data_6UDA # _model_server_result.job_id -BC041Ejhg_YWQUdqNPmzg _model_server_result.datetime_utc '2024-12-11 22:18:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uda # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"S","auth_seq_id":606}' # _entry.id 6UDA # _exptl.entry_id 6UDA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 221.208 _entity.id 6 _entity.src_method man _entity.type non-polymer _entity.pdbx_description 2-acetamido-2-deoxy-beta-D-glucopyranose _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 P N N ? 6 Q N N ? 6 R N N ? 6 S N N ? 6 T N N ? 6 U N N # _pdbx_entity_branch.entity_id 5 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 5 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 5 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 5 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 5 n M NAG 1 B 1 NAG A 601 NAG 5 n M NAG 2 B 2 NAG A 602 NAG 5 n M BMA 3 B 3 BMA A 603 BMA 5 n M MAN 4 B 4 MAN A 604 MAN 5 n N NAG 1 M 1 NAG E 601 NAG 5 n N NAG 2 M 2 NAG E 602 NAG 5 n N BMA 3 M 3 BMA E 603 BMA 5 n N MAN 4 M 4 MAN E 604 MAN 5 n O NAG 1 N 1 NAG I 601 NAG 5 n O NAG 2 N 2 NAG I 602 NAG 5 n O BMA 3 N 3 BMA I 603 BMA 5 n O MAN 4 N 4 MAN I 604 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 113 A CYS 119 1_555 A SG CYS 190 A CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf2 A SG CYS 120 A CYS 126 1_555 A SG CYS 181 A CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 A SG CYS 125 A CYS 131 1_555 A SG CYS 142 A CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf4 A SG CYS 213 A CYS 228 1_555 A SG CYS 224 A CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 281 A CYS 296 1_555 A SG CYS 315 A CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf6 A SG CYS 361 A CYS 378 1_555 A SG CYS 428 A CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf7 A SG CYS 368 A CYS 385 1_555 A SG CYS 401 A CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf8 A SG CYS 482 A CYS 499 1_555 C SG CYS 101 Z CYS 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? disulf ? disulf9 B SG CYS 170 C CYS 137 1_555 B SG CYS 226 C CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf10 C SG CYS 94 Z CYS 598 1_555 C SG CYS 100 Z CYS 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf11 D SG CYS 44 D CYS 23 1_555 D SG CYS 109 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf12 D SG CYS 154 D CYS 134 1_555 D SG CYS 214 D CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf13 E SG CYS 113 E CYS 119 1_555 E SG CYS 190 E CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf14 E SG CYS 120 E CYS 126 1_555 E SG CYS 181 E CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf15 E SG CYS 125 E CYS 131 1_555 E SG CYS 142 E CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf16 E SG CYS 213 E CYS 228 1_555 E SG CYS 224 E CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf17 E SG CYS 281 E CYS 296 1_555 E SG CYS 315 E CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf18 E SG CYS 361 E CYS 378 1_555 E SG CYS 428 E CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf19 E SG CYS 368 E CYS 385 1_555 E SG CYS 401 E CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf20 E SG CYS 482 E CYS 499 1_555 F SG CYS 101 F CYS 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? disulf ? disulf21 F SG CYS 94 F CYS 598 1_555 F SG CYS 100 F CYS 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf22 G SG CYS 170 G CYS 137 1_555 G SG CYS 226 G CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf23 H SG CYS 44 H CYS 23 1_555 H SG CYS 109 H CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf24 H SG CYS 154 H CYS 134 1_555 H SG CYS 214 H CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? disulf ? disulf25 I SG CYS 113 I CYS 119 1_555 I SG CYS 190 I CYS 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.116 ? disulf ? disulf26 I SG CYS 120 I CYS 126 1_555 I SG CYS 181 I CYS 196 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf27 I SG CYS 125 I CYS 131 1_555 I SG CYS 142 I CYS 157 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? disulf ? disulf28 I SG CYS 213 I CYS 228 1_555 I SG CYS 224 I CYS 239 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf29 I SG CYS 281 I CYS 296 1_555 I SG CYS 315 I CYS 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf30 I SG CYS 361 I CYS 378 1_555 I SG CYS 428 I CYS 445 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.048 ? disulf ? disulf31 I SG CYS 368 I CYS 385 1_555 I SG CYS 401 I CYS 418 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? disulf ? disulf32 I SG CYS 482 I CYS 499 1_555 J SG CYS 101 J CYS 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? disulf ? disulf33 J SG CYS 94 J CYS 598 1_555 J SG CYS 100 J CYS 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? disulf ? disulf34 K SG CYS 170 K CYS 137 1_555 K SG CYS 226 K CYS 193 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf35 L SG CYS 44 L CYS 23 1_555 L SG CYS 109 L CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf36 L SG CYS 154 L CYS 134 1_555 L SG CYS 214 L CYS 194 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? covale ? covale1 M O4 NAG . B NAG 1 1_555 M C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale2 M O4 NAG . B NAG 2 1_555 M C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale3 M O3 BMA . B BMA 3 1_555 M C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.401 ? covale ? covale4 N O4 NAG . M NAG 1 1_555 N C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale5 N O4 NAG . M NAG 2 1_555 N C1 BMA . M BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale6 N O3 BMA . M BMA 3 1_555 N C1 MAN . M MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? covale ? covale7 O O4 NAG . N NAG 1 1_555 O C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.397 ? covale ? covale8 O O4 NAG . N NAG 2 1_555 O C1 BMA . N BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.421 ? covale ? covale9 O O3 BMA . N BMA 3 1_555 O C1 MAN . N MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.402 ? # _chem_comp.formula 'C8 H15 N O6' _chem_comp.formula_weight 221.208 _chem_comp.id NAG _chem_comp.mon_nstd_flag . _chem_comp.name 2-acetamido-2-deoxy-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms N-acetyl-beta-D-glucosamine;2-acetamido-2-deoxy-beta-D-glucose;2-acetamido-2-deoxy-D-glucose;2-acetamido-2-deoxy-glucose;N-ACETYL-D-GLUCOSAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 NAG sing 283 n n C1 O1 NAG sing 284 n n C1 O5 NAG sing 285 n n C1 H1 NAG sing 286 n n C2 C3 NAG sing 287 n n C2 N2 NAG sing 288 n n C2 H2 NAG sing 289 n n C3 C4 NAG sing 290 n n C3 O3 NAG sing 291 n n C3 H3 NAG sing 292 n n C4 C5 NAG sing 293 n n C4 O4 NAG sing 294 n n C4 H4 NAG sing 295 n n C5 C6 NAG sing 296 n n C5 O5 NAG sing 297 n n C5 H5 NAG sing 298 n n C6 O6 NAG sing 299 n n C6 H61 NAG sing 300 n n C6 H62 NAG sing 301 n n C7 C8 NAG sing 302 n n C7 N2 NAG sing 303 n n C7 O7 NAG doub 304 n n C8 H81 NAG sing 305 n n C8 H82 NAG sing 306 n n C8 H83 NAG sing 307 n n N2 HN2 NAG sing 308 n n O1 HO1 NAG sing 309 n n O3 HO3 NAG sing 310 n n O4 HO4 NAG sing 311 n n O6 HO6 NAG sing 312 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version NAG DGlcpNAcb 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 NAG N-acetyl-b-D-glucopyranosamine 'COMMON NAME' GMML 1 NAG b-D-GlcpNAc 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 NAG GlcNAc 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 6UDA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 6 NAG A 1 605 606 NAG NAG . Q 6 NAG A 1 606 607 NAG NAG . R 6 NAG E 1 605 606 NAG NAG . S 6 NAG E 1 606 607 NAG NAG . T 6 NAG I 1 605 606 NAG NAG . U 6 NAG I 1 606 607 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 NAG . . . S 6 129.73 153.564 188.841 1 30 ? C1 NAG 606 E 1 HETATM 2 C C2 NAG . . . S 6 129.132 153.758 190.228 1 30 ? C2 NAG 606 E 1 HETATM 3 C C3 NAG . . . S 6 129.511 152.582 191.113 1 30 ? C3 NAG 606 E 1 HETATM 4 C C4 NAG . . . S 6 129.054 151.292 190.448 1 30 ? C4 NAG 606 E 1 HETATM 5 C C5 NAG . . . S 6 129.656 151.183 189.054 1 30 ? C5 NAG 606 E 1 HETATM 6 C C6 NAG . . . S 6 129.156 149.927 188.351 1 30 ? C6 NAG 606 E 1 HETATM 7 C C7 NAG . . . S 6 129.24 156.179 190.397 1 30 ? C7 NAG 606 E 1 HETATM 8 C C8 NAG . . . S 6 130.14 157.323 190.763 1 30 ? C8 NAG 606 E 1 HETATM 9 N N2 NAG . . . S 6 129.635 154.982 190.819 1 30 ? N2 NAG 606 E 1 HETATM 10 O O3 NAG . . . S 6 128.874 152.715 192.387 1 30 ? O3 NAG 606 E 1 HETATM 11 O O4 NAG . . . S 6 129.468 150.172 191.237 1 30 ? O4 NAG 606 E 1 HETATM 12 O O5 NAG . . . S 6 129.293 152.324 188.28 1 30 ? O5 NAG 606 E 1 HETATM 13 O O6 NAG . . . S 6 127.763 150.077 188.055 1 30 ? O6 NAG 606 E 1 HETATM 14 O O7 NAG . . . S 6 128.216 156.337 189.755 1 30 ? O7 NAG 606 E 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 28 _model_server_stats.query_time_ms 216 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #