data_6UDQ # _model_server_result.job_id NsCdd0BiMCNoOInogstFVA _model_server_result.datetime_utc '2024-10-20 20:39:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6udq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":601}' # _entry.id 6UDQ # _exptl.entry_id 6UDQ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 348.206 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSINIC ACID' _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UDQ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UDQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 M N N ? 2 R N N ? 2 U N N ? 2 Y N N ? 2 CA N N ? 2 HA N N ? 2 KA N N ? 2 OA N N # _chem_comp.formula 'C10 H13 N4 O8 P' _chem_comp.formula_weight 348.206 _chem_comp.id IMP _chem_comp.mon_nstd_flag n _chem_comp.name 'INOSINIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag P O1P IMP doub 270 n n P O2P IMP sing 271 n n P O3P IMP sing 272 n n P O5' IMP sing 273 n n O2P HOP2 IMP sing 274 n n O3P HOP3 IMP sing 275 n n O5' C5' IMP sing 276 n n C5' C4' IMP sing 277 n n C5' "H5'1" IMP sing 278 n n C5' "H5'2" IMP sing 279 n n C4' O4' IMP sing 280 n n C4' C3' IMP sing 281 n n C4' H4' IMP sing 282 n n O4' C1' IMP sing 283 n n C3' O3' IMP sing 284 n n C3' C2' IMP sing 285 n n C3' H3' IMP sing 286 n n O3' HO3' IMP sing 287 n n C2' O2' IMP sing 288 n n C2' C1' IMP sing 289 n n C2' H2' IMP sing 290 n n O2' HO2' IMP sing 291 n n C1' N9 IMP sing 292 n n C1' H1' IMP sing 293 n n N9 C8 IMP sing 294 n y N9 C4 IMP sing 295 n y C8 N7 IMP doub 296 n y C8 H8 IMP sing 297 n n N7 C5 IMP sing 298 n y C5 C6 IMP sing 299 n n C5 C4 IMP doub 300 n y C6 O6 IMP doub 301 n n C6 N1 IMP sing 302 n n N1 C2 IMP sing 303 n n N1 HN1 IMP sing 304 n n C2 N3 IMP doub 305 n n C2 H2 IMP sing 306 n n N3 C4 IMP sing 307 n n # _atom_sites.entry_id 6UDQ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code M 2 IMP A 1 601 515 IMP IMP . N 3 GTP A 1 602 518 GTP GTP . O 3 GTP A 1 603 519 GTP GTP . P 4 ATP A 1 604 520 ATP ATP . Q 4 ATP A 1 605 903 ATP ATP . R 2 IMP E 1 601 515 IMP IMP . S 3 GTP E 1 602 518 GTP GTP . T 3 GTP E 1 603 519 GTP GTP . U 2 IMP B 1 601 515 IMP IMP . V 3 GTP B 1 602 518 GTP GTP . W 3 GTP B 1 603 519 GTP GTP . X 4 ATP B 1 604 520 ATP ATP . Y 2 IMP F 1 601 515 IMP IMP . Z 3 GTP F 1 602 518 GTP GTP . AA 3 GTP F 1 603 519 GTP GTP . BA 4 ATP F 1 604 903 ATP ATP . CA 2 IMP C 1 601 515 IMP IMP . DA 3 GTP C 1 602 518 GTP GTP . EA 3 GTP C 1 603 519 GTP GTP . FA 4 ATP C 1 604 520 ATP ATP . GA 4 ATP C 1 605 903 ATP ATP . HA 2 IMP G 1 601 515 IMP IMP . IA 3 GTP G 1 602 518 GTP GTP . JA 3 GTP G 1 603 519 GTP GTP . KA 2 IMP D 1 601 515 IMP IMP . LA 3 GTP D 1 602 518 GTP GTP . MA 3 GTP D 1 603 519 GTP GTP . NA 4 ATP D 1 604 520 ATP ATP . OA 2 IMP H 1 601 515 IMP IMP . PA 3 GTP H 1 602 518 GTP GTP . QA 3 GTP H 1 603 519 GTP GTP . RA 4 ATP H 1 604 903 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P IMP . . . R 2 157.355 186.248 182.232 1 68.38 ? P IMP 601 E 1 HETATM 2 O O1P IMP . . . R 2 157.723 186.724 180.851 1 68.38 ? O1P IMP 601 E 1 HETATM 3 O O2P IMP . . . R 2 155.87 186.003 182.272 1 68.38 ? O2P IMP 601 E 1 HETATM 4 O O3P IMP . . . R 2 158.27 185.111 182.596 1 68.38 ? O3P IMP 601 E 1 HETATM 5 O O5' IMP . . . R 2 157.65 187.432 183.252 1 68.38 ? O5' IMP 601 E 1 HETATM 6 C C5' IMP . . . R 2 158.099 188.696 182.792 1 68.38 ? C5' IMP 601 E 1 HETATM 7 C C4' IMP . . . R 2 158.929 189.398 183.834 1 68.38 ? C4' IMP 601 E 1 HETATM 8 O O4' IMP . . . R 2 160.328 189.258 183.517 1 68.38 ? O4' IMP 601 E 1 HETATM 9 C C3' IMP . . . R 2 158.735 190.898 183.939 1 68.38 ? C3' IMP 601 E 1 HETATM 10 O O3' IMP . . . R 2 157.585 191.248 184.684 1 68.38 ? O3' IMP 601 E 1 HETATM 11 C C2' IMP . . . R 2 160.038 191.368 184.583 1 68.38 ? C2' IMP 601 E 1 HETATM 12 O O2' IMP . . . R 2 159.961 191.255 185.994 1 68.38 ? O2' IMP 601 E 1 HETATM 13 C C1' IMP . . . R 2 161.048 190.333 184.073 1 68.38 ? C1' IMP 601 E 1 HETATM 14 N N9 IMP . . . R 2 161.947 190.878 183.038 1 68.38 ? N9 IMP 601 E 1 HETATM 15 C C8 IMP . . . R 2 161.55 191.595 181.978 1 68.38 ? C8 IMP 601 E 1 HETATM 16 N N7 IMP . . . R 2 162.643 191.907 181.263 1 68.38 ? N7 IMP 601 E 1 HETATM 17 C C5 IMP . . . R 2 163.695 191.384 181.875 1 68.38 ? C5 IMP 601 E 1 HETATM 18 C C6 IMP . . . R 2 165.182 191.405 181.529 1 68.38 ? C6 IMP 601 E 1 HETATM 19 O O6 IMP . . . R 2 165.549 191.97 180.559 1 68.38 ? O6 IMP 601 E 1 HETATM 20 N N1 IMP . . . R 2 166.123 190.751 182.376 1 68.38 ? N1 IMP 601 E 1 HETATM 21 C C2 IMP . . . R 2 165.658 190.073 183.552 1 68.38 ? C2 IMP 601 E 1 HETATM 22 N N3 IMP . . . R 2 164.236 190.049 183.875 1 68.38 ? N3 IMP 601 E 1 HETATM 23 C C4 IMP . . . R 2 163.262 190.735 182.987 1 68.38 ? C4 IMP 601 E 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 40 _model_server_stats.query_time_ms 279 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 23 #