data_6UAG # _model_server_result.job_id kL_nUwM0uGvl0Bm_e2Yq2w _model_server_result.datetime_utc '2024-11-14 17:32:18' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uag # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":202}' # _entry.id 6UAG # _exptl.entry_id 6UAG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 9 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 111.17 _cell.angle_gamma 90 _cell.entry_id 6UAG _cell.length_a 74.968 _cell.length_b 89.391 _cell.length_c 74.927 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UAG _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,M,N,O,W,X 1 1 C,D,I,J,P,Q,R,Y,Z 2 1 E,F,K,L,S,T,U,V,AA,BA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 M N N ? 3 N N N ? 3 O N N ? 3 P N N ? 3 Q N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 1 _pdbx_entity_branch_link.entity_branch_list_num_2 2 _pdbx_entity_branch_link.comp_id_1 GLC _pdbx_entity_branch_link.comp_id_2 FRU _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O2 _pdbx_entity_branch_link.leaving_atom_id_2 HO2 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n G GLC 1 G 1 GLC A 201 SUC 2 n G FRU 2 G 2 FRU A 201 SUC 2 n H GLC 1 H 1 GLC B 201 SUC 2 n H FRU 2 H 2 FRU B 201 SUC 2 n I GLC 1 I 1 GLC C 201 SUC 2 n I FRU 2 I 2 FRU C 201 SUC 2 n J GLC 1 J 1 GLC D 201 SUC 2 n J FRU 2 J 2 FRU D 201 SUC 2 n K GLC 1 K 1 GLC E 201 SUC 2 n K FRU 2 K 2 FRU E 201 SUC 2 n L GLC 1 L 1 GLC F 201 SUC 2 n L FRU 2 L 2 FRU F 201 SUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 12 A PRO 12 1_555 A N MSE 13 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale2 A C MSE 13 A MSE 13 1_555 A N ASP 14 A ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale3 A C ALA 82 A ALA 82 1_555 A N MSE 83 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale4 A C MSE 83 A MSE 83 1_555 A N ASN 84 A ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale5 A C LYS 87 A LYS 87 1_555 A N MSE 88 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale6 A C MSE 88 A MSE 88 1_555 A N VAL 89 A VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale7 B C PRO 12 B PRO 12 1_555 B N MSE 13 B MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.319 ? covale ? covale8 B C MSE 13 B MSE 13 1_555 B N ASP 14 B ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 B C ALA 82 B ALA 82 1_555 B N MSE 83 B MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 B C MSE 83 B MSE 83 1_555 B N ASN 84 B ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale11 B C LYS 87 B LYS 87 1_555 B N MSE 88 B MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale12 B C MSE 88 B MSE 88 1_555 B N VAL 89 B VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 C C PRO 12 C PRO 12 1_555 C N MSE 13 C MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale14 C C MSE 13 C MSE 13 1_555 C N ASP 14 C ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale15 C C ALA 82 C ALA 82 1_555 C N MSE 83 C MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale16 C C MSE 83 C MSE 83 1_555 C N ASN 84 C ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale17 C C LYS 87 C LYS 87 1_555 C N MSE 88 C MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale18 C C MSE 88 C MSE 88 1_555 C N VAL 89 C VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale19 D C PRO 12 D PRO 12 1_555 D N MSE 13 D MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale20 D C MSE 13 D MSE 13 1_555 D N ASP 14 D ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale21 D C ALA 82 D ALA 82 1_555 D N MSE 83 D MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale22 D C MSE 83 D MSE 83 1_555 D N ASN 84 D ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale23 D C LYS 87 D LYS 87 1_555 D N MSE 88 D MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale24 D C MSE 88 D MSE 88 1_555 D N VAL 89 D VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale25 E C PRO 12 E PRO 12 1_555 E N MSE 13 E MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale26 E C MSE 13 E MSE 13 1_555 E N ASP 14 E ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.321 ? covale ? covale27 E C ALA 82 E ALA 82 1_555 E N MSE 83 E MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale28 E C MSE 83 E MSE 83 1_555 E N ASN 84 E ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.341 ? covale ? covale29 E C LYS 87 E LYS 87 1_555 E N MSE 88 E MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.345 ? covale ? covale30 E C MSE 88 E MSE 88 1_555 E N VAL 89 E VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale31 F C PRO 12 F PRO 12 1_555 F N MSE 13 F MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale32 F C MSE 13 F MSE 13 1_555 F N ASP 14 F ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale33 F C ALA 82 F ALA 82 1_555 F N MSE 83 F MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale34 F C MSE 83 F MSE 83 1_555 F N ASN 84 F ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale35 F C LYS 87 F LYS 87 1_555 F N MSE 88 F MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale36 F C MSE 88 F MSE 88 1_555 F N VAL 89 F VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale37 G C1 GLC . G GLC 1 1_555 G O2 FRU . G FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.414 sing covale ? covale38 H C1 GLC . H GLC 1 1_555 H O2 FRU . H FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.417 sing covale ? covale39 I C1 GLC . I GLC 1 1_555 I O2 FRU . I FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.425 sing covale ? covale40 J C1 GLC . J GLC 1 1_555 J O2 FRU . J FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.41 sing covale ? covale41 K C1 GLC . K GLC 1 1_555 K O2 FRU . K FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.413 sing covale ? covale42 L C1 GLC . L GLC 1 1_555 L O2 FRU . L FRU 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.418 sing # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 177 n n C1 C2 GOL sing 178 n n C1 H11 GOL sing 179 n n C1 H12 GOL sing 180 n n O1 HO1 GOL sing 181 n n C2 O2 GOL sing 182 n n C2 C3 GOL sing 183 n n C2 H2 GOL sing 184 n n O2 HO2 GOL sing 185 n n C3 O3 GOL sing 186 n n C3 H31 GOL sing 187 n n C3 H32 GOL sing 188 n n O3 HO3 GOL sing 189 n n # _atom_sites.entry_id 6UAG _atom_sites.fract_transf_matrix[1][1] 0.013339 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005166 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011187 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014312 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 3 GOL A 1 202 1 GOL GOL . N 3 GOL A 1 203 9 GOL GOL . O 3 GOL B 1 202 3 GOL GOL . P 3 GOL C 1 202 5 GOL GOL . Q 3 GOL D 1 202 4 GOL GOL . R 4 SO4 D 1 203 5 SO4 SO4 . S 3 GOL E 1 202 2 GOL GOL . T 3 GOL E 1 203 6 GOL GOL . U 3 GOL E 1 204 8 GOL GOL . V 3 GOL F 1 202 7 GOL GOL . W 5 HOH A 1 301 26 HOH HOH . W 5 HOH A 2 302 36 HOH HOH . W 5 HOH A 3 303 29 HOH HOH . W 5 HOH A 4 304 7 HOH HOH . X 5 HOH B 1 301 24 HOH HOH . Y 5 HOH C 1 301 3 HOH HOH . Y 5 HOH C 2 302 21 HOH HOH . Y 5 HOH C 3 303 20 HOH HOH . Z 5 HOH D 1 301 35 HOH HOH . Z 5 HOH D 2 302 27 HOH HOH . Z 5 HOH D 3 303 8 HOH HOH . AA 5 HOH E 1 301 34 HOH HOH . AA 5 HOH E 2 302 5 HOH HOH . AA 5 HOH E 3 303 31 HOH HOH . AA 5 HOH E 4 304 6 HOH HOH . AA 5 HOH E 5 305 12 HOH HOH . AA 5 HOH E 6 306 37 HOH HOH . BA 5 HOH F 1 301 4 HOH HOH . BA 5 HOH F 2 302 33 HOH HOH . BA 5 HOH F 3 303 32 HOH HOH . BA 5 HOH F 4 304 38 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . V 3 19.728 -11.516 61.485 1 46.28 ? C1 GOL 202 F 1 HETATM 2 O O1 GOL . . . V 3 19.058 -10.355 61.043 1 44.68 ? O1 GOL 202 F 1 HETATM 3 C C2 GOL . . . V 3 20.919 -11.835 60.464 1 50.69 ? C2 GOL 202 F 1 HETATM 4 O O2 GOL . . . V 3 22.043 -11.02 60.618 1 53.14 ? O2 GOL 202 F 1 HETATM 5 C C3 GOL . . . V 3 20.329 -11.771 59.021 1 43.3 ? C3 GOL 202 F 1 HETATM 6 O O3 GOL . . . V 3 21.38 -12.026 58.108 1 33.96 ? O3 GOL 202 F 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 233 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #