data_6UD6
#
_model_server_result.job_id            T5MKsYkIJhg_5hmrhTUzng 
_model_server_result.datetime_utc      '2024-11-14 10:34:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6ud6 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":202}' 
#
_entry.id    6UD6 
#
_exptl.entry_id    6UD6 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6UD6 
_cell.length_a            57.519 
_cell.length_b            57.519 
_cell.length_c            173.026 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UD6 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        80 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'I 41' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA dimeric 2 author_and_software_defined_assembly 1 
PISA tetrameric 4 software_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,B,C,D,E,F,G,H,I,J,K,L,M 1 1 
A,B,C,D,E,F,G,H,I,J,K,L,M 2 1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 6_545 -x,-y-1,z -1 0 0 0 -1 0 0 0 1 0 -57.519 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C ALA 108 A ALA 119 1_555 A N DV7 109 A DV7 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale2 A C DV7 109 A DV7 120 1_555 A N LYS 110 A LYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale3 B C ALA 108 B ALA 119 1_555 B N DV7 109 B DV7 120 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? 
covale ? covale4 B C DV7 109 B DV7 120 1_555 B N LYS 110 B LYS 121 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 149 n n 
C1 C2 GOL sing 150 n n 
C1 H11 GOL sing 151 n n 
C1 H12 GOL sing 152 n n 
O1 HO1 GOL sing 153 n n 
C2 O2 GOL sing 154 n n 
C2 C3 GOL sing 155 n n 
C2 H2 GOL sing 156 n n 
O2 HO2 GOL sing 157 n n 
C3 O3 GOL sing 158 n n 
C3 H31 GOL sing 159 n n 
C3 H32 GOL sing 160 n n 
O3 HO3 GOL sing 161 n n 
#
_atom_sites.entry_id                     6UD6 
_atom_sites.fract_transf_matrix[1][1]    0.017386 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017386 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.005779 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 GOL A 1 201 1 GOL GOL . 
D 2 GOL A 1 202 5 GOL GOL . 
E 2 GOL A 1 203 6 GOL GOL . 
F 3 CL A 1 204 1 CL CL . 
G 2 GOL B 1 201 2 GOL GOL . 
H 2 GOL B 1 202 3 GOL GOL . 
I 2 GOL B 1 203 4 GOL GOL . 
J 2 GOL B 1 204 7 GOL GOL . 
K 3 CL B 1 205 2 CL CL . 
L 4 HOH A 1 301 100 HOH HOH . 
L 4 HOH A 2 302 37 HOH HOH . 
L 4 HOH A 3 303 182 HOH HOH . 
L 4 HOH A 4 304 170 HOH HOH . 
L 4 HOH A 5 305 228 HOH HOH . 
L 4 HOH A 6 306 117 HOH HOH . 
L 4 HOH A 7 307 168 HOH HOH . 
L 4 HOH A 8 308 16 HOH HOH . 
L 4 HOH A 9 309 77 HOH HOH . 
L 4 HOH A 10 310 136 HOH HOH . 
L 4 HOH A 11 311 29 HOH HOH . 
L 4 HOH A 12 312 141 HOH HOH . 
L 4 HOH A 13 313 6 HOH HOH . 
L 4 HOH A 14 314 213 HOH HOH . 
L 4 HOH A 15 315 174 HOH HOH . 
L 4 HOH A 16 316 105 HOH HOH . 
L 4 HOH A 17 317 130 HOH HOH . 
L 4 HOH A 18 318 64 HOH HOH . 
L 4 HOH A 19 319 76 HOH HOH . 
L 4 HOH A 20 320 121 HOH HOH . 
L 4 HOH A 21 321 55 HOH HOH . 
L 4 HOH A 22 322 73 HOH HOH . 
L 4 HOH A 23 323 81 HOH HOH . 
L 4 HOH A 24 324 62 HOH HOH . 
L 4 HOH A 25 325 44 HOH HOH . 
L 4 HOH A 26 326 198 HOH HOH . 
L 4 HOH A 27 327 98 HOH HOH . 
L 4 HOH A 28 328 46 HOH HOH . 
