data_6UDT # _model_server_result.job_id 8x9L1bdk1vTTZwSsQngZfw _model_server_result.datetime_utc '2024-11-24 01:16:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6udt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6UDT # _exptl.entry_id 6UDT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 595.126 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4S,7aR,9aR,10S,11E,18R)-6'-chloro-10,18-dihydroxy-15-methyl-16-oxo-3',4',7,7a,8,9,9a,10,13,14,15,16,17,18-tetradecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)cyclobuta[n][1,4]oxazepino[4,3-a][1,8]diazacyclohexadecine-4,1'-naphthalene]-18-carboxylic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UDT _cell.length_a 43.719 _cell.length_b 89.554 _cell.length_c 84.641 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UDT _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_557 -x,y,-z+5/2 -1 0 0 0 1 0 0 0 -1 0 0 211.6025 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C33 H39 Cl N2 O6' _chem_comp.formula_weight 595.126 _chem_comp.id Q4V _chem_comp.mon_nstd_flag . _chem_comp.name "(4S,7aR,9aR,10S,11E,18R)-6'-chloro-10,18-dihydroxy-15-methyl-16-oxo-3',4',7,7a,8,9,9a,10,13,14,15,16,17,18-tetradecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)cyclobuta[n][1,4]oxazepino[4,3-a][1,8]diazacyclohexadecine-4,1'-naphthalene]-18-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C17 Q4V sing 277 n n C17 C16 Q4V doub 278 n y C17 C18 Q4V sing 279 n y C16 C15 Q4V sing 280 n y C18 C13 Q4V doub 281 n y C15 C14 Q4V doub 282 n y C13 C14 Q4V sing 283 n y C13 C2 Q4V sing 284 n n C11 O1 Q4V sing 285 n n C11 C1 Q4V sing 286 n n C14 C1 Q4V sing 287 n n C2 C3 Q4V sing 288 n n O1 C10 Q4V sing 289 n n C1 C4 Q4V sing 290 n n C1 C12 Q4V sing 291 n n C4 C3 Q4V sing 292 n n C5 C10 Q4V doub 293 n y C5 C6 Q4V sing 294 n y C10 C9 Q4V sing 295 n y C6 C7 Q4V doub 296 n y C12 N1 Q4V sing 297 n n C9 N1 Q4V sing 298 n n C9 C8 Q4V doub 299 n y N1 C19 Q4V sing 300 n n C7 C8 Q4V sing 301 n y C7 C23 Q4V sing 302 n n O5 C33 Q4V doub 303 n n O2 C23 Q4V sing 304 n n C19 C20 Q4V sing 305 n n C23 C33 Q4V sing 306 n n C23 C24 Q4V sing 307 n n C33 O6 Q4V sing 308 n n C20 C31 Q4V sing 309 n n C20 C21 Q4V sing 310 n n C24 C25 Q4V sing 311 n n C31 C30 Q4V sing 312 n n O3 C25 Q4V doub 313 n n C21 C30 Q4V sing 314 n n C21 C22 Q4V sing 315 n n C25 N2 Q4V sing 