data_6UD2 # _model_server_result.job_id cGlHzTZrdr4ZAxtlUr7KNg _model_server_result.datetime_utc '2024-11-27 18:20:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ud2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6UD2 # _exptl.entry_id 6UD2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 820.385 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4S,7aR,9aR,10S,11E,18R)-6'-chloro-10-[2-(3,3-difluoroazetidin-1-yl)ethoxy]-N-(dimethylsulfamoyl)-18-hydroxy-15-methyl-16-oxo-3',4',7,7a,8,9,9a,10,13,14,15,16,17,18-tetradecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)cyclobuta[n][1,4]oxazepino[4,3-a][1,8]diazacyclohexadecine-4,1'-naphthalene]-18-carboxamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UD2 _cell.length_a 44.028 _cell.length_b 89.768 _cell.length_c 84.855 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UD2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_557 -x,y,-z+5/2 -1 0 0 0 1 0 0 0 -1 0 0 212.1375 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C40 H52 Cl F2 N5 O7 S' _chem_comp.formula_weight 820.385 _chem_comp.id Q4D _chem_comp.mon_nstd_flag . _chem_comp.name "(4S,7aR,9aR,10S,11E,18R)-6'-chloro-10-[2-(3,3-difluoroazetidin-1-yl)ethoxy]-N-(dimethylsulfamoyl)-18-hydroxy-15-methyl-16-oxo-3',4',7,7a,8,9,9a,10,13,14,15,16,17,18-tetradecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)cyclobuta[n][1,4]oxazepino[4,3-a][1,8]diazacyclohexadecine-4,1'-naphthalene]-18-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C17 Q4D sing 277 n n C17 C18 Q4D doub 278 n y C17 C16 Q4D sing 279 n y C18 C13 Q4D sing 280 n y C16 C15 Q4D doub 281 n y C13 C2 Q4D sing 282 n n C13 C14 Q4D doub 283 n y C15 C14 Q4D sing 284 n y C11 O1 Q4D sing 285 n n C11 C1 Q4D sing 286 n n C2 C3 Q4D sing 287 n n C14 C1 Q4D sing 288 n n O1 C10 Q4D sing 289 n n C1 C4 Q4D sing 290 n n C1 C12 Q4D sing 291 n n C4 C3 Q4D sing 292 n n C5 C10 Q4D doub 293 n y C5 C6 Q4D sing 294 n y C10 C9 Q4D sing 295 n y C6 C7 Q4D doub 296 n y C12 N1 Q4D sing 297 n n C9 N1 Q4D sing 298 n n C9 C8 Q4D doub 299 n y N1 C19 Q4D sing 300 n n C7 C8 Q4D sing 301 n y C7 C23 Q4D sing 302 n n O5 C33 Q4D doub 303 n n O2 C23 Q4D sing 304 n n C19 C20 Q4D sing 305 n n O7 S1 Q4D doub 306 n n C23 C33 Q4D sing 307 n n C23 C24 Q4D sing 308 n n C33 N3 Q4D sing 309 n n N3 S1 Q4D sing 310 n n C20 C31 Q4D