L 4 HOH A 29 329 4 HOH HOH . 
L 4 HOH A 30 330 95 HOH HOH . 
L 4 HOH A 31 331 91 HOH HOH . 
L 4 HOH A 32 332 164 HOH HOH . 
L 4 HOH A 33 333 129 HOH HOH . 
L 4 HOH A 34 334 36 HOH HOH . 
L 4 HOH A 35 335 177 HOH HOH . 
L 4 HOH A 36 336 19 HOH HOH . 
L 4 HOH A 37 337 180 HOH HOH . 
L 4 HOH A 38 338 32 HOH HOH . 
L 4 HOH A 39 339 13 HOH HOH . 
L 4 HOH A 40 340 50 HOH HOH . 
L 4 HOH A 41 341 17 HOH HOH . 
L 4 HOH A 42 342 20 HOH HOH . 
L 4 HOH A 43 343 206 HOH HOH . 
L 4 HOH A 44 344 135 HOH HOH . 
L 4 HOH A 45 345 89 HOH HOH . 
L 4 HOH A 46 346 63 HOH HOH . 
L 4 HOH A 47 347 84 HOH HOH . 
L 4 HOH A 48 348 8 HOH HOH . 
L 4 HOH A 49 349 30 HOH HOH . 
L 4 HOH A 50 350 79 HOH HOH . 
L 4 HOH A 51 351 68 HOH HOH . 
L 4 HOH A 52 352 153 HOH HOH . 
L 4 HOH A 53 353 116 HOH HOH . 
L 4 HOH A 54 354 28 HOH HOH . 
L 4 HOH A 55 355 41 HOH HOH . 
L 4 HOH A 56 356 49 HOH HOH . 
L 4 HOH A 57 357 26 HOH HOH . 
L 4 HOH A 58 358 217 HOH HOH . 
L 4 HOH A 59 359 169 HOH HOH . 
L 4 HOH A 60 360 88 HOH HOH . 
L 4 HOH A 61 361 197 HOH HOH . 
L 4 HOH A 62 362 47 HOH HOH . 
L 4 HOH A 63 363 33 HOH HOH . 
L 4 HOH A 64 364 179 HOH HOH . 
L 4 HOH A 65 365 188 HOH HOH . 
L 4 HOH A 66 366 221 HOH HOH . 
L 4 HOH A 67 367 108 HOH HOH . 
L 4 HOH A 68 368 148 HOH HOH . 
L 4 HOH A 69 369 186 HOH HOH . 
L 4 HOH A 70 370 14 HOH HOH . 
L 4 HOH A 71 371 219 HOH HOH . 
L 4 HOH A 72 372 166 HOH HOH . 
L 4 HOH A 73 373 90 HOH HOH . 
L 4 HOH A 74 374 10 HOH HOH . 
L 4 HOH A 75 375 45 HOH HOH . 
L 4 HOH A 76 376 120 HOH HOH . 
L 4 HOH A 77 377 145 HOH HOH . 
L 4 HOH A 78 378 200 HOH HOH . 
L 4 HOH A 79 379 155 HOH HOH . 
L 4 HOH A 80 380 237 HOH HOH . 
L 4 HOH A 81 381 56 HOH HOH . 
L 4 HOH A 82 382 48 HOH HOH . 
L 4 HOH A 83 383 184 HOH HOH . 
L 4 HOH A 84 384 159 HOH HOH . 
L 4 HOH A 85 385 94 HOH HOH . 
L 4 HOH A 86 386 163 HOH HOH . 
L 4 HOH A 87 387 185 HOH HOH . 
L 4 HOH A 88 388 207 HOH HOH . 
L 4 HOH A 89 389 69 HOH HOH . 
L 4 HOH A 90 390 214 HOH HOH . 
L 4 HOH A 91 391 201 HOH HOH . 
L 4 HOH A 92 392 128 HOH HOH . 
L 4 HOH A 93 393 205 HOH HOH . 
L 4 HOH A 94 394 110 HOH HOH . 
L 4 HOH A 95 395 187 HOH HOH . 
L 4 HOH A 96 396 209 HOH HOH . 
L 4 HOH A 97 397 139 HOH HOH . 
L 4 HOH A 98 398 99 HOH HOH . 
L 4 HOH A 99 399 203 HOH HOH . 
L 4 HOH A 100 400 97 HOH HOH . 
L 4 HOH A 101 401 235 HOH HOH . 
L 4 HOH A 102 402 151 HOH HOH . 
L 4 HOH A 103 403 96 HOH HOH . 
M 4 HOH B 1 301 181 HOH HOH . 
M 4 HOH B 2 302 183 HOH HOH . 
M 4 HOH B 3 303 211 HOH HOH . 
M 4 HOH B 4 304 92 HOH HOH . 
M 4 HOH B 5 305 199 HOH HOH . 
M 4 HOH B 6 306 21 HOH HOH . 
M 4 HOH B 7 307 123 HOH HOH . 
M 4 HOH B 8 308 215 HOH HOH . 
M 4 HOH B 9 309 218 HOH HOH . 
M 4 HOH B 10 310 22 HOH HOH . 
M 4 HOH B 11 311 226 HOH HOH . 
M 4 HOH B 12 312 40 HOH HOH . 
M 4 HOH B 13 313 57 HOH HOH . 
M 4 HOH B 14 314 231 HOH HOH . 
M 4 HOH B 15 315 236 HOH HOH . 
M 4 HOH B 16 316 194 HOH HOH . 
M 4 HOH B 17 317 171 HOH HOH . 
M 4 HOH B 18 318 109 HOH HOH . 
M 4 HOH B 19 319 25 HOH HOH . 
M 4 HOH B 20 320 7 HOH HOH . 
M 4 HOH B 21 321 126 HOH HOH . 
M 4 HOH B 22 322 195 HOH HOH . 
M 4 HOH B 23 323 222 HOH HOH . 
M 4 HOH B 24 324 157 HOH HOH . 
M 4 HOH B 25 325 233 HOH HOH . 
M 4 HOH B 26 326 208 HOH HOH . 
M 4 HOH B 27 327 191 HOH HOH . 
M 4 HOH B 28 328 192 HOH HOH . 
M 4 HOH B 29 329 178 HOH HOH . 
M 4 HOH B 30 330 71 HOH HOH . 
M 4 HOH B 31 331 61 HOH HOH . 
M 4 HOH B 32 332 133 HOH HOH . 
M 4 HOH B 33 333 67 HOH HOH . 
M 4 HOH B 34 334 131 HOH HOH . 
M 4 HOH B 35 335 190 HOH HOH . 
M 4 HOH B 36 336 60 HOH HOH . 
M 4 HOH B 37 337 54 HOH HOH . 
M 4 HOH B 38 338 43 HOH HOH . 
M 4 HOH B 39 339 5 HOH HOH . 
M 4 HOH B 40 340 106 HOH HOH . 
M 4 HOH B 41 341 204 HOH HOH . 
M 4 HOH B 42 342 3 HOH HOH . 
M 4 HOH B 43 343 35 HOH HOH . 
M 4 HOH B 44 344 119 HOH HOH . 
M 4 HOH B 45 345 158 HOH HOH . 
M 4 HOH B 46 346 101 HOH HOH . 
M 4 HOH B 47 347 34 HOH HOH . 
M 4 HOH B 48 348 75 HOH HOH . 
M 4 HOH B 49 349 11 HOH HOH . 
M 4 HOH B 50 350 52 HOH HOH . 
M 4 HOH B 51 351 59 HOH HOH . 
M 4 HOH B 52 352 87 HOH HOH . 
M 4 HOH B 53 353 24 HOH HOH . 
M 4 HOH B 54 354 167 HOH HOH . 
M 4 HOH B 55 355 172 HOH HOH . 
M 4 HOH B 56 356 173 HOH HOH . 
M 4 HOH B 57 357 85 HOH HOH . 
M 4 HOH B 58 358 78 HOH HOH . 
M 4 HOH B 59 359 9 HOH HOH . 
M 4 HOH B 60 360 107 HOH HOH . 
M 4 HOH B 61 361 146 HOH HOH . 
M 4 HOH B 62 362 15 HOH HOH . 
M 4 HOH B 63 363 160 HOH HOH . 
M 4 HOH B 64 364 65 HOH HOH . 
M 4 HOH B 65 365 51 HOH HOH . 
M 4 HOH B 66 366 27 HOH HOH . 
M 4 HOH B 67 367 113 HOH HOH . 
M 4 HOH B 68 368 31 HOH HOH . 
M 4 HOH B 69 369 165 HOH HOH . 
M 4 HOH B 70 370 23 HOH HOH . 
M 4 HOH B 71 371 118 HOH HOH . 
M 4 HOH B 72 372 80 HOH HOH . 
M 4 HOH B 73 373 70 HOH HOH . 
M 4 HOH B 74 374 38 HOH HOH . 
M 4 HOH B 75 375 210 HOH HOH . 
M 4 HOH B 76 376 142 HOH HOH . 
M 4 HOH B 77 377 39 HOH HOH . 
M 4 HOH B 78 378 18 HOH HOH . 
M 4 HOH B 79 379 212 HOH HOH . 
M 4 HOH B 80 380 125 HOH HOH . 
M 4 HOH B 81 381 115 HOH HOH . 
M 4 HOH B 82 382 83 HOH HOH . 
M 4 HOH B 83 383 147 HOH HOH . 
M 4 HOH B 84 384 175 HOH HOH . 
M 4 HOH B 85 385 12 HOH HOH . 
M 4 HOH B 86 386 176 HOH HOH . 
M 4 HOH B 87 387 156 HOH HOH . 
M 4 HOH B 88 388 149 HOH HOH . 
M 4 HOH B 89 389 42 HOH HOH . 
M 4 HOH B 90 390 66 HOH HOH . 
M 4 HOH B 91 391 58 HOH HOH . 
M 4 HOH B 92 392 122 HOH HOH . 
M 4 HOH B 93 393 137 HOH HOH . 
M 4 HOH B 94 394 224 HOH HOH . 
M 4 HOH B 95 395 102 HOH HOH . 
M 4 HOH B 96 396 232 HOH HOH . 
M 4 HOH B 97 397 74 HOH HOH . 
M 4 HOH B 98 398 154 HOH HOH . 
M 4 HOH B 99 399 223 HOH HOH . 
M 4 HOH B 100 400 143 HOH HOH . 
M 4 HOH B 101 401 216 HOH HOH . 
M 4 HOH B 102 402 127 HOH HOH . 
M 4 HOH B 103 403 196 HOH HOH . 
M 4 HOH B 104 404 161 HOH HOH . 
M 4 HOH B 105 405 193 HOH HOH . 
M 4 HOH B 106 406 144 HOH HOH . 
M 4 HOH B 107 407 111 HOH HOH . 
M 4 HOH B 108 408 104 HOH HOH . 
M 4 HOH B 109 409 202 HOH HOH . 
M 4 HOH B 110 410 124 HOH HOH . 
M 4 HOH B 111 411 140 HOH HOH . 
M 4 HOH B 112 412 230 HOH HOH . 
M 4 HOH B 113 413 134 HOH HOH . 
M 4 HOH B 114 414 225 HOH HOH . 
M 4 HOH B 115 415 220 HOH HOH . 
M 4 HOH B 116 416 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . H 2 -15.253 -15.125 42.41 1 35.62 ? C1 GOL 202 B 1 
HETATM 2 O O1 GOL . . . H 2 -14.82 -14.721 41.126 1 38 ? O1 GOL 202 B 1 
HETATM 3 C C2 GOL . . . H 2 -13.989 -15.611 43.174 1 34.8 ? C2 GOL 202 B 1 
HETATM 4 O O2 GOL . . . H 2 -12.845 -14.981 42.715 1 43 ? O2 GOL 202 B 1 
HETATM 5 C C3 GOL . . . H 2 -14.262 -15.271 44.668 1 31.71 ? C3 GOL 202 B 1 
HETATM 6 O O3 GOL . . . H 2 -13.828 -13.969 44.865 1 45.97 ? O3 GOL 202 B 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    7 
_model_server_stats.query_time_ms           295 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           6 
#