data_6UDO
#
_model_server_result.job_id            4atC54ZjKIWibZwDYxQECQ 
_model_server_result.datetime_utc      '2025-07-31 02:16:57' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6udo 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":604}' 
#
_entry.id    6UDO 
#
_exptl.entry_id    6UDO 
_exptl.method      'ELECTRON MICROSCOPY' 
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_entity.details                     ? 
_entity.formula_weight              507.181 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-TRIPHOSPHATE" 
_entity.pdbx_number_of_molecules    8 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6UDO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UDO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 T N N 
? 4 X N N 
? 4 BA N N 
? 4 FA N N 
? 4 JA N N 
? 4 NA N N 
? 4 RA N N 
? 4 VA N N 
#
_chem_comp.formula           'C10 H16 N5 O13 P3' 
_chem_comp.formula_weight    507.181 
_chem_comp.id                ATP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "ADENOSINE-5'-TRIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ATP doub 70 n n 
PG O2G ATP sing 71 n n 
PG O3G ATP sing 72 n n 
PG O3B ATP sing 73 n n 
O2G HOG2 ATP sing 74 n n 
O3G HOG3 ATP sing 75 n n 
PB O1B ATP doub 76 n n 
PB O2B ATP sing 77 n n 
PB O3B ATP sing 78 n n 
PB O3A ATP sing 79 n n 
O2B HOB2 ATP sing 80 n n 
PA O1A ATP doub 81 n n 
PA O2A ATP sing 82 n n 
PA O3A ATP sing 83 n n 
PA O5' ATP sing 84 n n 
O2A HOA2 ATP sing 85 n n 
O5' C5' ATP sing 86 n n 
C5' C4' ATP sing 87 n n 
C5' "H5'1" ATP sing 88 n n 
C5' "H5'2" ATP sing 89 n n 
C4' O4' ATP sing 90 n n 
C4' C3' ATP sing 91 n n 
C4' H4' ATP sing 92 n n 
O4' C1' ATP sing 93 n n 
C3' O3' ATP sing 94 n n 
C3' C2' ATP sing 95 n n 
C3' H3' ATP sing 96 n n 
O3' HO3' ATP sing 97 n n 
C2' O2' ATP sing 98 n n 
C2' C1' ATP sing 99 n n 
C2' H2' ATP sing 100 n n 
O2' HO2' ATP sing 101 n n 
C1' N9 ATP sing 102 n n 
C1' H1' ATP sing 103 n n 
N9 C8 ATP sing 104 n y 
N9 C4 ATP sing 105 n y 
C8 N7 ATP doub 106 n y 
C8 H8 ATP sing 107 n n 
N7 C5 ATP sing 108 n y 
C5 C6 ATP sing 109 n y 
C5 C4 ATP doub 110 n y 
C6 N6 ATP sing 111 n n 
C6 N1 ATP doub 112 n y 
N6 HN61 ATP sing 113 n n 
N6 HN62 ATP sing 114 n n 
N1 C2 ATP sing 115 n y 
C2 N3 ATP doub 116 n y 
C2 H2 ATP sing 117 n n 
N3 C4 ATP sing 118 n y 
#
_atom_sites.entry_id                     6UDO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 2 IMP A 1 601 515 IMP IMP . 
R 3 GTP A 1 602 518 GTP GTP . 
S 3 GTP A 1 603 519 GTP GTP . 
T 4 ATP A 1 604 520 ATP ATP . 
U 2 IMP B 1 601 515 IMP IMP . 
V 3 GTP B 1 602 518 GTP GTP . 
W 3 GTP B 1 603 519 GTP GTP . 
X 4 ATP B 1 604 520 ATP ATP . 
Y 2 IMP C 1 601 515 IMP IMP . 
Z 3 GTP C 1 602 518 GTP GTP . 
AA 3 GTP C 1 603 519 GTP GTP . 
BA 4 ATP C 1 604 520 ATP ATP . 
CA 2 IMP D 1 601 515 IMP IMP . 
DA 3 GTP D 1 602 518 GTP GTP . 
EA 3 GTP D 1 603 519 GTP GTP . 
FA 4 ATP D 1 604 520 ATP ATP . 
GA 2 IMP E 1 601 515 IMP IMP . 
HA 3 GTP E 1 602 518 GTP GTP . 
IA 3 GTP E 1 603 519 GTP GTP . 
JA 4 ATP E 1 604 520 ATP ATP . 
KA 2 IMP F 1 601 515 IMP IMP . 
LA 3 GTP F 1 602 518 GTP GTP . 
MA 3 GTP F 1 603 519 GTP GTP . 
NA 4 ATP F 1 604 520 ATP ATP . 
OA 2 IMP G 1 601 515 IMP IMP . 
PA 3 GTP G 1 602 518 GTP GTP . 
QA 3 GTP G 1 603 519 GTP GTP . 
RA 4 ATP G 1 604 520 ATP ATP . 
SA 2 IMP H 1 601 515 IMP IMP . 
TA 3 GTP H 1 602 518 GTP GTP . 
UA 3 GTP H 1 603 519 GTP GTP . 
VA 4 ATP H 1 604 520 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ATP . . . JA 4 126.855 123.906 167.016 1 124.78 ? PG ATP 604 E 1 
HETATM 2 O O1G ATP . . . JA 4 127.876 124.368 166.002 1 124.78 ? O1G ATP 604 E 1 
HETATM 3 O O2G ATP . . . JA 4 125.932 124.996 167.505 1 124.78 ? O2G ATP 604 E 1 
HETATM 4 O O3G ATP . . . JA 4 127.415 123.016 168.098 1 124.78 ? O3G ATP 604 E 1 
HETATM 5 P PB ATP . . . JA 4 126.398 121.467 165.752 1 124.78 ? PB ATP 604 E 1 
HETATM 6 O O1B ATP . . . JA 4 127.692 121.664 165.01 1 124.78 ? O1B ATP 604 E 1 
HETATM 7 O O2B ATP . . . JA 4 126.343 120.555 166.95 1 124.78 ? O2B ATP 604 E 1 
HETATM 8 O O3B ATP . . . JA 4 125.881 122.92 166.201 1 124.78 ? O3B ATP 604 E 1 
HETATM 9 P PA ATP . . . JA 4 125.44 119.662 163.833 1 124.78 ? PA ATP 604 E 1 
HETATM 10 O O1A ATP . . . JA 4 125.095 120.03 162.42 1 124.78 ? O1A ATP 604 E 1 
HETATM 11 O O2A ATP . . . JA 4 126.791 119.068 164.127 1 124.78 ? O2A ATP 604 E 1 
HETATM 12 O O3A ATP . . . JA 4 125.271 121.005 164.702 1 124.78 ? O3A ATP 604 E 1 
HETATM 13 O O5' ATP . . . JA 4 124.295 118.664 164.361 1 124.78 ? O5' ATP 604 E 1 
HETATM 14 C C5' ATP . . . JA 4 123.855 118.708 165.713 1 124.78 ? C5' ATP 604 E 1 
HETATM 15 C C4' ATP . . . JA 4 123.071 117.451 166.067 1 124.78 ? C4' ATP 604 E 1 
HETATM 16 O O4' ATP . . . JA 4 122.523 116.878 164.885 1 124.78 ? O4' ATP 604 E 1 
HETATM 17 C C3' ATP . . . JA 4 123.953 116.397 166.714 1 124.78 ? C3' ATP 604 E 1 
HETATM 18 O O3' ATP . . . JA 4 123.423 116.061 167.995 1 124.78 ? O3' ATP 604 E 1 
HETATM 19 C C2' ATP . . . JA 4 123.872 115.175 165.834 1 124.78 ? C2' ATP 604 E 1 
HETATM 20 O O2' ATP . . . JA 4 123.572 114.037 166.642 1 124.78 ? O2' ATP 604 E 1 
HETATM 21 C C1' ATP . . . JA 4 122.739 115.469 164.868 1 124.78 ? C1' ATP 604 E 1 
HETATM 22 N N9 ATP . . . JA 4 123.105 115.061 163.495 1 124.78 ? N9 ATP 604 E 1 
HETATM 23 C C8 ATP . . . JA 4 124.24 115.382 162.853 1 124.78 ? C8 ATP 604 E 1 
HETATM 24 N N7 ATP . . . JA 4 124.262 114.847 161.608 1 124.78 ? N7 ATP 604 E 1 
HETATM 25 C C5 ATP . . . JA 4 123.117 114.168 161.443 1 124.78 ? C5 ATP 604 E 1 
HETATM 26 C C6 ATP . . . JA 4 122.5 113.37 160.368 1 124.78 ? C6 ATP 604 E 1 
HETATM 27 N N6 ATP . . . JA 4 123.129 113.187 159.186 1 124.78 ? N6 ATP 604 E 1 
HETATM 28 N N1 ATP . . . JA 4 121.288 112.831 160.603 1 124.78 ? N1 ATP 604 E 1 
HETATM 29 C C2 ATP . . . JA 4 120.654 113.002 161.773 1 124.78 ? C2 ATP 604 E 1 
HETATM 30 N N3 ATP . . . JA 4 121.152 113.716 162.793 1 124.78 ? N3 ATP 604 E 1 
HETATM 31 C C4 ATP . . . JA 4 122.36 114.309 162.69 1 124.78 ? C4 ATP 604 E 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    53 
_model_server_stats.query_time_ms           345 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           31 
#