data_6UDI # _model_server_result.job_id Immkx2bTlZplJCcVI1_sBA _model_server_result.datetime_utc '2024-11-07 21:56:20' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6udi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6UDI # _exptl.entry_id 6UDI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 715.299 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4S,7aR,9aR,10S,11E,18R)-6'-chloro-N-(dimethylsulfamoyl)-18-hydroxy-10-methoxy-15-methyl-16-oxo-3',4',7,7a,8,9,9a,10,13,14,15,16,17,18-tetradecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)cyclobuta[n][1,4]oxazepino[4,3-a][1,8]diazacyclohexadecine-4,1'-naphthalene]-18-carboxamide" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UDI _cell.length_a 43.803 _cell.length_b 89.673 _cell.length_c 84.725 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UDI _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_557 -x,y,-z+5/2 -1 0 0 0 1 0 0 0 -1 0 0 211.8125 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C36 H47 Cl N4 O7 S' _chem_comp.formula_weight 715.299 _chem_comp.id Q4S _chem_comp.mon_nstd_flag . _chem_comp.name "(4S,7aR,9aR,10S,11E,18R)-6'-chloro-N-(dimethylsulfamoyl)-18-hydroxy-10-methoxy-15-methyl-16-oxo-3',4',7,7a,8,9,9a,10,13,14,15,16,17,18-tetradecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)cyclobuta[n][1,4]oxazepino[4,3-a][1,8]diazacyclohexadecine-4,1'-naphthalene]-18-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C17 Q4S sing 277 n n C17 C16 Q4S doub 278 n y C17 C18 Q4S sing 279 n y C16 C15 Q4S sing 280 n y C18 C13 Q4S doub 281 n y C15 C14 Q4S doub 282 n y C13 C14 Q4S sing 283 n y C13 C2 Q4S sing 284 n n C11 O1 Q4S sing 285 n n C11 C1 Q4S sing 286 n n C14 C1 Q4S sing 287 n n C2 C3 Q4S sing 288 n n O1 C10 Q4S sing 289 n n C4 C1 Q4S sing 290 n n C4 C3 Q4S sing 291 n n C1 C12 Q4S sing 292 n n C5 C10 Q4S doub 293 n y C5 C6 Q4S sing 294 n y C10 C9 Q4S sing 295 n y C6 C7 Q4S doub 296 n y C12 N1 Q4S sing 297 n n C9 N1 Q4S sing 298 n n C9 C8 Q4S doub 299 n y N1 C19 Q4S sing 300 n n C7 C8 Q4S sing 301 n y C7 C23 Q4S sing 302 n n O5 C33 Q4S doub 303 n n O2 C23 Q4S sing 304 n n C19 C20 Q4S sing 305 n n O6 S1 Q4S doub 306 n n C23 C33 Q4S sing 307 n n C23 C24 Q4S sing 308 n n C33 N3 Q4S sing 309 n n N3 S1 Q4S sing 310 n n C20 C31 Q4S sing 311 n n C20 C21 Q4S sing 312 n n S1 O7 Q4S doub 313 n n S1 N4 Q4S sing 314 n n C24 C25 Q4S sing 315 n n C31 C30 Q4S sing 316 n n C35 N4 Q4S sing 317 n n O3 C25 Q4S doub 318 n n C21 C30 Q4S sing 319 n n C21 C22 Q4S sing 320 n n N4 C36 Q4S sing 321 n n C25 N2 Q4S sing 322 n n C22 C29 Q4S sing 323 n n C22 O4 Q4S sing 324 n n N2 C26 Q4S sing 325 n n N2 C32 Q4S sing 326 n n C26 C27 Q4S sing 327 n n C29 C28 Q4S doub 328 e n C28 C27 Q4S sing 329 n n O4 C34 Q4S sing 330 n n C4 H1 Q4S sing 331 n n C4 H2 Q4S sing 332 n n C3 H3 Q4S sing 333 n n C3 H4 Q4S sing 334 n n C2 H5 Q4S sing 335 n n C2 H6 Q4S sing 336 n n C18 H7 Q4S sing 337 n n C16 H8 Q4S sing 338 n n C15 H9 Q4S sing 339 n n C12 H10 Q4S sing 340 n n C12 H11 Q4S sing 341 n n C11 H12 Q4S sing 342 n n C11 H13 Q4S sing 343 n n C5 H14 Q4S sing 344 n n C6 H15 Q4S sing 345 n n C8 H16 Q4S sing 346 n n C19 H17 Q4S sing 347 n n C19 H18 Q4S sing 348 n n C20 H19 Q4S sing 349 n n C31 H20 Q4S sing 350 n n C31 H21 Q4S sing 351 n n C30 H22 Q4S sing 352 n n C30 H23 Q4S sing 353 n n C21 H24 Q4S sing 354 n n C22 H25 Q4S sing 355 n n C34 H26 Q4S sing 356 n n C34 H27 Q4S sing 357 n n C34 H28 Q4S sing 358 n n C29 H29 Q4S sing 359 n n C28 H30 Q4S sing 360 n n C27 H31 Q4S sing 361 n n C27 H32 Q4S sing 362 n n C26 H33 Q4S sing 363 n n C26 H34 Q4S sing 364 n n C32 H35 Q4S sing 365 n n C32 H36 Q4S sing 366 n n C32 H37 Q4S sing 367 n n C24 H38 Q4S sing 368 n n C24 H39 Q4S sing 369 n n O2 H40 Q4S sing 370 n n N3 H41 Q4S sing 371 n n C36 H42 Q4S sing 372 n n C36 H43 Q4S sing 373 n n C36 H44 Q4S sing 374 n n C35 H45 Q4S sing 375 n n C35 H46 Q4S sing 376 n n C35 H47 Q4S sing 377 n n # _atom_sites.entry_id 6UDI _atom_sites.fract_transf_matrix[1][1] 0.022829 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011152 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011803 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q4S A 1 401 1 Q4S UNL . C 3 HOH A 1 501 58 HOH HOH . C 3 HOH A 2 502 37 HOH HOH . C 3 HOH A 3 503 23 HOH HOH . C 3 HOH A 4 504 42 HOH HOH . C 3 HOH A 5 505 72 HOH HOH . C 3 HOH A 6 506 17 HOH HOH . C 3 HOH A 7 507 69 HOH HOH . C 3 HOH A 8 508 12 HOH HOH . C 3 HOH A 9 509 52 HOH HOH . C 3 HOH A 10 510 33 HOH HOH . C 3 HOH A 11 511 34 HOH HOH . C 3 HOH A 12 512 47 HOH HOH . C 3 HOH A 13 513 67 HOH HOH . C 3 HOH A 14 514 1 HOH HOH . C 3 HOH A 15 515 27 HOH HOH . C 3 HOH A 16 516 46 HOH HOH . C 3 HOH A 17 517 40 HOH HOH . C 3 HOH A 18 518 3 HOH HOH . C 3 HOH A 19 519 32 HOH HOH . C 3 HOH A 20 520 31 HOH HOH . C 3 HOH A 21 521 4 HOH HOH . C 3 HOH A 22 522 75 HOH HOH . C 3 HOH A 23 523 55 HOH HOH . C 3 HOH A 24 524 24 HOH HOH . C 3 HOH A 25 525 7 HOH HOH . C 3 HOH A 26 526 15 HOH HOH . C 3 HOH A 27 527 10 HOH HOH . C 3 HOH A 28 528 18 HOH HOH . C 3 HOH A 29 529 54 HOH HOH . C 3 HOH A 30 530 43 HOH HOH . C 3 HOH A 31 531 49 HOH HOH . C 3 HOH A 32 532 14 HOH HOH . C 3 HOH A 33 533 19 HOH HOH . C 3 HOH A 34 534 26 HOH HOH . C 3 HOH A 35 535 57 HOH HOH . C 3 HOH A 36 536 62 HOH HOH . C 3 HOH A 37 537 9 HOH HOH . C 3 HOH A 38 538 21 HOH HOH . C 3 HOH A 39 539 60 HOH HOH . C 3 HOH A 40 540 25 HOH HOH . C 3 HOH A 41 541 11 HOH HOH . C 3 HOH A 42 542 22 HOH HOH . C 3 HOH A 43 543 59 HOH HOH . C 3 HOH A 44 544 5 HOH HOH . C 3 HOH A 45 545 29 HOH HOH . C 3 HOH A 46 546 20 HOH HOH . C 3 HOH A 47 547 2 HOH HOH . C 3 HOH A 48 548 8 HOH HOH . C 3 HOH A 49 549 6 HOH HOH . C 3 HOH A 50 550 13 HOH HOH . C 3 HOH A 51 551 66 HOH HOH . C 3 HOH A 52 552 16 HOH HOH . C 3 HOH A 53 553 36 HOH HOH . C 3 HOH A 54 554 50 HOH HOH . C 3 HOH A 55 555 45 HOH HOH . C 3 HOH A 56 556 44 HOH HOH . C 3 HOH A 57 557 48 HOH HOH . C 3 HOH A 58 558 41 HOH HOH . C 3 HOH A 59 559 68 HOH HOH . C 3 HOH A 60 560 56 HOH HOH . C 3 HOH A 61 561 64 HOH HOH . C 3 HOH A 62 562 70 HOH HOH . C 3 HOH A 63 563 76 HOH HOH . C 3 HOH A 64 564 30 HOH HOH . C 3 HOH A 65 565 39 HOH HOH . C 3 HOH A 66 566 65 HOH HOH . C 3 HOH A 67 567 53 HOH HOH . C 3 HOH A 68 568 28 HOH HOH . C 3 HOH A 69 569 61 HOH HOH . C 3 HOH A 70 570 71 HOH HOH . C 3 HOH A 71 571 63 HOH HOH . C 3 HOH A 72 572 51 HOH HOH . C 3 HOH A 73 573 74 HOH HOH . C 3 HOH A 74 574 38 HOH HOH . C 3 HOH A 75 575 35 HOH HOH . C 3 HOH A 76 576 73 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 Q4S . . . B 2 9.311 1.48 96.599 1 18.51 ? C4 Q4S 401 A 1 HETATM 2 C C3 Q4S . . . B 2 10.761 1.505 97.085 1 18.19 ? C3 Q4S 401 A 1 HETATM 3 C C2 Q4S . . . B 2 11.624 2.231 96.059 1 17.91 ? C2 Q4S 401 A 1 HETATM 4 C C13 Q4S . . . B 2 11.02 3.602 95.78 1 18.25 ? C13 Q4S 401 A 1 HETATM 5 C C18 Q4S . . . B 2 11.874 4.558 95.244 1 20.02 ? C18 Q4S 401 A 1 HETATM 6 C C17 Q4S . . . B 2 11.42 5.839 94.962 1 22.2 ? C17 Q4S 401 A 1 HETATM 7 CL CL1 Q4S . . . B 2 12.498 7.01 94.308 1 35.52 ? CL1 Q4S 401 A 1 HETATM 8 C C16 Q4S . . . B 2 10.108 6.193 95.22 1 20.07 ? C16 Q4S 401 A 1 HETATM 9 C C15 Q4S . . . B 2 9.248 5.234 95.75 1 19.05 ? C15 Q4S 401 A 1 HETATM 10 C C14 Q4S . . . B 2 9.681 3.939 96.031 1 18.4 ? C14 Q4S 401 A 1 HETATM 11 C C1 Q4S . . . B 2 8.687 2.896 96.624 1 17.85 ? C1 Q4S 401 A 1 HETATM 12 C C12 Q4S . . . B 2 8.372 3.262 98.079 1 17.72 ? C12 Q4S 401 A 1 HETATM 13 C C11 Q4S . . . B 2 7.356 2.834 95.827 1 18.39 ? C11 Q4S 401 A 1 HETATM 14 O O1 Q4S . . . B 2 6.437 3.886 96.244 1 17.52 ? O1 Q4S 401 A 1 HETATM 15 C C10 Q4S . . . B 2 5.594 3.443 97.205 1 17.34 ? C10 Q4S 401 A 1 HETATM 16 C C5 Q4S . . . B 2 4.263 3.74 96.918 1 17.78 ? C5 Q4S 401 A 1 HETATM 17 C C6 Q4S . . . B 2 3.257 3.354 97.802 1 18.21 ? C6 Q4S 401 A 1 HETATM 18 C C7 Q4S . . . B 2 3.597 2.67 98.967 1 18.67 ? C7 Q4S 401 A 1 HETATM 19 C C8 Q4S . . . B 2 4.932 2.365 99.233 1 18.27 ? C8 Q4S 401 A 1 HETATM 20 C C9 Q4S . . . B 2 5.96 2.748 98.362 1 17.85 ? C9 Q4S 401 A 1 HETATM 21 N N1 Q4S . . . B 2 7.242 2.502 98.651 1 17.82 ? N1 Q4S 401 A 1 HETATM 22 C C19 Q4S . . . B 2 7.703 1.68 99.801 1 18.9 ? C19 Q4S 401 A 1 HETATM 23 C C20 Q4S . . . B 2 7.567 2.456 101.126 1 20.36 ? C20 Q4S 401 A 1 HETATM 24 C C31 Q4S . . . B 2 8.774 3.395 101.376 1 20.59 ? C31 Q4S 401 A 1 HETATM 25 C C30 Q4S . . . B 2 8.906 2.774 102.781 1 22.05 ? C30 Q4S 401 A 1 HETATM 26 C C21 Q4S . . . B 2 8.053 1.593 102.303 1 22.15 ? C21 Q4S 401 A 1 HETATM 27 C C22 Q4S . . . B 2 6.957 1.185 103.311 1 25.74 ? C22 Q4S 401 A 1 HETATM 28 O O4 Q4S . . . B 2 7.681 0.426 104.307 1 27.18 ? O4 Q4S 401 A 1 HETATM 29 C C34 Q4S . . . B 2 6.899 -0.658 104.861 1 29.55 ? C34 Q4S 401 A 1 HETATM 30 C C29 Q4S . . . B 2 6.22 2.165 103.991 1 26.61 ? C29 Q4S 401 A 1 HETATM 31 C C28 Q4S . . . B 2 4.839 2.022 104.134 1 27.05 ? C28 Q4S 401 A 1 HETATM 32 C C27 Q4S . . . B 2 3.998 3.059 104.877 1 27.07 ? C27 Q4S 401 A 1 HETATM 33 C C26 Q4S . . . B 2 3.006 3.776 103.962 1 27.72 ? C26 Q4S 401 A 1 HETATM 34 N N2 Q4S . . . B 2 1.877 2.904 103.601 1 28.05 ? N2 Q4S 401 A 1 HETATM 35 C C32 Q4S . . . B 2 0.886 2.434 104.577 1 28.81 ? C32 Q4S 401 A 1 HETATM 36 C C25 Q4S . . . B 2 1.67 2.486 102.346 1 25.1 ? C25 Q4S 401 A 1 HETATM 37 O O3 Q4S . . . B 2 0.73 1.754 102.025 1 23.68 ? O3 Q4S 401 A 1 HETATM 38 C C24 Q4S . . . B 2 2.698 2.95 101.292 1 23.5 ? C24 Q4S 401 A 1 HETATM 39 C C23 Q4S . . . B 2 2.518 2.205 99.958 1 21.71 ? C23 Q4S 401 A 1 HETATM 40 O O2 Q4S . . . B 2 1.185 2.423 99.474 1 21.42 ? O2 Q4S 401 A 1 HETATM 41 C C33 Q4S . . . B 2 2.683 0.678 100.069 1 24.99 ? C33 Q4S 401 A 1 HETATM 42 O O5 Q4S . . . B 2 2.086 -0.054 99.275 1 23.43 ? O5 Q4S 401 A 1 HETATM 43 N N3 Q4S . . . B 2 3.51 0.24 101.02 1 26.97 ? N3 Q4S 401 A 1 HETATM 44 S S1 Q4S . . . B 2 3.831 -1.341 101.218 1 34.34 ? S1 Q4S 401 A 1 HETATM 45 O O6 Q4S . . . B 2 3.722 -2.09 99.924 1 36.2 ? O6 Q4S 401 A 1 HETATM 46 O O7 Q4S . . . B 2 5.229 -1.445 101.715 1 40.29 ? O7 Q4S 401 A 1 HETATM 47 N N4 Q4S . . . B 2 2.835 -2.015 102.326 1 38.84 ? N4 Q4S 401 A 1 HETATM 48 C C36 Q4S . . . B 2 2.902 -1.239 103.576 1 39.44 ? C36 Q4S 401 A 1 HETATM 49 C C35 Q4S . . . B 2 1.453 -2.068 101.825 1 38.47 ? C35 Q4S 401 A 1 # _model_server_stats.io_time_ms 52 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 49 #