data_6UBY
#
_model_server_result.job_id            k4xvUytJxKNd3BHHBuEHnQ 
_model_server_result.datetime_utc      '2024-11-14 17:15:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uby 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"Q","auth_seq_id":802}' 
#
_entry.id    6UBY 
#
_exptl.entry_id    6UBY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    nonameric 
_pdbx_struct_assembly.oligomeric_count      9 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 K N N 
? 4 M N N 
? 4 O N N 
? 4 Q N N 
? 4 S N N 
? 4 U N N 
? 4 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 J MG MG . A MG 801 1_555 K O3B ADP . A ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc2 J MG MG . A MG 801 1_555 K O2B ADP . A ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc3 L MG MG . B MG 801 1_555 M O2B ADP . B ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc4 L MG MG . B MG 801 1_555 M O3B ADP . B ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc5 N MG MG . C MG 801 1_555 O O2B ADP . C ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc6 N MG MG . C MG 801 1_555 O O3B ADP . C ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc7 P MG MG . D MG 801 1_555 Q O2B ADP . D ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc8 P MG MG . D MG 801 1_555 Q O3B ADP . D ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc9 R MG MG . E MG 801 1_555 S O2B ADP . E ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc10 R MG MG . E MG 801 1_555 S O3B ADP . E ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc11 T MG MG . F MG 801 1_555 U O2B ADP . F ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
metalc ? metalc12 T MG MG . F MG 801 1_555 U O3B ADP . F ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc13 V MG MG . G MG 801 1_555 W O3B ADP . G ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? 
metalc ? metalc14 V MG MG . G MG 801 1_555 W O2B ADP . G ADP 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6UBY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
J 3 MG A 1 801 801 MG MG . 
K 4 ADP A 1 802 802 ADP ADP . 
L 3 MG B 1 801 801 MG MG . 
M 4 ADP B 1 802 802 ADP ADP . 
N 3 MG C 1 801 801 MG MG . 
O 4 ADP C 1 802 802 ADP ADP . 
P 3 MG D 1 801 801 MG MG . 
Q 4 ADP D 1 802 802 ADP ADP . 
R 3 MG E 1 801 801 MG MG . 
S 4 ADP E 1 802 802 ADP ADP . 
T 3 MG F 1 801 801 MG MG . 
U 4 ADP F 1 802 802 ADP ADP . 
V 3 MG G 1 801 801 MG MG . 
W 4 ADP G 1 802 802 ADP ADP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . Q 4 150.801 128.92 87.096 1 38.03 ? PB ADP 802 D 1 
HETATM 2 O O1B ADP . . . Q 4 150.314 128.196 85.864 1 38.03 ? O1B ADP 802 D 1 
HETATM 3 O O2B ADP . . . Q 4 151.626 128.072 88.035 1 38.03 ? O2B ADP 802 D 1 
HETATM 4 O O3B ADP . . . Q 4 149.752 129.765 87.776 1 38.03 ? O3B ADP 802 D 1 
HETATM 5 P PA ADP . . . Q 4 153.183 129.532 85.75 1 38.03 ? PA ADP 802 D 1 
HETATM 6 O O1A ADP . . . Q 4 152.807 128.481 84.732 1 38.03 ? O1A ADP 802 D 1 
HETATM 7 O O2A ADP . . . Q 4 154.257 129.252 86.775 1 38.03 ? O2A ADP 802 D 1 
HETATM 8 O O3A ADP . . . Q 4 151.848 129.997 86.519 1 38.03 ? O3A ADP 802 D 1 
HETATM 9 O O5' ADP . . . Q 4 153.576 130.87 84.952 1 38.03 ? O5' ADP 802 D 1 
HETATM 10 C C5' ADP . . . Q 4 154.071 130.801 83.618 1 38.03 ? C5' ADP 802 D 1 
HETATM 11 C C4' ADP . . . Q 4 154.592 132.172 83.218 1 38.03 ? C4' ADP 802 D 1 
HETATM 12 O O4' ADP . . . Q 4 155.959 132.3 83.614 1 38.03 ? O4' ADP 802 D 1 
HETATM 13 C C3' ADP . . . Q 4 154.543 132.387 81.714 1 38.03 ? C3' ADP 802 D 1 
HETATM 14 O O3' ADP . . . Q 4 153.468 133.266 81.375 1 38.03 ? O3' ADP 802 D 1 
HETATM 15 C C2' ADP . . . Q 4 155.871 133.014 81.347 1 38.03 ? C2' ADP 802 D 1 
HETATM 16 O O2' ADP . . . Q 4 155.671 134.372 80.943 1 38.03 ? O2' ADP 802 D 1 
HETATM 17 C C1' ADP . . . Q 4 156.719 132.968 82.606 1 38.03 ? C1' ADP 802 D 1 
HETATM 18 N N9 ADP . . . Q 4 157.962 132.204 82.332 1 38.03 ? N9 ADP 802 D 1 
HETATM 19 C C8 ADP . . . Q 4 158.023 130.897 82.018 1 38.03 ? C8 ADP 802 D 1 
HETATM 20 N N7 ADP . . . Q 4 159.306 130.498 81.822 1 38.03 ? N7 ADP 802 D 1 
HETATM 21 C C5 ADP . . . Q 4 160.094 131.572 82.012 1 38.03 ? C5 ADP 802 D 1 
HETATM 22 C C6 ADP . . . Q 4 161.549 131.848 81.961 1 38.03 ? C6 ADP 802 D 1 
HETATM 23 N N6 ADP . . . Q 4 162.439 130.872 81.66 1 38.03 ? N6 ADP 802 D 1 
HETATM 24 N N1 ADP . . . Q 4 161.956 133.108 82.225 1 38.03 ? N1 ADP 802 D 1 
HETATM 25 C C2 ADP . . . Q 4 161.083 134.086 82.523 1 38.03 ? C2 ADP 802 D 1 
HETATM 26 N N3 ADP . . . Q 4 159.752 133.908 82.587 1 38.03 ? N3 ADP 802 D 1 
HETATM 27 C C4 ADP . . . Q 4 159.204 132.695 82.344 1 38.03 ? C4 ADP 802 D 1 
#
_model_server_stats.io_time_ms              20 
_model_server_stats.parse_time_ms           14 
_model_server_stats.create_model_time_ms    41 
_model_server_stats.query_time_ms           348 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           27 
#