316 n n C22 C29 Q4V sing 317 n n C22 O4 Q4V sing 318 n n N2 C26 Q4V sing 319 n n N2 C32 Q4V sing 320 n n C26 C27 Q4V sing 321 n n C29 C28 Q4V doub 322 e n C28 C27 Q4V sing 323 n n C4 H1 Q4V sing 324 n n C4 H2 Q4V sing 325 n n C3 H3 Q4V sing 326 n n C3 H4 Q4V sing 327 n n C2 H5 Q4V sing 328 n n C2 H6 Q4V sing 329 n n C18 H7 Q4V sing 330 n n C16 H8 Q4V sing 331 n n C15 H9 Q4V sing 332 n n C12 H10 Q4V sing 333 n n C12 H11 Q4V sing 334 n n C11 H12 Q4V sing 335 n n C11 H13 Q4V sing 336 n n C5 H14 Q4V sing 337 n n C6 H15 Q4V sing 338 n n C8 H16 Q4V sing 339 n n C19 H17 Q4V sing 340 n n C19 H18 Q4V sing 341 n n C20 H19 Q4V sing 342 n n C31 H20 Q4V sing 343 n n C31 H21 Q4V sing 344 n n C30 H22 Q4V sing 345 n n C30 H23 Q4V sing 346 n n C21 H24 Q4V sing 347 n n C22 H25 Q4V sing 348 n n O4 H26 Q4V sing 349 n n C29 H27 Q4V sing 350 n n C28 H28 Q4V sing 351 n n C27 H29 Q4V sing 352 n n C27 H30 Q4V sing 353 n n C26 H31 Q4V sing 354 n n C26 H32 Q4V sing 355 n n C32 H33 Q4V sing 356 n n C32 H34 Q4V sing 357 n n C32 H35 Q4V sing 358 n n C24 H36 Q4V sing 359 n n C24 H37 Q4V sing 360 n n O6 H38 Q4V sing 361 n n O2 H39 Q4V sing 362 n n # _atom_sites.entry_id 6UDT _atom_sites.fract_transf_matrix[1][1] 0.022873 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011166 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011815 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q4V A 1 401 1 Q4V UNL . C 3 HOH A 1 501 33 HOH HOH . C 3 HOH A 2 502 111 HOH HOH . C 3 HOH A 3 503 145 HOH HOH . C 3 HOH A 4 504 76 HOH HOH . C 3 HOH A 5 505 121 HOH HOH . C 3 HOH A 6 506 73 HOH HOH . C 3 HOH A 7 507 79 HOH HOH . C 3 HOH A 8 508 124 HOH HOH . C 3 HOH A 9 509 26 HOH HOH . C 3 HOH A 10 510 143 HOH HOH . C 3 HOH A 11 511 100 HOH HOH . C 3 HOH A 12 512 22 HOH HOH . C 3 HOH A 13 513 48 HOH HOH . C 3 HOH A 14 514 27 HOH HOH . C 3 HOH A 15 515 98 HOH HOH . C 3 HOH A 16 516 78 HOH HOH . C 3 HOH A 17 517 46 HOH HOH . C 3 HOH A 18 518 89 HOH HOH . C 3 HOH A 19 519 42 HOH HOH . C 3 HOH A 20 520 75 HOH HOH . C 3 HOH A 21 521 82 HOH HOH . C 3 HOH A 22 522 13 HOH HOH . C 3 HOH A 23 523 64 HOH HOH . C 3 HOH A 24 524 45 HOH HOH . C 3 HOH A 25 525 129 HOH HOH . C 3 HOH A 26 526 6 HOH HOH . C 3 HOH A 27 527 32 HOH HOH . C 3 HOH A 28 528 40 HOH HOH . C 3 HOH A 29 529 85 HOH HOH . C 3 HOH A 30 530 99 HOH HOH . C 3 HOH A 31 531 3 HOH HOH . C 