data_6UDU # _model_server_result.job_id ciaq9ZqUTqZs_CHUbg5MTw _model_server_result.datetime_utc '2024-10-20 13:06:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6udu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6UDU # _exptl.entry_id 6UDU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 539.062 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4S,11E,17R)-6'-chloro-17-hydroxy-14-methyl-15-oxo-3',4',8,9,10,13,14,15,16,17-decahydro-2'H,3H,5H,7H-spiro[1,18-(ethanediylidene)[1,4]oxazepino[4,3-a][1,8]diazacyclopentadecine-4,1'-naphthalene]-17-carboxylic acid" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UDU _cell.length_a 43.51 _cell.length_b 89.427 _cell.length_c 84.874 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UDU _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_557 -x,y,-z+5/2 -1 0 0 0 1 0 0 0 -1 0 0 212.185 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C30 H35 Cl N2 O5' _chem_comp.formula_weight 539.062 _chem_comp.id Q4Y _chem_comp.mon_nstd_flag . _chem_comp.name "(4S,11E,17R)-6'-chloro-17-hydroxy-14-methyl-15-oxo-3',4',8,9,10,13,14,15,16,17-decahydro-2'H,3H,5H,7H-spiro[1,18-(ethanediylidene)[1,4]oxazepino[4,3-a][1,8]diazacyclopentadecine-4,1'-naphthalene]-17-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C2 Q4Y sing 277 n n C2 C1 Q4Y doub 278 n y C2 C3 Q4Y sing 279 n y C1 C6 Q4Y sing 280 n y C3 C4 Q4Y doub 281 n y C6 C5 Q4Y doub 282 n y C4 C5 Q4Y sing 283 n y C4 C7 Q4Y sing 284 n n C11 O1 Q4Y sing 285 n n C11 C10 Q4Y sing 286 n n C5 C10 Q4Y sing 287 n n C7 C8 Q4Y sing 288 n n O1 C12 Q4Y sing 289 n n C10 C9 Q4Y sing 290 n n C10 C14 Q4Y sing 291 n n C9 C8 Q4Y sing 292 n n C15 C12 Q4Y doub 293 n y C15 C16 Q4Y sing 294 n y C12 C13 Q4Y sing 295 n y C16 C17 Q4Y doub 296 n y C14 N1 Q4Y sing 297 n n C13 N1 Q4Y sing 298 n n C13 C18 Q4Y doub 299 n y N1 C21 Q4Y sing 300 n n O4 C20 Q4Y doub 301 n n C17 C18 Q4Y sing 302 n y C17 C19 Q4Y sing 303 n n O2 C19 Q4Y sing 304 n n C20 C19 Q4Y sing 305 n n C20 O3 Q4Y sing 306 n n C21 C30 Q4Y sing 307 n n C19 C22 Q4Y sing 308 n n C30 C25 Q4Y sing 309 n n O5 C23 Q4Y doub 310 n n C22 C23 Q4Y sing 311 n n C23 N2 Q4Y sing 312 n n C25 C26 Q4Y sing 313 n n N2 C24 Q4Y sing 314 n n N2 C28 Q4Y sing 315 n n C26 C27 Q4Y sing 316 n n C27 C29 Q4Y doub 317 e n C29 C28 Q4Y sing 318 n n C9 H1 Q4Y sing 319 n n C9 H2 Q4Y sing 320 n n C8 H3 Q4Y sing 321 n n C8 H4 Q4Y sing 322 n n C7 H5 Q4Y sing 323 n n C7 H6 Q4Y sing 324 n n C3 H7 Q4Y sing 325 n n C1 H8 Q4Y sing 326 n n C6 H9 Q4Y sing 327 n n C14 H10 Q4Y sing 328 n n C14 H11 Q4Y sing 329 n n C11 H12 Q4Y sing 330 n n C11 H13 Q4Y sing 331 n n C15 H14 Q4Y sing 332 n n C16 H15 Q4Y sing 333 n n C18 H16 Q4Y sing 334 n n C21 H17 Q4Y sing 335 n n C21 H18 Q4Y sing 