data_6UAH # _model_server_result.job_id iSG0TulHYBZjyazZRuY7GA _model_server_result.datetime_utc '2024-11-24 14:59:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uah # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6UAH # _exptl.entry_id 6UAH _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 401.478 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoy l)pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6UAH _cell.length_a 104.41 _cell.length_b 104.41 _cell.length_c 98.849 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UAH _symmetry.cell_setting ? _symmetry.Int_Tables_number 181 _symmetry.space_group_name_Hall 'P 64 2 (x,y,z+1/6)' _symmetry.space_group_name_H-M 'P 64 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -104.41 0 0 3 'crystal symmetry operation' 8_555 x-y,-y,-z 1 0 0 0 -1 0 0 0 -1 0 0 0 4 'crystal symmetry operation' 11_455 -x+y-1,y,-z -1 0 0 0 1 0 0 0 -1 -104.41 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 224 A CYS 239 1_555 A SG CYS 252 A CYS 267 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc1 A NE2 HIS 90 A HIS 105 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc2 A ND1 HIS 92 A HIS 107 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc3 A OD2 ASP 94 A ASP 109 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.104 ? metalc ? metalc4 A NE2 HIS 95 A HIS 110 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc5 A NE2 HIS 166 A HIS 181 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc6 A NE2 HIS 231 A HIS 246 1_555 C ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? metalc ? metalc7 B ZN ZN . A ZN 301 1_555 D O71 LMP . A LMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.956 ? metalc ? metalc8 C ZN ZN . A ZN 302 1_555 D O32 LMP . A LMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.417 ? metalc ? metalc9 C ZN ZN . A ZN 302 1_555 D N4 LMP . A LMP 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? # _chem_comp.formula 'C17 H27 N3 O6 S' _chem_comp.formula_weight 401.478 _chem_comp.id LMP _chem_comp.mon_nstd_flag . _chem_comp.name '(2~{S},3~{R},4~{S})-2-[(2~{S},3~{R})-1,3-bis(oxidanyl)-1-oxidanylidene-butan-2-yl]-4-[(3~{S},5~{S})-5-(dimethylcarbamoy l)pyrrolidin-3-yl]sulfanyl-3-methyl-3,4-dihydro-2~{H}-pyrrole-5-carboxylic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'Hydrolyzed Meropenem' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O62 C61 LMP sing 203 n n C62 C61 LMP sing 204 n n C11 C1 LMP sing 205 n n C61 C6 LMP sing 206 n n O71 C7 LMP doub 207 n n C7 C6 LMP sing 208 n n C7 O72 LMP sing 209 n n C1 C2 LMP sing 210 n n C1 C5 LMP sing 211 n n C2 C3 LMP sing 212 n n C2 S21 LMP sing 213 n n C6 C5 LMP sing 214 n n C3 C31 LMP sing 215 n n C3 N4 LMP doub 216 n n O31 C31 LMP doub 217 n n C5 N4 LMP sing 218 n n C31 O32 LMP sing 219 n n S21 C1A LMP sing 220 n n C1A C2A LMP sing 221 n n C1A C4A LMP sing 222 n n C2A C5A LMP sing 223 n n C4A N3A LMP sing 224 n n O7A C6A LMP doub 225 n n N3A C5A LMP sing 226 n n C5A C6A LMP sing 227 n n C6A N7A LMP sing 228 n n C8A N7A LMP sing 229 n n N7A C9A LMP sing 230 n n C1 H1 LMP sing 231 n n C2 H2 LMP sing 232 n n C9A H3 LMP sing 233 n n C9A H4 LMP sing 234 n n C9A H5 LMP sing 235 n n C8A H6 LMP sing 236 n n C8A H7 LMP sing 237 n n C8A H8 LMP sing 238 n n C5A H9 LMP sing 239 n n C2A H10 LMP sing 240 n n C2A H11 LMP sing 241 n n N3A H12 LMP sing 242 n n C4A H14 LMP sing 243 n n C4A H15 LMP sing 244 n n C1A H16 LMP sing 245 n n O32 H17 LMP sing 246 n n C11 H18 LMP sing 247 n n C11 H19 LMP sing 248 n n C11 H20 LMP sing 249 n n C5 H21 LMP sing 250 n n C6 H22 LMP sing 251 n n C61 H23 LMP sing 252 n n O62 H24 LMP sing 253 n n C62 H25 LMP sing 254 n n C62 H26 LMP sing 255 n n C62 H27 LMP sing 256 n n O72 H28 LMP sing 257 n n # _atom_sites.entry_id 6UAH _atom_sites.fract_transf_matrix[1][1] 0.009578 _atom_sites.fract_transf_matrix[1][2] 0.00553 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011059 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010116 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 301 ZN ZN . C 2 ZN A 1 302 302 ZN ZN . D 3 LMP A 1 303 303 LMP 0RV . E 4 PGE A 1 304 304 PGE PG4 . F 5 EDO A 1 305 305 EDO EDO . G 6 HOH A 1 401 77 HOH HOH . G 6 HOH A 2 402 28 HOH HOH . G 6 HOH A 3 403 138 HOH HOH . G 6 HOH A 4 404 123 HOH HOH . G 6 HOH A 5 405 31 HOH HOH . G 6 HOH A 6 406 104 HOH HOH . G 6 HOH A 7 407 93 HOH HOH . G 6 HOH A 8 408 71 HOH HOH . G 6 HOH A 9 409 141 HOH HOH . G 6 HOH A 10 410 86 HOH HOH . G 6 HOH A 11 411 59 HOH HOH . G 6 HOH A 12 412 121 HOH HOH . G 6 HOH A 13 413 91 HOH HOH . G 6 HOH A 14 414 8 HOH HOH . G 6 HOH A 15 415 78 HOH HOH . G 6 HOH A 16 416 49 HOH HOH . G 6 HOH A 17 417 58 HOH HOH . G 6 HOH A 18 418 26 HOH HOH . G 6 HOH A 19 419 68 HOH HOH . G 6 HOH A 20 420 23 HOH HOH . G 6 HOH A 21 421 32 HOH HOH . G 6 HOH A 22 422 42 HOH HOH . G 6 HOH A 23 423 24 HOH HOH . G 6 HOH A 24 424 79 HOH HOH . G 6 HOH A 25 425 60 HOH HOH . G 6 HOH A 26 426 43 HOH HOH . G 6 HOH A 27 427 112 HOH HOH . G 6 HOH A 28 428 40 HOH HOH . G 6 HOH A 29 429 14 HOH HOH . G 6 HOH A 30 430 126 HOH HOH . G 6 HOH A 31 431 47 HOH HOH . G 6 HOH A 32 432 62 HOH HOH . G 6 HOH A 33 433 116 HOH HOH . G 6 HOH A 34 434 7 HOH HOH . G 6 HOH A 35 435 46 HOH HOH . G 6 HOH A 36 436 10 HOH HOH . G 6 HOH A 37 437 65 HOH HOH . G 6 HOH A 38 438 22 HOH HOH . G 6 HOH A 39 439 35 HOH HOH . G 6 HOH A 40 440 63 HOH HOH . G 6 HOH A 41 441 85 HOH HOH . G 6 HOH A 42 442 74 HOH HOH . G 6 HOH A 43 443 119 HOH HOH . G 6 HOH A 44 444 88 HOH HOH . G 6 HOH A 45 445 39 HOH HOH . G 6 HOH A 46 446 101 HOH HOH . G 6 HOH A 47 447 6 HOH HOH . G 6 HOH A 48 448 133 HOH HOH . G 6 HOH A 49 449 3 HOH HOH . G 6 HOH A 50 450 50 HOH HOH . G 6 HOH A 51 451 84 HOH HOH . G 6 HOH A 52 452 19 HOH HOH . G 6 HOH A 53 453 105 HOH HOH . G 6 HOH A 54 454 111 HOH HOH . G 6 HOH A 55 455 87 HOH HOH . G 6 HOH A 56 456 18 HOH HOH . G 6 HOH A 57 457 113 HOH HOH . G 6 HOH A 58 458 115 HOH HOH . G 6 HOH A 59 459 106 HOH HOH . G 6 HOH A 60 460 134 HOH HOH . G 6 HOH A 61 461 1 HOH HOH . G 6 HOH A 62 462 34 HOH HOH . G 6 HOH A 63 463 80 HOH HOH . G 6 HOH A 64 464 114 HOH HOH . G 6 HOH A 65 465 128 HOH HOH . G 6 HOH A 66 466 37 HOH HOH . G 6 HOH A 67 467 54 HOH HOH . G 6 HOH A 68 468 38 HOH HOH . G 6 HOH A 69 469 99 HOH HOH . G 6 HOH A 70 470 41 HOH HOH . G 6 HOH A 71 471 92 HOH HOH . G 6 HOH A 72 472 20 HOH HOH . G 6 HOH A 73 473 73 HOH HOH . G 6 HOH A 74 474 143 HOH HOH . G 6 HOH A 75 475 148 HOH HOH . G 6 HOH A 76 476 21 HOH HOH . G 6 HOH A 77 477 90 HOH HOH . G 6 HOH A 78 478 27 HOH HOH . G 6 HOH A 79 479 4 HOH HOH . G 6 HOH A 80 480 61 HOH HOH . G 6 HOH A 81 481 142 HOH HOH . G 6 HOH A 82 482 102 HOH HOH . G 6 HOH A 83 483 107 HOH HOH . G 6 HOH A 84 484 94 HOH HOH . G 6 HOH A 85 485 144 HOH HOH . G 6 HOH A 86 486 89 HOH HOH . G 6 HOH A 87 487 72 HOH HOH . G 6 HOH A 88 488 83 HOH HOH . G 6 HOH A 89 489 108 HOH HOH . G 6 HOH A 90 490 17 HOH HOH . G 6 HOH A 91 491 13 HOH HOH . G 6 HOH A 92 492 29 HOH HOH . G 6 HOH A 93 493 66 HOH HOH . G 6 HOH A 94 494 30 HOH HOH . G 6 HOH A 95 495 137 HOH HOH . G 6 HOH A 96 496 110 HOH HOH . G 6 HOH A 97 497 56 HOH HOH . G 6 HOH A 98 498 124 HOH HOH . G 6 HOH A 99 499 12 HOH HOH . G 6 HOH A 100 500 67 HOH HOH . G 6 HOH A 101 501 44 HOH HOH . G 6 HOH A 102 502 15 HOH HOH . G 6 HOH A 103 503 53 HOH HOH . G 6 HOH A 104 504 109 HOH HOH . G 6 HOH A 105 505 55 HOH HOH . G 6 HOH A 106 506 122 HOH HOH . G 6 HOH A 107 507 132 HOH HOH . G 6 HOH A 108 508 125 HOH HOH . G 6 HOH A 109 509 131 HOH HOH . G 6 HOH A 110 510 5 HOH HOH . G 6 HOH A 111 511 70 HOH HOH . G 6 HOH A 112 512 16 HOH HOH . G 6 HOH A 113 513 75 HOH HOH . G 6 HOH A 114 514 118 HOH HOH . G 6 HOH A 115 515 33 HOH HOH . G 6 HOH A 116 516 48 HOH HOH . G 6 HOH A 117 517 145 HOH HOH . G 6 HOH A 118 518 82 HOH HOH . G 6 HOH A 119 519 103 HOH HOH . G 6 HOH A 120 520 9 HOH HOH . G 6 HOH A 121 521 97 HOH HOH . G 6 HOH A 122 522 2 HOH HOH . G 6 HOH A 123 523 147 HOH HOH . G 6 HOH A 124 524 45 HOH HOH . G 6 HOH A 125 525 76 HOH HOH . G 6 HOH A 126 526 140 HOH HOH . G 6 HOH A 127 527 135 HOH HOH . G 6 HOH A 128 528 64 HOH HOH . G 6 HOH A 129 529 117 HOH HOH . G 6 HOH A 130 530 81 HOH HOH . G 6 HOH A 131 531 57 HOH HOH . G 6 HOH A 132 532 