3 HOH A 32 532 54 HOH HOH . C 3 HOH A 33 533 83 HOH HOH . C 3 HOH A 34 534 80 HOH HOH . C 3 HOH A 35 535 53 HOH HOH . C 3 HOH A 36 536 102 HOH HOH . C 3 HOH A 37 537 62 HOH HOH . C 3 HOH A 38 538 104 HOH HOH . C 3 HOH A 39 539 68 HOH HOH . C 3 HOH A 40 540 16 HOH HOH . C 3 HOH A 41 541 61 HOH HOH . C 3 HOH A 42 542 31 HOH HOH . C 3 HOH A 43 543 2 HOH HOH . C 3 HOH A 44 544 35 HOH HOH . C 3 HOH A 45 545 150 HOH HOH . C 3 HOH A 46 546 92 HOH HOH . C 3 HOH A 47 547 41 HOH HOH . C 3 HOH A 48 548 52 HOH HOH . C 3 HOH A 49 549 39 HOH HOH . C 3 HOH A 50 550 131 HOH HOH . C 3 HOH A 51 551 57 HOH HOH . C 3 HOH A 52 552 29 HOH HOH . C 3 HOH A 53 553 25 HOH HOH . C 3 HOH A 54 554 36 HOH HOH . C 3 HOH A 55 555 56 HOH HOH . C 3 HOH A 56 556 125 HOH HOH . C 3 HOH A 57 557 127 HOH HOH . C 3 HOH A 58 558 19 HOH HOH . C 3 HOH A 59 559 95 HOH HOH . C 3 HOH A 60 560 55 HOH HOH . C 3 HOH A 61 561 86 HOH HOH . C 3 HOH A 62 562 23 HOH HOH . C 3 HOH A 63 563 28 HOH HOH . C 3 HOH A 64 564 10 HOH HOH . C 3 HOH A 65 565 50 HOH HOH . C 3 HOH A 66 566 17 HOH HOH . C 3 HOH A 67 567 18 HOH HOH . C 3 HOH A 68 568 142 HOH HOH . C 3 HOH A 69 569 133 HOH HOH . C 3 HOH A 70 570 84 HOH HOH . C 3 HOH A 71 571 47 HOH HOH . C 3 HOH A 72 572 51 HOH HOH . C 3 HOH A 73 573 67 HOH HOH . C 3 HOH A 74 574 103 HOH HOH . C 3 HOH A 75 575 1 HOH HOH . C 3 HOH A 76 576 141 HOH HOH . C 3 HOH A 77 577 140 HOH HOH . C 3 HOH A 78 578 94 HOH HOH . C 3 HOH A 79 579 4 HOH HOH . C 3 HOH A 80 580 7 HOH HOH . C 3 HOH A 81 581 70 HOH HOH . C 3 HOH A 82 582 5 HOH HOH . C 3 HOH A 83 583 93 HOH HOH . C 3 HOH A 84 584 72 HOH HOH . C 3 HOH A 85 585 115 HOH HOH . C 3 HOH A 86 586 101 HOH HOH . C 3 HOH A 87 587 128 HOH HOH . C 3 HOH A 88 588 65 HOH HOH . C 3 HOH A 89 589 91 HOH HOH . C 3 HOH A 90 590 135 HOH HOH . C 3 HOH A 91 591 9 HOH HOH . C 3 HOH A 92 592 15 HOH HOH . C 3 HOH A 93 593 81 HOH HOH . C 3 HOH A 94 594 12 HOH HOH . C 3 HOH A 95 595 24 HOH HOH . C 3 HOH A 96 596 96 HOH HOH . C 3 HOH A 97 597 109 HOH HOH . C 3 HOH A 98 598 49 HOH HOH . C 3 HOH A 99 599 8 HOH HOH . C 3 HOH A 100 600 44 HOH HOH . C 3 HOH A 101 601 132 HOH HOH . C 3 HOH A 102 602 63 HOH HOH . C 3 HOH A 103 603 14 HOH HOH . C 3 HOH A 104 604 21 HOH HOH . C 3 HOH A 105 605 11 HOH HOH . C 3 HOH A 106 606 114 HOH HOH . C 3 HOH A 107 607 138 HOH HOH . C 3 HOH A 108 608 136 HOH HOH . C 3 