426 n n 
C2D C1D NAD sing 427 n n 
C2D H2D NAD sing 428 n n 
O2D HO2N NAD sing 429 n n 
C1D N1N NAD sing 430 n n 
C1D H1D NAD sing 431 n n 
N1N C2N NAD sing 432 n y 
N1N C6N NAD doub 433 n y 
C2N C3N NAD doub 434 n y 
C2N H2N NAD sing 435 n n 
C3N C7N NAD sing 436 n n 
C3N C4N NAD sing 437 n y 
C7N O7N NAD doub 438 n n 
C7N N7N NAD sing 439 n n 
N7N H71N NAD sing 440 n n 
N7N H72N NAD sing 441 n n 
C4N C5N NAD doub 442 n y 
C4N H4N NAD sing 443 n n 
C5N C6N NAD sing 444 n y 
C5N H5N NAD sing 445 n n 
C6N H6N NAD sing 446 n n 
#
_atom_sites.entry_id                     6UA4 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 2 GTP A 1 601 517 GTP GTP . 
R 2 GTP A 1 602 518 GTP GTP . 
S 3 ATP A 1 603 519 ATP ATP . 
T 4 IMP A 1 604 603 IMP IMP . 
U 5 NAD A 1 605 701 NAD NAD . 
V 2 GTP B 1 601 517 GTP GTP . 
W 2 GTP B 1 602 518 GTP GTP . 
X 3 ATP B 1 603 519 ATP ATP . 
Y 4 IMP B 1 604 603 IMP IMP . 
Z 5 NAD B 1 605 701 NAD NAD . 
AA 3 ATP C 1 601 517 ATP ATP . 
BA 3 ATP C 1 602 518 ATP ATP . 
CA 4 IMP C 1 603 603 IMP IMP . 
DA 5 NAD C 1 604 701 NAD NAD . 
EA 2 GTP D 1 601 517 GTP GTP . 
FA 2 GTP D 1 602 518 GTP GTP . 
GA 3 ATP D 1 603 519 ATP ATP . 
HA 4 IMP D 1 604 603 IMP IMP . 
IA 5 NAD D 1 605 701 NAD NAD . 
JA 2 GTP E 1 601 517 GTP GTP . 
KA 2 GTP E 1 602 518 GTP GTP . 
LA 3 ATP E 1 603 519 ATP ATP . 
MA 4 IMP E 1 604 603 IMP IMP . 
NA 5 NAD E 1 605 701 NAD NAD . 
OA 2 GTP F 1 601 517 GTP GTP . 
PA 2 GTP F 1 602 518 GTP GTP . 
QA 3 ATP F 1 603 519 ATP ATP . 
RA 4 IMP F 1 604 603 IMP IMP . 
SA 5 NAD F 1 605 701 NAD NAD . 
TA 3 ATP G 1 601 517 ATP ATP . 
UA 3 ATP G 1 602 518 ATP ATP . 
VA 4 IMP G 1 603 603 IMP IMP . 
WA 5 NAD G 1 604 701 NAD NAD . 
XA 2 GTP H 1 601 517 GTP GTP . 
YA 2 GTP H 1 602 518 GTP GTP . 
ZA 3 ATP H 1 603 519 ATP ATP . 
AB 4 IMP H 1 604 603 IMP IMP . 
BB 5 NAD H 1 605 701 NAD NAD . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PA NAD . . . Z 5 203.343 165.87 188.386 1 113.21 ? PA NAD 605 B 1 
HETATM 2 O O1A NAD . . . Z 5 204 166.814 189.357 1 113.21 ? O1A NAD 605 B 1 
HETATM 3 O O2A NAD . . . Z 5 204.089 165.857 187.077 1 113.21 ? O2A NAD 605 B 1 
HETATM 4 O O5B NAD . . . Z 5 203.281 164.355 189.019 1 113.21 ? O5B NAD 605 B 1 
HETATM 5 C C5B NAD . . . Z 5 204.298 163.449 188.706 1 113.21 ? C5B NAD 605 B 1 
HETATM 6 C C4B NAD . . . Z 5 203.982 162.055 189.224 1 113.21 ? C4B NAD 605 B 1 
HETATM 7 O O4B NAD . . . Z 5 205.34 161.365 189.757 1 113.21 ? O4B NAD 605 B 1 
HETATM 8 C C3B NAD . . . Z 5 203.188 162.093 190.25 1 113.21 ? C3B NAD 605 B 1 
HETATM 9 O O3B NAD . . . Z 5 202.49 160.783 190.4 1 113.21 ? O3B NAD 605 B 1 
HETATM 10 C C2B NAD . . . Z 5 204.129 162.312 191.442 1 113.21 ? C2B NAD 605 B 1 
HETATM 11 O O2B NAD . . . Z 5 203.605 161.738 192.55 1 113.21 ? O2B NAD 605 B 1 
HETATM 12 C C1B NAD . . . Z 5 205.433 161.611 191.035 1 113.21 ? C1B NAD 605 B 1 
HETATM 13 N N9A NAD . . . Z 5 206.562 162.517 191.284 1 113.21 ? N9A NAD 605 B 1 
HETATM 14 C C8A NAD . . . Z 5 206.78 163.805 191.513 1 113.21 ? C8A NAD 605 B 1 
HETATM 15 N N7A NAD . . . Z 5 208.098 163.946 191.661 1 113.21 ? N7A NAD 605 B 1 
HETATM 16 C C5A NAD . . . Z 5 208.668 162.745 191.52 1 113.21 ? C5A NAD 605 B 1 
HETATM 17 C C6A NAD . . . Z 5 209.974 162.334 191.571 1 113.21 ? C6A NAD 605 B 1 
HETATM 18 N N6A NAD . . . Z 5 211.265 162.942 191.794 1 113.21 ? N6A NAD 605 B 1 
HETATM 19 N N1A NAD . . . Z 5 210.277 161.062 191.401 1 113.21 ? N1A NAD 605 B 1 
HETATM 20 C C2A NAD . . . Z 5 209.301 160.157 191.164 1 113.21 ? C2A NAD 605 B 1 
HETATM 21 N N3A NAD . . . Z 5 208.014 160.561 191.107 1 113.21 ? N3A NAD 605 B 1 
HETATM 22 C C4A NAD . . . Z 5 207.712 161.852 191.287 1 113.21 ? C4A NAD 605 B 1 
HETATM 23 O O3 NAD . . . Z 5 201.792 166.311 188.113 1 113.21 ? O3 NAD 605 B 1 
HETATM 24 P PN NAD . . . Z 5 200.826 165.353 187.199 1 113.21 ? PN NAD 605 B 1 
HETATM 25 O O1N NAD . . . Z 5 199.685 164.837 188.034 1 113.21 ? O1N NAD 605 B 1 
HETATM 26 O O2N NAD . . . Z 5 201.635 164.203 186.656 1 113.21 ? O2N NAD 605 B 1 
HETATM 27 O O5D NAD . . . Z 5 200.264 166.254 185.948 1 113.21 ? O5D NAD 605 B 1 
HETATM 28 C C5D NAD . . . Z 5 201.096 167.291 185.527 1 113.21 ? C5D NAD 605 B 1 
HETATM 29 C C4D NAD . . . Z 5 200.227 168.494 185.243 1 113.21 ? C4D NAD 605 B 1 
HETATM 30 O O4D NAD . . . Z 5 198.687 168.092 185.487 1 113.21 ? O4D NAD 605 B 1 
HETATM 31 C C3D NAD . . . Z 5 200.518 169.463 186.064 1 113.21 ? C3D NAD 605 B 1 
HETATM 32 O O3D NAD . . . Z 5 200.896 170.664 185.267 1 113.21 ? O3D NAD 605 B 1 
HETATM 33 C C2D NAD . . . Z 5 199.235 169.77 186.849 1 113.21 ? C2D NAD 605 B 1 
HETATM 34 O O2D NAD . . . Z 5 199.076 171.113 186.9 1 113.21 ? O2D NAD 605 B 1 
HETATM 35 C C1D NAD . . . Z 5 198.124 169.142 186 1 113.21 ? C1D NAD 605 B 1 
HETATM 36 N N1N NAD . . . Z 5 197 168.696 186.836 1 113.21 ? N1N NAD 605 B 1 
HETATM 37 C C2N NAD . . . Z 5 196.396 169.539 187.695 1 113.21 ? C2N NAD 605 B 1 
HETATM 38 C C3N NAD . . . Z 5 195.339 169.068 188.454 1 113.21 ? C3N NAD 605 B 1 
HETATM 39 C C7N NAD . . . Z 5 194.629 169.982 189.427 1 113.21 ? C7N NAD 605 B 1 
HETATM 40 O O7N NAD . . . Z 5 195.253 170.651 190.168 1 113.21 ? O7N NAD 605 B 1 
HETATM 41 N N7N NAD . . . Z 5 193.179 170.019 189.418 1 113.21 ? N7N NAD 605 B 1 
HETATM 42 C C4N NAD . . . Z 5 194.92 167.791 188.354 1 113.21 ? C4N NAD 605 B 1 
HETATM 43 C C5N NAD . . . Z 5 195.523 166.954 187.484 1 113.21 ? C5N NAD 605 B 1 
HETATM 44 C C6N NAD . . . Z 5 196.582 167.419 186.724 1 113.21 ? C6N NAD 605 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    37 
_model_server_stats.query_time_ms           260 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#