sing 311 n n C20 C21 Q4D sing 312 n n S1 O6 Q4D doub 313 n n S1 N4 Q4D sing 314 n n C31 C30 Q4D sing 315 n n C24 C25 Q4D sing 316 n n C40 N4 Q4D sing 317 n n O3 C25 Q4D doub 318 n n N4 C39 Q4D sing 319 n n C21 C30 Q4D sing 320 n n C21 C22 Q4D sing 321 n n C25 N2 Q4D sing 322 n n C22 C29 Q4D sing 323 n n C22 O4 Q4D sing 324 n n N2 C26 Q4D sing 325 n n N2 C32 Q4D sing 326 n n C26 C27 Q4D sing 327 n n C29 C28 Q4D doub 328 e n C28 C27 Q4D sing 329 n n O4 C34 Q4D sing 330 n n F2 C37 Q4D sing 331 n n C34 C35 Q4D sing 332 n n C36 N5 Q4D sing 333 n n C36 C37 Q4D sing 334 n n N5 C35 Q4D sing 335 n n N5 C38 Q4D sing 336 n n C37 C38 Q4D sing 337 n n C37 F1 Q4D sing 338 n n C4 H1 Q4D sing 339 n n C4 H2 Q4D sing 340 n n C3 H3 Q4D sing 341 n n C3 H4 Q4D sing 342 n n C2 H5 Q4D sing 343 n n C2 H6 Q4D sing 344 n n C18 H7 Q4D sing 345 n n C16 H8 Q4D sing 346 n n C15 H9 Q4D sing 347 n n C12 H10 Q4D sing 348 n n C12 H11 Q4D sing 349 n n C11 H12 Q4D sing 350 n n C11 H13 Q4D sing 351 n n C5 H14 Q4D sing 352 n n C6 H15 Q4D sing 353 n n C8 H16 Q4D sing 354 n n C19 H17 Q4D sing 355 n n C19 H18 Q4D sing 356 n n C20 H19 Q4D sing 357 n n C31 H20 Q4D sing 358 n n C31 H21 Q4D sing 359 n n C30 H22 Q4D sing 360 n n C30 H23 Q4D sing 361 n n C21 H24 Q4D sing 362 n n C22 H25 Q4D sing 363 n n C34 H26 Q4D sing 364 n n C34 H27 Q4D sing 365 n n C35 H28 Q4D sing 366 n n C35 H29 Q4D sing 367 n n C36 H31 Q4D sing 368 n n C36 H32 Q4D sing 369 n n C38 H33 Q4D sing 370 n n C38 H34 Q4D sing 371 n n C29 H35 Q4D sing 372 n n C28 H36 Q4D sing 373 n n C27 H37 Q4D sing 374 n n C27 H38 Q4D sing 375 n n C26 H39 Q4D sing 376 n n C26 H40 Q4D sing 377 n n C32 H41 Q4D sing 378 n n C32 H42 Q4D sing 379 n n C32 H43 Q4D sing 380 n n C24 H44 Q4D sing 381 n n C24 H45 Q4D sing 382 n n O2 H46 Q4D sing 383 n n N3 H47 Q4D sing 384 n n C40 H48 Q4D sing 385 n n C40 H49 Q4D sing 386 n n C40 H50 Q4D sing 387 n n C39 H51 Q4D sing 388 n n C39 H52 Q4D sing 389 n n C39 H53 Q4D sing 390 n n # _atom_sites.entry_id 6UD2 _atom_sites.fract_transf_matrix[1][1] 0.022713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011785 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q4D A 1 401 1 Q4D UNL . C 3 HOH A 1 501 71 HOH HOH . C 3 HOH A 2 502 32 HOH HOH . C 3 HOH A 3 503 60 HOH HOH . C 3 HOH A 4 504 91 HOH HOH . C 3 HOH A 5 505 65 HOH HOH . C 3 HOH A 6 506 53 HOH HOH . C 3 HOH A 7 507 73 HOH HOH . C 3 HOH A 8 508 85 HOH HOH . C 3 HOH A 9 509 96 HOH HOH . C 3 HOH A 10 510 52 HOH HOH . C 3 HOH A 11 511 3 HOH HOH . C 3 HOH A 12 512 35 HOH HOH . C 3 HOH A 13 513 94 HOH HOH . C 3 HOH A 14 514 15 HOH HOH . C 3 HOH A 15 515 49 HOH HOH . C 3 HOH A 16 516 4 HOH HOH . C 3 HOH A 17 517 90 HOH HOH . C 3 HOH A 18 518 19 HOH HOH . C 3 HOH A 19 519 54 HOH HOH . C 3 HOH A 20 520 68 HOH HOH . C 3 HOH A 21 521 42 HOH HOH . C 3 HOH A 22 522 39 HOH HOH . C 3 HOH A 23 523 22 HOH HOH . C 3 HOH A 24 524 62 HOH HOH . C 3 HOH A 25 525 57 HOH HOH . C 3 HOH A 26 526 12 HOH HOH . C 3 HOH A 27 527 33 HOH HOH . C 3 HOH A 28 528 29 HOH HOH . C 3 HOH A 29 529 14 HOH HOH . C 3 HOH A 30 530 34 HOH HOH . C 3 HOH A 31 531 47 HOH HOH . C 3 HOH A 32 532 27 HOH HOH . C 3 HOH A 33 533 9 HOH HOH . C 3 HOH A 34 534 11 HOH HOH . C 3 HOH A 35 535 70 HOH HOH . C 3 HOH A 36 536 55 HOH HOH . C 3 HOH A 37 537 18 HOH HOH . C 3 HOH A 38 538 93 HOH HOH . C 3 HOH A 39 539 61 HOH HOH . C 3 HOH A 40 540 25 HOH HOH . C 3 HOH A 41 541 30 HOH HOH . C 3 HOH A 42 542 8 HOH HOH . C 3 HOH A 43 543 13 HOH HOH . C 3 HOH A 44 544 92 HOH HOH . C 3 HOH A 45 545 1 HOH HOH . C 3 HOH A 46 546 46 HOH HOH . C 3 HOH A 47 547 50 HOH HOH . C 3 HOH A 48 548 69 HOH HOH . C 3 HOH A 49 549 10 HOH HOH . C 3 HOH A 50 550 76 HOH HOH . C 3 HOH A 51 551 80 HOH HOH . C 3 HOH A 52 552 31 HOH HOH . C 3 HOH A 53 553 89 HOH HOH . C 3 HOH A 54 554 75 HOH HOH . C 3 HOH A 55 555 23 HOH HOH . C 3 HOH A 56 556 40 HOH HOH . C 3 HOH A 57 557 26 HOH HOH . C 3 HOH A 58 558 2 HOH HOH . C 3 HOH A 59 559 78 HOH HOH . C 3 HOH A 60 560 28 HOH HOH . C 3 HOH A 61 561 81 HOH HOH . C 3 HOH A 62 562 56 HOH HOH . C 3 HOH A 63 563 74 HOH HOH . C 3 HOH A 64 564 24 HOH HOH . C 3 HOH A 65 565 79 HOH HOH . C 3 HOH A 66 566 38 HOH HOH . C 3 HOH A 67 567 16 HOH HOH . C 3 HOH A 68 568 6 HOH HOH . C 3 HOH A 69 569 5 HOH HOH . C 3 HOH A 70 570 41 HOH HOH . C 3 HOH A 71 571 7 HOH HOH . C 3 HOH A 72 572 72 HOH HOH . C 3 HOH A 73 573 66 HOH HOH . C 3 HOH A 74 574 17 HOH HOH . C 3 HOH A 75 575 83 HOH HOH . C 3 HOH A 76 576 20 HOH HOH . C 3 HOH A 77 577 48 HOH HOH . C 3 HOH A 78 578 51 HOH HOH . C 3 HOH A 79 579 88 HOH HOH . C 3 HOH A 80 580 58 HOH HOH . C 3 HOH A 81 581 59 HOH HOH . C 3 HOH A 82 582 87 HOH HOH . C 3 HOH A 83 583 45 HOH HOH . C 3 HOH