data_6UBP # _model_server_result.job_id '_q2vFIawg0Ero7MoZ9yIug' _model_server_result.datetime_utc '2024-11-05 13:44:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ubp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 6UBP # _exptl.entry_id 6UBP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.225 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description TRYPTOPHAN _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UBP _cell.length_a 86.944 _cell.length_b 97.727 _cell.length_c 130.628 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UBP _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 298 A CYS 308 1_555 B SG CYS 298 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? metalc ? metalc1 A NE2 HIS 336 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.217 ? metalc ? metalc2 B NE2 HIS 336 B HIS 346 1_555 F FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.254 ? # _chem_comp.formula 'C11 H12 N2 O2' _chem_comp.formula_weight 204.225 _chem_comp.id TRP _chem_comp.mon_nstd_flag y _chem_comp.name TRYPTOPHAN _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA TRP sing 389 n n N H TRP sing 390 n n N H2 TRP sing 391 n n CA C TRP sing 392 n n CA CB TRP sing 393 n n CA HA TRP sing 394 n n C O TRP doub 395 n n C OXT TRP sing 396 n n CB CG TRP sing 397 n n CB HB2 TRP sing 398 n n CB HB3 TRP sing 399 n n CG CD1 TRP doub 400 n y CG CD2 TRP sing 401 n y CD1 NE1 TRP sing 402 n y CD1 HD1 TRP sing 403 n n CD2 CE2 TRP doub 404 n y CD2 CE3 TRP sing 405 n y NE1 CE2 TRP sing 406 n y NE1 HE1 TRP sing 407 n n CE2 CZ2 TRP sing 408 n y CE3 CZ3 TRP doub 409 n y CE3 HE3 TRP sing 410 n n CZ2 CH2 TRP doub 411 n y CZ2 HZ2 TRP sing 412 n n CZ3 CH2 TRP sing 413 n y CZ3 HZ3 TRP sing 414 n n CH2 HH2 TRP sing 415 n n OXT HXT TRP sing 416 n n # _atom_sites.entry_id 6UBP _atom_sites.fract_transf_matrix[1][1] 0.011502 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010233 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007655 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 1 HEM HEM . D 3 TRP A 1 502 2 TRP TRP . E 4 CMO A 1 503 1 CMO CMO . F 2 HEM B 1 501 2 HEM HEM . G 3 TRP B 1 502 3 TRP TRP . H 4 CMO B 1 503 2 CMO CMO . I 5 HOH A 1 601 58 HOH HOH . I 5 HOH A 2 602 48 HOH HOH . I 5 HOH A 3 603 59 HOH HOH . I 5 HOH A 4 604 57 HOH HOH . I 5 HOH A 5 605 10 HOH HOH . I 5 HOH A 6 606 66 HOH HOH . I 5 HOH A 7 607 3 HOH HOH . I 5 HOH A 8 608 80 HOH HOH . I 5 HOH A 9 609 53 HOH HOH . I 5 HOH A 10 610 8 HOH HOH . I 5 HOH A 11 611 34 HOH HOH . I 5 HOH A 12 612 60 HOH HOH . I 5 HOH A 13 613 12 HOH HOH . I 5 HOH A 14 614 67 HOH HOH . I 5 HOH A 15 615 52 HOH HOH . I 5 HOH A 16 616 76 HOH HOH . I 5 HOH A 17 617 13 HOH HOH . I 5 HOH A 18 618 2 HOH HOH . I 5 HOH A 19 619 45 HOH HOH . I 5 HOH A 20 620 46 HOH HOH . I 5 HOH A 21 621 64 HOH HOH . I 5 HOH A 22 622 6 HOH HOH . I 5 HOH A 23 623 1 HOH HOH . I 5 HOH A 24 624 47 HOH HOH . I 5 HOH A 25 625 63 HOH HOH . I 5 HOH A 26 626 28 HOH HOH . I 5 HOH A 27 627 24 HOH HOH . I 5 HOH A 28 628 56 HOH HOH . I 5 HOH A 29 629 44 HOH HOH . I 5 HOH A 30 630 79 HOH HOH . I 5 HOH A 31 631 11 HOH HOH . I 5 HOH A 32 632 7 HOH HOH . I 5 HOH A 33 633 5 HOH HOH . I 5 HOH A 34 634 33 HOH HOH . I 5 HOH A 35 635 50 HOH HOH . I 5 HOH A 36 636 49 HOH HOH . J 5 HOH B 1 601 20 HOH HOH . J 5 HOH B 2 602 38 HOH HOH . J 5 HOH B 3 603 39 HOH HOH . J 5 HOH B 4 604 82 HOH HOH . J 5 HOH B 5 605 40 HOH HOH . J 5 HOH B 6 606 17 HOH HOH . J 5 HOH B 7 607 86 HOH HOH . J 5 HOH B 8 608 75 HOH HOH . J 5 HOH B 9 609 83 HOH HOH . J 5 HOH B 10 610 61 HOH HOH . J 5 HOH B 11 611 19 HOH HOH . J 5 HOH B 12 612 41 HOH HOH . J 5 HOH B 13 613 25 HOH HOH . J 5 HOH B 14 614 18 HOH HOH . J 5 HOH B 15 615 30 HOH HOH . J 5 HOH B 16 616 15 HOH HOH . J 5 HOH B 17 617 31 HOH HOH . J 5 HOH B 18 618 35 HOH HOH . J 5 HOH B 19 619 62 HOH HOH . J 5 HOH B 20 620 71 HOH HOH . J 5 HOH B 21 621 84 HOH HOH . J 5 HOH B 22 622 21 HOH HOH . J 5 HOH B 23 623 37 HOH HOH . J 5 HOH B 24 624 65 HOH HOH . J 5 HOH B 25 625 70 HOH HOH . J 5 HOH B 26 626 32 HOH HOH . J 5 HOH B 27 627 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N TRP . . . D 3 112.845 -0.391 157.029 1 141.42 ? N TRP 502 A 1 HETATM 2 C CA TRP . . . D 3 113.226 -1.362 158.103 1 140.63 ? CA TRP 502 A 1 HETATM 3 C C TRP . . . D 3 114.071 -0.651 159.169 1 137.99 ? C TRP 502 A 1 HETATM 4 O O TRP . . . D 3 115.19 -1.044 159.495 1 136.49 ? O TRP 502 A 1 HETATM 5 C CB TRP . . . D 3 113.95 -2.58 157.506 1 141.85 ? CB TRP 502 A 1 HETATM 6 C CG TRP . . . D 3 113.041 -3.561 156.828 1 142.92 ? CG TRP 502 A 1 HETATM 7 C CD1 TRP . . . D 3 111.815 -3.975 157.263 1 143.68 ? CD1 TRP 502 A 1 HETATM 8 C CD2 TRP . . . D 3 113.294 -4.282 155.608 1 142.81 ? CD2 TRP 502 A 1 HETATM 9 N NE1 TRP . . . D 3 111.282 -4.888 156.394 1 143.75 ? NE1 TRP 502 A 1 HETATM 10 C CE2 TRP . . . D 3 112.166 -5.097 155.369 1 142.89 ? CE2 TRP 502 A 1 HETATM 11 C CE3 TRP . . . D 3 114.353 -4.315 154.692 1 142.29 ? CE3 TRP 502 A 1 HETATM 12 C CZ2 TRP . . . D 3 112.072 -5.932 154.256 1 141.58 ? CZ2 TRP 502 A 1 HETATM 13 C CZ3 TRP . . . D 3 114.258 -5.141 153.592 1 141.39 ? CZ3 TRP 502 A 1 HETATM 14 C CH2 TRP . . . D 3 113.132 -5.937 153.379 1 140.87 ? CH2 TRP 502 A 1 HETATM 15 O OXT TRP . . . D 3 113.638 0.352 159.737 1 135.18 ? OXT TRP 502 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 15 #