HOH A 109 609 38 HOH HOH . C 3 HOH A 110 610 66 HOH HOH . C 3 HOH A 111 611 110 HOH HOH . C 3 HOH A 112 612 71 HOH HOH . C 3 HOH A 113 613 105 HOH HOH . C 3 HOH A 114 614 20 HOH HOH . C 3 HOH A 115 615 97 HOH HOH . C 3 HOH A 116 616 90 HOH HOH . C 3 HOH A 117 617 112 HOH HOH . C 3 HOH A 118 618 119 HOH HOH . C 3 HOH A 119 619 152 HOH HOH . C 3 HOH A 120 620 134 HOH HOH . C 3 HOH A 121 621 30 HOH HOH . C 3 HOH A 122 622 69 HOH HOH . C 3 HOH A 123 623 106 HOH HOH . C 3 HOH A 124 624 148 HOH HOH . C 3 HOH A 125 625 120 HOH HOH . C 3 HOH A 126 626 122 HOH HOH . C 3 HOH A 127 627 117 HOH HOH . C 3 HOH A 128 628 146 HOH HOH . C 3 HOH A 129 629 144 HOH HOH . C 3 HOH A 130 630 118 HOH HOH . C 3 HOH A 131 631 74 HOH HOH . C 3 HOH A 132 632 108 HOH HOH . C 3 HOH A 133 633 151 HOH HOH . C 3 HOH A 134 634 130 HOH HOH . C 3 HOH A 135 635 116 HOH HOH . C 3 HOH A 136 636 113 HOH HOH . C 3 HOH A 137 637 126 HOH HOH . C 3 HOH A 138 638 88 HOH HOH . C 3 HOH A 139 639 107 HOH HOH . C 3 HOH A 140 640 139 HOH HOH . C 3 HOH A 141 641 60 HOH HOH . C 3 HOH A 142 642 147 HOH HOH . C 3 HOH A 143 643 87 HOH HOH . C 3 HOH A 144 644 58 HOH HOH . C 3 HOH A 145 645 37 HOH HOH . C 3 HOH A 146 646 77 HOH HOH . C 3 HOH A 147 647 137 HOH HOH . C 3 HOH A 148 648 123 HOH HOH . C 3 HOH A 149 649 43 HOH HOH . C 3 HOH A 150 650 149 HOH HOH . C 3 HOH A 151 651 34 HOH HOH . C 3 HOH A 152 652 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 Q4V . . . B 2 9.398 1.486 96.607 1 9.73 ? C4 Q4V 401 A 1 HETATM 2 C C3 Q4V . . . B 2 10.862 1.488 97.029 1 10.23 ? C3 Q4V 401 A 1 HETATM 3 C C2 Q4V . . . B 2 11.686 2.244 96.007 1 10.5 ? C2 Q4V 401 A 1 HETATM 4 C C13 Q4V . . . B 2 11.101 3.616 95.731 1 9.92 ? C13 Q4V 401 A 1 HETATM 5 C C18 Q4V . . . B 2 11.944 4.575 95.191 1 10.39 ? C18 Q4V 401 A 1 HETATM 6 C C17 Q4V . . . B 2 11.478 5.85 94.928 1 11.62 ? C17 Q4V 401 A 1 HETATM 7 CL CL1 Q4V . . . B 2 12.57 6.99 94.267 1 21.06 ? CL1 Q4V 401 A 1 HETATM 8 C C16 Q4V . . . B 2 10.167 6.187 95.179 1 10.55 ? C16 Q4V 401 A 1 HETATM 9 C C15 Q4V . . . B 2 9.326 5.238 95.724 1 9.87 ? C15 Q4V 401 A 1 HETATM 10 C C14 Q4V . . . B 2 9.772 3.954 95.996 1 9.62 ? C14 Q4V 401 A 1 HETATM 11 C C1 Q4V . . . B 2 8.798 2.909 96.591 1 9.46 ? C1 Q4V 401 A 1 HETATM 12 C C12 Q4V . . . B 2 8.423 3.287 98.019 1 9.85 ? C12 Q4V 401 A 1 HETATM 13 C C11 Q4V . . . B 2 7.496 2.873 95.778 1 9.4 ? C11 Q4V 401 A 1 HETATM 14 O O1 Q4V . . . B 2 6.563 3.922 96.196 1 9.12 ? O1 Q4V 401 A 1 HETATM 15 C C10 Q4V . . . B 2 5.686 3.491 97.158 1 9.69 ? C10 Q4V 401 A 1 HETATM 16 C C5 Q4V . . . B 2 4.353 3.819 96.915 1 9.34 ? C5 Q4V 401 A 1 HETATM 17 C C6 Q4V . . . B 2 3.349 3.415 97.797 1 10.88 ? C6 Q4V 401 A 1 HETATM 18 C C7 Q4V . . . B 2 3.694 2.697 98.934 1 11.74 ? C7 Q4V 401 A 1 HETATM 19 C C8 Q4V . . . B 2 5.031 2.378 99.166 1 11.19 ? C8 Q4V 401 A 1 HETATM 20 C C9 Q4V . . . B 2 6.039 2.766 98.287 1 9.61 ? C9 Q4V 401 A 1 HETATM 21 N N1 Q4V . . . B 2 7.312 2.501 98.559 1 9.52 ? N1 Q4V 401 A 1 HETATM 22 C C19 Q4V . . . B 2 7.714 1.652 99.715 1 10.55 ? C19 Q4V 401 A 1 HETATM 23 C C20 Q4V . . . B 2 7.655 2.419 101.068 1 11.56 ? C20 Q4V 401 A 1 HETATM 24 C C31 Q4V . . . B 2 8.889 3.299 101.36 1 12.66 ? C31 Q4V 401 A 1 HETATM 25 C C30 Q4V . . . B 2 8.899 2.711 102.781 1 12.63 ? C30 Q4V 401 A 1 HETATM 26 C C21 Q4V . . . B 2 8.124 1.515 102.227 1 12.72 ? C21 Q4V 401 A 1 HETATM 27 C C22 Q4V . . . B 2 7.009 0.992 103.137 1 14.95 ? C22 Q4V 401 A 1 HETATM 28 O O4 Q4V . . . B 2 7.64 0.104 104.093 1 17.3 ? O4 Q4V 401 A 1 HETATM 29 C C29 Q4V . . . B 2 6.273 2.08 103.92 1 15.9 ? C29 Q4V 401 A 1 HETATM 30 C C28 Q4V . . . B 2 4.894 1.979 104.053 1 16.03 ? C28 Q4V 401 A 1 HETATM 31 C C27 Q4V . . . B 2 4.093 3.025 104.825 1 17.3 ? C27 Q4V 401 A 1 HETATM 32 C C26 Q4V . . . B 2 3.11 3.739 103.915 1 18.31 ? C26 Q4V 401 A 1 HETATM 33 N N2 Q4V . . . B 2 1.998 2.846 103.575 1 19.27 ? N2 Q4V 401 A 1 HETATM 34 C C32 Q4V . . . B 2 1.023 2.393 104.58 1 21.71 ? C32 Q4V 401 A 1 HETATM 35 C C25 Q4V . . . B 2 1.81 2.374 102.34 1 17.94 ? C25 Q4V 401 A 1 HETATM 36 O O3 Q4V . . . B 2 0.899 1.597 102.024 1 20.38 ? O3 Q4V 401 A 1 HETATM 37 C C24 Q4V . . . B 2 2.85 2.845 101.293 1 15.84 ? C24 Q4V 401 A 1 HETATM 38 C C23 Q4V . . . B 2 2.635 2.205 99.935 1 14.88 ? C23 Q4V 401 A 1 HETATM 39 C C33 Q4V . . . B 2 2.806 0.678 100.052 1 16.94 ? C33 Q4V 401 A 1 HETATM 40 O O6 Q4V . . . B 2 3.548 0.272 100.976 1 20.02 ? O6 Q4V 401 A 1 HETATM 41 O O5 Q4V . . . B 2 2.232 -0.056 99.217 1 19.85 ? O5 Q4V 401 A 1 HETATM 42 O O2 Q4V . . . B 2 1.327 2.512 99.474 1 16.5 ? O2 Q4V 401 A 1 # _model_server_stats.io_time_ms 53 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 1078 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 42 #