data_6UAK # _model_server_result.job_id gciapGL7tgnsqMlqwE-Xsg _model_server_result.datetime_utc '2024-12-03 20:20:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uak # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":500}' # _entry.id 6UAK # _exptl.entry_id 6UAK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6UAK _cell.length_a 115.729 _cell.length_b 115.729 _cell.length_c 71.26 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UAK _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 6_764 -x+2,-x+y+1,-z-1/3 -0.5 -0.866025 0 -0.866025 0.5 0 0 0 -1 173.5935 100.224254 -23.753333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 275 n n N HN1 SAH sing 276 n n N HN2 SAH sing 277 n n CA CB SAH sing 278 n n CA C SAH sing 279 n n CA HA SAH sing 280 n n CB CG SAH sing 281 n n CB HB1 SAH sing 282 n n CB HB2 SAH sing 283 n n CG SD SAH sing 284 n n CG HG1 SAH sing 285 n n CG HG2 SAH sing 286 n n SD C5' SAH sing 287 n n C O SAH doub 288 n n C OXT SAH sing 289 n n OXT HXT SAH sing 290 n n C5' C4' SAH sing 291 n n C5' "H5'1" SAH sing 292 n n C5' "H5'2" SAH sing 293 n n C4' O4' SAH sing 294 n n C4' C3' SAH sing 295 n n C4' H4' SAH sing 296 n n O4' C1' SAH sing 297 n n C3' O3' SAH sing 298 n n C3' C2' SAH sing 299 n n C3' H3' SAH sing 300 n n O3' HO3' SAH sing 301 n n C2' O2' SAH sing 302 n n C2' C1' SAH sing 303 n n C2' H2' SAH sing 304 n n O2' HO2' SAH sing 305 n n C1' N9 SAH sing 306 n n C1' H1' SAH sing 307 n n N9 C8 SAH sing 308 n y N9 C4 SAH sing 309 n y C8 N7 SAH doub 310 n y C8 H8 SAH sing 311 n n N7 C5 SAH sing 312 n y C5 C6 SAH sing 313 n y C5 C4 SAH doub 314 n y C6 N6 SAH sing 315 n n C6 N1 SAH doub 316 n y N6 HN61 SAH sing 317 n n N6 HN62 SAH sing 318 n n N1 C2 SAH sing 319 n y C2 N3 SAH doub 320 n y C2 H2 SAH sing 321 n n N3 C4 SAH sing 322 n y # _atom_sites.entry_id 6UAK _atom_sites.fract_transf_matrix[1][1] 0.008641 _atom_sites.fract_transf_matrix[1][2] 0.004989 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009978 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014033 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SAH _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 500 _pdbx_nonpoly_scheme.auth_seq_num 500 _pdbx_nonpoly_scheme.pdb_mon_id SAH _pdbx_nonpoly_scheme.auth_mon_id SAH _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . B 2 86.159 37.812 5.305 1 59.54 ? N SAH 500 A 1 HETATM 2 C CA SAH . . . B 2 84.711 37.957 5.144 1 62.58 ? CA SAH 500 A 1 HETATM 3 C CB SAH . . . B 2 84.436 39.398 5.534 1 62.52 ? CB SAH 500 A 1 HETATM 4 C CG SAH . . . B 2 82.986 39.823 5.615 1 59.65 ? CG SAH 500 A 1 HETATM 5 S SD SAH . . . B 2 83.023 41.596 5.629 1 71.78 ? SD SAH 500 A 1 HETATM 6 C C SAH . . . B 2 84.302 37.691 3.712 1 67.07 ? C SAH 500 A 1 HETATM 7 O O SAH . . . B 2 83.439 36.847 3.434 1 70.86 ? O SAH 500 A 1 HETATM 8 O OXT SAH . . . B 2 84.806 38.315 2.777 1 64.12 ? OXT SAH 500 A 1 HETATM 9 C C5' SAH . . . B 2 83.643 42.241 7.202 1 63.27 ? C5' SAH 500 A 1 HETATM 10 C C4' SAH . . . B 2 83.527 41.363 8.469 1 63.55 ? C4' SAH 500 A 1 HETATM 11 O O4' SAH . . . B 2 84.224 41.943 9.574 1 65.74 ? O4' SAH 500 A 1 HETATM 12 C C3' SAH . . . B 2 82.119 41.063 9.006 1 65.01 ? C3' SAH 500 A 1 HETATM 13 O O3' SAH . . . B 2 82.038 39.63 9.022 1 65.27 ? O3' SAH 500 A 1 HETATM 14 C C2' SAH . . . B 2 82.08 41.626 10.429 1 69.13 ? C2' SAH 500 A 1 HETATM 15 O O2' SAH . . . B 2 81.265 40.85 11.322 1 67.04 ? O2' SAH 500 A 1 HETATM 16 C C1' SAH . . . B 2 83.566 41.556 10.804 1 65.36 ? C1' SAH 500 A 1 HETATM 17 N N9 SAH . . . B 2 84.017 42.451 11.898 1 63.77 ? N9 SAH 500 A 1 HETATM 18 C C8 SAH . . . B 2 83.837 43.786 11.893 1 64.25 ? C8 SAH 500 A 1 HETATM 19 N N7 SAH . . . B 2 84.385 44.353 12.994 1 63.47 ? N7 SAH 500 A 1 HETATM 20 C C5 SAH . . . B 2 84.95 43.383 13.73 1 59.99 ? C5 SAH 500 A 1 HETATM 21 C C6 SAH . . . B 2 85.715 43.323 15.008 1 60.85 ? C6 SAH 500 A 1 HETATM 22 N N6 SAH . . . B 2 85.944 44.448 15.717 1 62.18 ? N6 SAH 500 A 1 HETATM 23 N N1 SAH . . . B 2 86.157 42.112 15.444 1 66.04 ? N1 SAH 500 A 1 HETATM 24 C C2 SAH . . . B 2 85.914 40.983 14.72 1 65.05 ? C2 SAH 500 A 1 HETATM 25 N N3 SAH . . . B 2 85.232 40.975 13.544 1 61.95 ? N3 SAH 500 A 1 HETATM 26 C C4 SAH . . . B 2 84.722 42.117 13 1 62.01 ? C4 SAH 500 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 39 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 322 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 26 #