A 84 584 37 HOH HOH . C 3 HOH A 85 585 21 HOH HOH . C 3 HOH A 86 586 44 HOH HOH . C 3 HOH A 87 587 86 HOH HOH . C 3 HOH A 88 588 43 HOH HOH . C 3 HOH A 89 589 67 HOH HOH . C 3 HOH A 90 590 77 HOH HOH . C 3 HOH A 91 591 95 HOH HOH . C 3 HOH A 92 592 84 HOH HOH . C 3 HOH A 93 593 36 HOH HOH . C 3 HOH A 94 594 63 HOH HOH . C 3 HOH A 95 595 82 HOH HOH . C 3 HOH A 96 596 64 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 Q4D . . . B 2 9.39 1.502 96.81 1 14.62 ? C4 Q4D 401 A 1 HETATM 2 C C3 Q4D . . . B 2 10.878 1.449 97.214 1 15.37 ? C3 Q4D 401 A 1 HETATM 3 C C2 Q4D . . . B 2 11.715 2.24 96.201 1 14.77 ? C2 Q4D 401 A 1 HETATM 4 C C13 Q4D . . . B 2 11.112 3.617 95.936 1 14.8 ? C13 Q4D 401 A 1 HETATM 5 C C18 Q4D . . . B 2 11.973 4.559 95.389 1 16.56 ? C18 Q4D 401 A 1 HETATM 6 C C17 Q4D . . . B 2 11.51 5.841 95.118 1 17.88 ? C17 Q4D 401 A 1 HETATM 7 CL CL1 Q4D . . . B 2 12.603 6.981 94.45 1 29.77 ? CL1 Q4D 401 A 1 HETATM 8 C C16 Q4D . . . B 2 10.206 6.225 95.392 1 16.72 ? C16 Q4D 401 A 1 HETATM 9 C C15 Q4D . . . B 2 9.341 5.284 95.941 1 14.89 ? C15 Q4D 401 A 1 HETATM 10 C C14 Q4D . . . B 2 9.781 3.981 96.205 1 14.09 ? C14 Q4D 401 A 1 HETATM 11 C C1 Q4D . . . B 2 8.801 2.946 96.808 1 14.01 ? C1 Q4D 401 A 1 HETATM 12 C C12 Q4D . . . B 2 8.458 3.346 98.24 1 13.65 ? C12 Q4D 401 A 1 HETATM 13 C C11 Q4D . . . B 2 7.478 2.9 95.979 1 13.46 ? C11 Q4D 401 A 1 HETATM 14 O O1 Q4D . . . B 2 6.545 3.947 96.431 1 13.78 ? O1 Q4D 401 A 1 HETATM 15 C C10 Q4D . . . B 2 5.692 3.46 97.4 1 13.68 ? C10 Q4D 401 A 1 HETATM 16 C C5 Q4D . . . B 2 4.35 3.748 97.131 1 13.94 ? C5 Q4D 401 A 1 HETATM 17 C C6 Q4D . . . B 2 3.366 3.303 98.029 1 14.92 ? C6 Q4D 401 A 1 HETATM 18 C C7 Q4D . . . B 2 3.737 2.596 99.177 1 15.16 ? C7 Q4D 401 A 1 HETATM 19 C C8 Q4D . . . B 2 5.085 2.316 99.433 1 14.51 ? C8 Q4D 401 A 1 HETATM 20 C C9 Q4D . . . B 2 6.086 2.752 98.548 1 13.5 ? C9 Q4D 401 A 1 HETATM 21 N N1 Q4D . . . B 2 7.375 2.529 98.82 1 13.21 ? N1 Q4D 401 A 1 HETATM 22 C C19 Q4D . . . B 2 7.842 1.682 99.965 1 14.2 ? C19 Q4D 401 A 1 HETATM 23 C C20 Q4D . . . B 2 7.662 2.455 101.305 1 14.55 ? C20 Q4D 401 A 1 HETATM 24 C C31 Q4D . . . B 2 8.772 3.513 101.523 1 15.19 ? C31 Q4D 401 A 1 HETATM 25 C C30 Q4D . . . B 2 8.896 3.02 102.973 1 15.51 ? C30 Q4D 401 A 1 HETATM 26 C C21 Q4D . . . B 2 8.27 1.695 102.509 1 15.6 ? C21 Q4D 401 A 1 HETATM 27 C C22 Q4D . . . B 2 7.248 1.103 103.501 1 17.25 ? C22 Q4D 401 A 1 HETATM 28 O O4 Q4D . . . B 2 8.095 0.332 104.415 1 19.99 ? O4 Q4D 401 A 1 HETATM 29 C C34 Q4D . . . B 2 7.374 -0.795 105.006 1 23.03 ? C34 Q4D 401 A 1 HETATM 30 C C35 Q4D . . . B 2 8.314 -1.389 106.063 1 25.85 ? C35 Q4D 401 A 1 HETATM 31 N N5 Q4D . . . B 2 9.533 -1.899 105.411 1 27.39 ? N5 Q4D 401 A 1 HETATM 32 C C36 Q4D . . . B 2 10.578 -0.856 105.245 1 30.86 ? C36 Q4D 401 A 1 HETATM 33 C C37 Q4D . . . B 2 11.587 -1.866 105.796 1 34.3 ? C37 Q4D 401 A 1 HETATM 34 F F1 Q4D . . . B 2 12.391 -1.333 106.703 1 36.56 ? F1 Q4D 401 A 1 HETATM 35 F F2 Q4D . . . B 2 12.257 -2.477 104.819 1 39.44 ? F2 Q4D 401 A 1 HETATM 36 C C38 Q4D . . . B 2 10.397 -2.623 106.376 1 31.76 ? C38 Q4D 401 A 1 HETATM 37 C C29 Q4D . . . B 2 6.475 1.977 104.28 1 18.17 ? C29 Q4D 401 A 1 HETATM 38 C C28 Q4D . . . B 2 5.089 1.839 104.288 1 19.97 ? C28 Q4D 401 A 1 HETATM 39 C C27 Q4D . . . B 2 4.226 2.787 105.123 1 19.66 ? C27 Q4D 401 A 1 HETATM 40 C C26 Q4D . . . B 2 3.198 3.532 104.262 1 20.56 ? C26 Q4D 401 A 1 HETATM 41 N N2 Q4D . . . B 2 2.087 2.644 103.86 1 21.09 ? N2 Q4D 401 A 1 HETATM 42 C C32 Q4D . . . B 2 1.091 2.141 104.828 1 22.82 ? C32 Q4D 401 A 1 HETATM 43 C C25 Q4D . . . B 2 1.852 2.265 102.591 1 19.52 ? C25 Q4D 401 A 1 HETATM 44 O O3 Q4D . . . B 2 0.913 1.53 102.254 1 20.04 ? O3 Q4D 401 A 1 HETATM 45 C C24 Q4D . . . B 2 2.852 2.764 101.53 1 17.62 ? C24 Q4D 401 A 1 HETATM 46 C C23 Q4D . . . B 2 2.665 2.078 100.167 1 17.37 ? C23 Q4D 401 A 1 HETATM 47 O O2 Q4D . . . B 2 1.346 2.324 99.69 1 18.13 ? O2 Q4D 401 A 1 HETATM 48 C C33 Q4D . . . B 2 2.857 0.543 100.22 1 20.03 ? C33 Q4D 401 A 1 HETATM 49 O O5 Q4D . . . B 2 2.257 -0.193 99.429 1 19.41 ? O5 Q4D 401 A 1 HETATM 50 N N3 Q4D . . . B 2 3.708 0.117 101.154 1 21.79 ? N3 Q4D 401 A 1 HETATM 51 S S1 Q4D . . . B 2 4.112 -1.451 101.363 1 26.68 ? S1 Q4D 401 A 1 HETATM 52 O O6 Q4D . . . B 2 5.491 -1.517 101.92 1 30.27 ? O6 Q4D 401 A 1 HETATM 53 O O7 Q4D . . . B 2 4.106 -2.18 100.062 1 27.86 ? O7 Q4D 401 A 1 HETATM 54 N N4 Q4D . . . B 2 3.124 -2.225 102.44 1 30.69 ? N4 Q4D 401 A 1 HETATM 55 C C40 Q4D . . . B 2 1.703 -2.177 102.06 1 30.12 ? C40 Q4D 401 A 1 HETATM 56 C C39 Q4D . . . B 2 3.285 -1.661 103.795 1 32.47 ? C39 Q4D 401 A 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 56 #