127 HOH HOH . G 6 HOH A 133 533 51 HOH HOH . G 6 HOH A 134 534 52 HOH HOH . G 6 HOH A 135 535 36 HOH HOH . G 6 HOH A 136 536 95 HOH HOH . G 6 HOH A 137 537 136 HOH HOH . G 6 HOH A 138 538 96 HOH HOH . G 6 HOH A 139 539 120 HOH HOH . G 6 HOH A 140 540 11 HOH HOH . G 6 HOH A 141 541 98 HOH HOH . G 6 HOH A 142 542 25 HOH HOH . G 6 HOH A 143 543 139 HOH HOH . G 6 HOH A 144 544 146 HOH HOH . G 6 HOH A 145 545 130 HOH HOH . G 6 HOH A 146 546 69 HOH HOH . G 6 HOH A 147 547 129 HOH HOH . G 6 HOH A 148 548 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMP . . . D 3 -30.09 -3.977 16.348 1 27.45 ? C1 LMP 303 A 1 HETATM 2 C C2 LMP . . . D 3 -30.876 -4.422 17.454 1 32.81 ? C2 LMP 303 A 1 HETATM 3 C C3 LMP . . . D 3 -31.677 -5.431 17.01 1 27.35 ? C3 LMP 303 A 1 HETATM 4 O O7A LMP . . . D 3 -29.639 -8.447 21.44 1 46.83 ? O7A LMP 303 A 1 HETATM 5 C C6A LMP . . . D 3 -28.475 -8.234 21.438 1 45.52 ? C6A LMP 303 A 1 HETATM 6 N N7A LMP . . . D 3 -27.71 -8.501 22.635 1 44.64 ? N7A LMP 303 A 1 HETATM 7 C C9A LMP . . . D 3 -28.396 -9.02 23.798 1 38.18 ? C9A LMP 303 A 1 HETATM 8 C C8A LMP . . . D 3 -26.28 -8.247 22.679 1 53.16 ? C8A LMP 303 A 1 HETATM 9 C C5A LMP . . . D 3 -27.813 -7.676 20.2 1 49.01 ? C5A LMP 303 A 1 HETATM 10 C C2A LMP . . . D 3 -28.06 -6.038 20.118 1 42.13 ? C2A LMP 303 A 1 HETATM 11 N N3A LMP . . . D 3 -28.291 -8.261 19.104 1 47.79 ? N3A LMP 303 A 1 HETATM 12 C C4A LMP . . . D 3 -28.972 -7.118 18.253 1 45.68 ? C4A LMP 303 A 1 HETATM 13 C C1A LMP . . . D 3 -28.543 -5.754 18.907 1 42.88 ? C1A LMP 303 A 1 HETATM 14 S S21 LMP . . . D 3 -30.042 -4.594 19.06 1 41.74 ? S21 LMP 303 A 1 HETATM 15 C C31 LMP . . . D 3 -32.841 -6.041 17.776 1 31.96 ? C31 LMP 303 A 1 HETATM 16 O O31 LMP . . . D 3 -32.928 -5.867 19.018 1 25.68 ? O31 LMP 303 A 1 HETATM 17 O O32 LMP . . . D 3 -33.71 -6.723 17.155 1 30.12 ? O32 LMP 303 A 1 HETATM 18 N N4 LMP . . . D 3 -31.559 -5.604 15.605 1 27.68 ? N4 LMP 303 A 1 HETATM 19 C C11 LMP . . . D 3 -29.373 -2.631 16.395 1 36.07 ? C11 LMP 303 A 1 HETATM 20 C C5 LMP . . . D 3 -30.707 -4.481 15.006 1 31.2 ? C5 LMP 303 A 1 HETATM 21 C C6 LMP . . . D 3 -31.506 -3.497 14.355 1 31.47 ? C6 LMP 303 A 1 HETATM 22 C C61 LMP . . . D 3 -31.509 -3.796 12.827 1 38.2 ? C61 LMP 303 A 1 HETATM 23 O O62 LMP . . . D 3 -30.201 -3.714 12.373 1 37.93 ? O62 LMP 303 A 1 HETATM 24 C C62 LMP . . . D 3 -32.378 -2.788 12.099 1 34.72 ? C62 LMP 303 A 1 HETATM 25 C C7 LMP . . . D 3 -32.989 -3.508 14.89 1 30.49 ? C7 LMP 303 A 1 HETATM 26 O O71 LMP . . . D 3 -33.801 -4.441 14.591 1 29.74 ? O71 LMP 303 A 1 HETATM 27 O O72 LMP . . . D 3 -33.357 -2.566 15.637 1 26.87 ? O72 LMP 303 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 511 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #