data_6UAM # _model_server_result.job_id MbbwQwF5zz2bTTTjTsTW5g _model_server_result.datetime_utc '2024-11-20 09:28:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uam # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":201}' # _entry.id 6UAM # _exptl.entry_id 6UAM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.89 _cell.angle_gamma 90 _cell.entry_id 6UAM _cell.length_a 74.623 _cell.length_b 89.993 _cell.length_c 74.482 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UAM _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,Q,R 1 1 C,D,K,L,M,S,T 2 1 E,F,N,O,P,U,V 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 H N N ? 3 K N N ? 3 L N N ? 3 O N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 12 A PRO 12 1_555 A N MSE 13 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale2 A C MSE 13 A MSE 13 1_555 A N ASP 14 A ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale3 A C ALA 82 A ALA 82 1_555 A N MSE 83 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale4 A C MSE 83 A MSE 83 1_555 A N ASN 84 A ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale5 A C LYS 87 A LYS 87 1_555 A N MSE 88 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale6 A C MSE 88 A MSE 88 1_555 A N VAL 89 A VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale7 B C PRO 12 B PRO 12 1_555 B N MSE 13 B MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 B C MSE 13 B MSE 13 1_555 B N ASP 14 B ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale9 B C ALA 82 B ALA 82 1_555 B N MSE 83 B MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale10 B C MSE 83 B MSE 83 1_555 B N ASN 84 B ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale11 B C LYS 87 B LYS 87 1_555 B N MSE 88 B MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C MSE 88 B MSE 88 1_555 B N VAL 89 B VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale13 C C PRO 12 C PRO 12 1_555 C N MSE 13 C MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 C C MSE 13 C MSE 13 1_555 C N ASP 14 C ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale15 C C ALA 82 C ALA 82 1_555 C N MSE 83 C MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? covale ? covale16 C C MSE 83 C MSE 83 1_555 C N ASN 84 C ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale17 C C LYS 87 C LYS 87 1_555 C N MSE 88 C MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale18 C C MSE 88 C MSE 88 1_555 C N VAL 89 C VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale19 D C PRO 12 D PRO 12 1_555 D N MSE 13 D MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale20 D C MSE 13 D MSE 13 1_555 D N ASP 14 D ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale21 D C ALA 82 D ALA 82 1_555 D N MSE 83 D MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale22 D C MSE 83 D MSE 83 1_555 D N ASN 84 D ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale23 D C LYS 87 D LYS 87 1_555 D N MSE 88 D MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.348 ? covale ? covale24 D C MSE 88 D MSE 88 1_555 D N VAL 89 D VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale25 E C PRO 12 E PRO 12 1_555 E N MSE 13 E MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale26 E C MSE 13 E MSE 13 1_555 E N ASP 14 E ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale27 E C ALA 82 E ALA 82 1_555 E N MSE 83 E MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale28 E C MSE 83 E MSE 83 1_555 E N ASN 84 E ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale29 E C LYS 87 E LYS 87 1_555 E N MSE 88 E MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.354 ? covale ? covale30 E C MSE 88 E MSE 88 1_555 E N VAL 89 E VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale31 F C PRO 12 F PRO 12 1_555 F N MSE 13 F MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale32 F C MSE 13 F MSE 13 1_555 F N ASP 14 F ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale33 F C ALA 82 F ALA 82 1_555 F N MSE 83 F MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale34 F C MSE 83 F MSE 83 1_555 F N ASN 84 F ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? covale ? covale35 F C LYS 87 F LYS 87 1_555 F N MSE 88 F MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale36 F C MSE 88 F MSE 88 1_555 F N VAL 89 F VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 149 n n C1 C2 GOL sing 150 n n C1 H11 GOL sing 151 n n C1 H12 GOL sing 152 n n O1 HO1 GOL sing 153 n n C2 O2 GOL sing 154 n n C2 C3 GOL sing 155 n n C2 H2 GOL sing 156 n n O2 HO2 GOL sing 157 n n C3 O3 GOL sing 158 n n C3 H31 GOL sing 159 n n C3 H32 GOL sing 160 n n O3 HO3 GOL sing 161 n n # _atom_sites.entry_id 6UAM _atom_sites.fract_transf_matrix[1][1] 0.013401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005115 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011112 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014371 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CIT A 1 301 301 CIT CIT . H 3 GOL A 1 302 103 GOL GOL . I 2 CIT B 1 301 301 CIT CIT . J 2 CIT B 1 302 302 CIT CIT . K 3 GOL C 1 201 101 GOL GOL . L 3 GOL D 1 201 102 GOL GOL . M 2 CIT D 1 202 301 CIT CIT . N 2 CIT E 1 201 302 CIT CIT . O 3 GOL F 1 201 104 GOL GOL . P 2 CIT F 1 202 301 CIT CIT . Q 4 HOH A 1 401 18 HOH HOH . Q 4 HOH A 2 402 19 HOH HOH . Q 4 HOH A 3 403 5 HOH HOH . Q 4 HOH A 4 404 3 HOH HOH . Q 4 HOH A 5 405 10 HOH HOH . R 4 HOH B 1 401 4 HOH HOH . R 4 HOH B 2 402 21 HOH HOH . R 4 HOH B 3 403 7 HOH HOH . R 4 HOH B 4 404 17 HOH HOH . R 4 HOH B 5 405 13 HOH HOH . S 4 HOH C 1 301 15 HOH HOH . S 4 HOH C 2 302 14 HOH HOH . T 4 HOH D 1 301 22 HOH HOH . U 4 HOH E 1 301 11 HOH HOH . U 4 HOH E 2 302 12 HOH HOH . U 4 HOH E 3 303 20 HOH HOH . V 4 HOH F 1 301 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 3 3.239 -1.123 7.83 1 68.3 ? C1 GOL 201 D 1 HETATM 2 O O1 GOL . . . L 3 4.518 -0.59 7.774 1 69.61 ? O1 GOL 201 D 1 HETATM 3 C C2 GOL . . . L 3 3.362 -2.298 8.826 1 69.03 ? C2 GOL 201 D 1 HETATM 4 O O2 GOL . . . L 3 2.192 -3.029 8.957 1 69.43 ? O2 GOL 201 D 1 HETATM 5 C C3 GOL . . . L 3 4.559 -3.162 8.323 1 65.48 ? C3 GOL 201 D 1 HETATM 6 O O3 GOL . . . L 3 4.438 -4.406 8.965 1 60.26 ? O3 GOL 201 D 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #