data_6UDC # _model_server_result.job_id dn7tgzY0XNy69ZilS7uMnA _model_server_result.datetime_utc '2024-11-27 21:57:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6udc # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":5001}' # _entry.id 6UDC # _exptl.entry_id 6UDC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 244.311 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description BIOTIN _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 112.26 _cell.angle_gamma 90 _cell.entry_id 6UDC _cell.length_a 50.812 _cell.length_b 98.281 _cell.length_c 52.647 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UDC _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 G N N ? 2 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C LEU 98 A LEU 109 1_555 A N DV7 99 A DV7 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale2 A C DV7 99 A DV7 110 1_555 A N THR 100 A THR 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale3 B C LEU 98 B LEU 109 1_555 B N DV7 99 B DV7 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.317 ? covale ? covale4 B C DV7 99 B DV7 110 1_555 B N THR 100 B THR 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale5 C C LEU 98 C LEU 109 1_555 C N DV7 99 C DV7 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 C C DV7 99 C DV7 110 1_555 C N THR 100 C THR 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale7 D C LEU 98 D LEU 109 1_555 D N DV7 99 D DV7 110 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale8 D C DV7 99 D DV7 110 1_555 D N THR 100 D THR 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.349 ? # _chem_comp.formula 'C10 H16 N2 O3 S' _chem_comp.formula_weight 244.311 _chem_comp.id BTN _chem_comp.mon_nstd_flag . _chem_comp.name BIOTIN _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 O11 BTN doub 70 n n C11 O12 BTN sing 71 n n C11 C10 BTN sing 72 n n O12 HO2 BTN sing 73 n n C10 C9 BTN sing 74 n n C10 H101 BTN sing 75 n n C10 H102 BTN sing 76 n n C9 C8 BTN sing 77 n n C9 H91 BTN sing 78 n n C9 H92 BTN sing 79 n n C8 C7 BTN sing 80 n n C8 H81 BTN sing 81 n n C8 H82 BTN sing 82 n n C7 C2 BTN sing 83 n n C7 H71 BTN sing 84 n n C7 H72 BTN sing 85 n n C2 S1 BTN sing 86 n n C2 C4 BTN sing 87 n n C2 H2 BTN sing 88 n n S1 C6 BTN sing 89 n n C6 C5 BTN sing 90 n n C6 H61 BTN sing 91 n n C6 H62 BTN sing 92 n n C5 N1 BTN sing 93 n n C5 C4 BTN sing 94 n n C5 H5 BTN sing 95 n n N1 C3 BTN sing 96 n n N1 HN1 BTN sing 97 n n C3 O3 BTN doub 98 n n C3 N2 BTN sing 99 n n N2 C4 BTN sing 100 n n N2 HN2 BTN sing 101 n n C4 H4 BTN sing 102 n n # _atom_sites.entry_id 6UDC _atom_sites.fract_transf_matrix[1][1] 0.01968 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.008056 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010175 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.020524 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 BTN A 1 5001 5001 BTN BTN . F 2 BTN B 1 5001 5001 BTN BTN . G 2 BTN C 1 5001 5001 BTN BTN . H 2 BTN D 1 5001 5001 BTN BTN . I 3 HOH A 1 5101 25 HOH HOH . I 3 HOH A 2 5102 51 HOH HOH . I 3 HOH A 3 5103 5 HOH HOH . I 3 HOH A 4 5104 41 HOH HOH . I 3 HOH A 5 5105 32 HOH HOH . I 3 HOH A 6 5106 35 HOH HOH . I 3 HOH A 7 5107 1 HOH HOH . I 3 HOH A 8 5108 20 HOH HOH . I 3 HOH A 9 5109 19 HOH HOH . I 3 HOH A 10 5110 34 HOH HOH . J 3 HOH B 1 5101 14 HOH HOH . J 3 HOH B 2 5102 15 HOH HOH . J 3 HOH B 3 5103 7 HOH HOH . J 3 HOH B 4 5104 45 HOH HOH . J 3 HOH B 5 5105 3 HOH HOH . J 3 HOH B 6 5106 18 HOH HOH . J 3 HOH B 7 5107 44 HOH HOH . J 3 HOH B 8 5108 12 HOH HOH . J 3 HOH B 9 5109 37 HOH HOH . J 3 HOH B 10 5110 42 HOH HOH . J 3 HOH B 11 5111 47 HOH HOH . K 3 HOH C 1 5101 24 HOH HOH . K 3 HOH C 2 5102 4 HOH HOH . K 3 HOH C 3 5103 11 HOH HOH . K 3 HOH C 4 5104 23 HOH HOH . K 3 HOH C 5 5105 6 HOH HOH . K 3 HOH C 6 5106 52 HOH HOH . K 3 HOH C 7 5107 38 HOH HOH . K 3 HOH C 8 5108 40 HOH HOH . K 3 HOH C 9 5109 21 HOH HOH . K 3 HOH C 10 5110 46 HOH HOH . K 3 HOH C 11 5111 43 HOH HOH . K 3 HOH C 12 5112 39 HOH HOH . K 3 HOH C 13 5113 16 HOH HOH . L 3 HOH D 1 5101 29 HOH HOH . L 3 HOH D 2 5102 26 HOH HOH . L 3 HOH D 3 5103 27 HOH HOH . L 3 HOH D 4 5104 10 HOH HOH . L 3 HOH D 5 5105 48 HOH HOH . L 3 HOH D 6 5106 22 HOH HOH . L 3 HOH D 7 5107 49 HOH HOH . L 3 HOH D 8 5108 13 HOH HOH . L 3 HOH D 9 5109 9 HOH HOH . L 3 HOH D 10 5110 17 HOH HOH . L 3 HOH D 11 5111 33 HOH HOH . L 3 HOH D 12 5112 36 HOH HOH . L 3 HOH D 13 5113 30 HOH HOH . L 3 HOH D 14 5114 2 HOH HOH . L 3 HOH D 15 5115 50 HOH HOH . L 3 HOH D 16 5116 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 BTN . . . H 2 -1.41 -30.762 -4.879 1 30.68 ? C11 BTN 5001 D 1 HETATM 2 O O11 BTN . . . H 2 -1.663 -29.783 -5.621 1 36.12 ? O11 BTN 5001 D 1 HETATM 3 O O12 BTN . . . H 2 -1.455 -30.741 -3.643 1 29.94 ? O12 BTN 5001 D 1 HETATM 4 C C10 BTN . . . H 2 -1.047 -32.04 -5.517 1 27.55 ? C10 BTN 5001 D 1 HETATM 5 C C9 BTN . . . H 2 -0.027 -32.816 -4.708 1 28.06 ? C9 BTN 5001 D 1 HETATM 6 C C8 BTN . . . H 2 1.35 -32.084 -4.703 1 27.53 ? C8 BTN 5001 D 1 HETATM 7 C C7 BTN . . . H 2 2.401 -32.945 -4.024 1 28.02 ? C7 BTN 5001 D 1 HETATM 8 C C2 BTN . . . H 2 3.78 -32.311 -4.073 1 30.53 ? C2 BTN 5001 D 1 HETATM 9 S S1 BTN . . . H 2 4.53 -32.33 -5.696 1 31.22 ? S1 BTN 5001 D 1 HETATM 10 C C6 BTN . . . H 2 6.111 -31.998 -4.964 1 30.23 ? C6 BTN 5001 D 1 HETATM 11 C C5 BTN . . . H 2 6.19 -32.741 -3.61 1 32.72 ? C5 BTN 5001 D 1 HETATM 12 N N1 BTN . . . H 2 6.765 -34.015 -3.852 1 32.05 ? N1 BTN 5001 D 1 HETATM 13 C C3 BTN . . . H 2 5.895 -35.009 -3.71 1 35.48 ? C3 BTN 5001 D 1 HETATM 14 O O3 BTN . . . H 2 6.164 -36.172 -3.901 1 34.17 ? O3 BTN 5001 D 1 HETATM 15 N N2 BTN . . . H 2 4.712 -34.536 -3.32 1 34.26 ? N2 BTN 5001 D 1 HETATM 16 C C4 BTN . . . H 2 4.762 -33.09 -3.147 1 33.66 ? C4 BTN 5001 D 1 # _model_server_stats.io_time_ms 48 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 16 #