336 n n C30 H19 Q4Y sing 337 n n C30 H20 Q4Y sing 338 n n C25 H21 Q4Y sing 339 n n C25 H22 Q4Y sing 340 n n C26 H23 Q4Y sing 341 n n C26 H24 Q4Y sing 342 n n C27 H25 Q4Y sing 343 n n C29 H26 Q4Y sing 344 n n C28 H27 Q4Y sing 345 n n C28 H28 Q4Y sing 346 n n C24 H29 Q4Y sing 347 n n C24 H30 Q4Y sing 348 n n C24 H31 Q4Y sing 349 n n C22 H32 Q4Y sing 350 n n C22 H33 Q4Y sing 351 n n O3 H34 Q4Y sing 352 n n O2 H35 Q4Y sing 353 n n # _atom_sites.entry_id 6UDU _atom_sites.fract_transf_matrix[1][1] 0.022983 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011182 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011782 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q4Y A 1 401 1 Q4Y UNL . C 3 HOH A 1 501 53 HOH HOH . C 3 HOH A 2 502 54 HOH HOH . C 3 HOH A 3 503 50 HOH HOH . C 3 HOH A 4 504 30 HOH HOH . C 3 HOH A 5 505 75 HOH HOH . C 3 HOH A 6 506 52 HOH HOH . C 3 HOH A 7 507 17 HOH HOH . C 3 HOH A 8 508 33 HOH HOH . C 3 HOH A 9 509 7 HOH HOH . C 3 HOH A 10 510 69 HOH HOH . C 3 HOH A 11 511 1 HOH HOH . C 3 HOH A 12 512 92 HOH HOH . C 3 HOH A 13 513 9 HOH HOH . C 3 HOH A 14 514 60 HOH HOH . C 3 HOH A 15 515 101 HOH HOH . C 3 HOH A 16 516 35 HOH HOH . C 3 HOH A 17 517 55 HOH HOH . C 3 HOH A 18 518 29 HOH HOH . C 3 HOH A 19 519 86 HOH HOH . C 3 HOH A 20 520 83 HOH HOH . C 3 HOH A 21 521 4 HOH HOH . C 3 HOH A 22 522 74 HOH HOH . C 3 HOH A 23 523 66 HOH HOH . C 3 HOH A 24 524 56 HOH HOH . C 3 HOH A 25 525 38 HOH HOH . C 3 HOH A 26 526 82 HOH HOH . C 3 HOH A 27 527 5 HOH HOH . C 3 HOH A 28 528 80 HOH HOH . C 3 HOH A 29 529 59 HOH HOH . C 3 HOH A 30 530 98 HOH HOH . C 3 HOH A 31 531 36 HOH HOH . C 3 HOH A 32 532 58 HOH HOH . C 3 HOH A 33 533 68 HOH HOH . C 3 HOH A 34 534 40 HOH HOH . C 3 HOH A 35 535 61 HOH HOH . C 3 HOH A 36 536 13 HOH HOH . C 3 HOH A 37 537 16 HOH HOH . C 3 HOH A 38 538 14 HOH HOH . C 3 HOH A 39 539 57 HOH HOH . C 3 HOH A 40 540 62 HOH HOH . C 3 HOH A 41 541 77 HOH HOH . C 3 HOH A 42 542 100 HOH HOH . C 3 HOH A 43 543 79 HOH HOH . C 3 HOH A 44 544 26 HOH HOH . C 3 HOH A 45 545 3 HOH HOH . C 3 HOH A 46 546 25 HOH HOH . C 3 HOH A 47 547 24 HOH HOH . C 3 HOH A 48 548 88 HOH HOH . C 3 HOH A 49 549 39 HOH HOH . C 3 HOH A 50 550 23 HOH HOH . C 3 HOH A 51 551 49 HOH HOH . C 3 HOH A 52 552 12 HOH HOH . C 3 HOH A 53 553 22 HOH HOH . C 3 HOH A 54 554 37 HOH HOH . C 3 HOH A 55 555 19 HOH HOH . C 3 HOH A 56 556 44 HOH HOH . C 3 HOH A 57 557 65 HOH HOH . C 3 HOH A 58 558 34 HOH HOH . C 3 HOH A 59 559 11 HOH HOH . C 3 HOH A 60 560 87 HOH HOH . C 3 HOH A 61 561 41 HOH HOH . C 3 HOH A 62 562 71 HOH HOH . C 3 HOH A 63 563 6 HOH HOH . C 3 HOH A 64 564 43 HOH HOH . C 3 HOH A 65 565 20 HOH HOH . C 3 HOH A 66 566 67 HOH HOH . C 3 HOH A 67 567 99 HOH HOH . C 3 HOH A 68 568 91 HOH HOH . C 3 HOH A 69 569 10 HOH HOH . C 3 HOH A 70 570 28 HOH HOH . C 3 HOH A 71 571 2 HOH HOH . C 3 HOH A 72 572 18 HOH HOH . C 3 HOH A 73 573 8 HOH HOH . C 3 HOH A 74 574 15 HOH HOH . C 3 HOH A 75 575 63 HOH HOH . C 3 HOH A 76 576 21 HOH HOH . C 3 HOH A 77 577 45 HOH HOH . C 3 HOH A 78 578 95 HOH HOH . C 3 HOH A 79 579 32 HOH HOH . C 3 HOH A 80 580 64 HOH HOH . C 3 HOH A 81 581 76 HOH HOH . C 3 HOH A 82 582 84 HOH HOH . C 3 HOH A 83 583 90 HOH HOH . C 3 HOH A 84 584 46 HOH HOH . C 3 HOH A 85 585 48 HOH HOH . C 3 HOH A 86 586 97 HOH HOH . C 3 HOH A 87 587 47 HOH HOH . C 3 HOH A 88 588 42 HOH HOH . C 3 HOH A 89 589 70 HOH HOH . C 3 HOH A 90 590 94 HOH HOH . C 3 HOH A 91 591 85 HOH HOH . C 3 HOH A 92 592 51 HOH HOH . C 3 HOH A 93 593 89 HOH HOH . C 3 HOH A 94 594 96 HOH HOH . C 3 HOH A 95 595 73 HOH HOH . C 3 HOH A 96 596 72 HOH HOH . C 3 HOH A 97 597 27 HOH HOH . C 3 HOH A 98 598 93 HOH HOH . C 3 HOH A 99 599 81 HOH HOH . C 3 HOH A 100 600 78 HOH HOH . C 3 HOH A 101 601 31 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 Q4Y . . . B 2 9.353 1.546 96.829 1 24.9 ? C9 Q4Y 401 A 1 HETATM 2 C C8 Q4Y . . . B 2 10.829 1.578 97.273 1 25.03 ? C8 Q4Y 401 A 1 HETATM 3 C C7 Q4Y . . . B 2 11.677 2.351 96.278 1 24.27 ? C7 Q4Y 401 A 1 HETATM 4 C C4 Q4Y . . . B 2 11.034 3.688 95.965 1 23.01 ? C4 Q4Y 401 A 1 HETATM 5 C C3 Q4Y . . . B 2 11.872 4.643 95.406 1 24.57 ? C3 Q4Y 401 A 1 HETATM 6 C C2 Q4Y . . . B 2 11.402 5.898 95.066 1 26.98 ? C2 Q4Y 401 A 1 HETATM 7 CL CL1 Q4Y . . . B 2 12.494 7.046 94.389 1 38.56 ? CL1 Q4Y 401 A 1 HETATM 8 C C1 Q4Y . . . B 2 10.08 6.244 95.308 1 24.4 ? C1 Q4Y 401 A 1 HETATM 9 C C6 Q4Y . . . B 2 9.239 5.289 95.87 1 23 ? C6 Q4Y 401 A 1 HETATM 10 C C5 Q4Y . . . B 2 9.694 4.009 96.198 1 23.61 ? C5 Q4Y 401 A 1 HETATM 11 C C10 Q4Y . . . B 2 8.723 2.969 96.817 1 23.98 ? C10 Q4Y 401 A 1 HETATM 12 C C14 Q4Y . . . B 2 8.395 3.354 98.245 1 23.01 ? C14 Q4Y 401 A 1 HETATM 13 C C11 Q4Y . . . B 2 7.393 2.937 96.015 1 24.39 ? C11 Q4Y 401 A 1 HETATM 14 O O1 Q4Y . . . B 2 6.416 3.911 96.502 1 23.05 ? O1 Q4Y 401 A 1 HETATM 15 C C12 Q4Y . . . B 2 5.587 3.38 97.442 1 22.18 ? C12 Q4Y 401 A 1 HETATM 16 C C15 Q4Y . . . B 2 4.221 3.587 97.196 1 22.93 ? C15 Q4Y 401 A 1 HETATM 17 C C16 Q4Y . . . B 2 3.267 3.077 98.078 1 23.97 ? C16 Q4Y 401 A 1 HETATM 18 C C17 Q4Y . . . B 2 3.677 2.365 99.211 1 25.79 ? C17 Q4Y 401 A 1 HETATM 19 C C18 Q4Y . . . B 2 5.044 2.166 99.432 1 23.42 ? C18 Q4Y 401 A 1 HETATM 20 C C13 Q4Y . . . B 2 6.015 2.663 98.548 1 22.57 ? C13 Q4Y 401 A 1 HETATM 21 N N1 Q4Y . . . B 2 7.312 2.524 98.815 1 23.51 ? N1 Q4Y 401 A 1 HETATM 22 C C21 Q4Y . . . B 2 7.764 1.766 100.004 1 25.97 ? C21 Q4Y 401 A 1 HETATM 23 C C30 Q4Y . . . B 2 7.728 2.661 101.255 1 29.42 ? C30 Q4Y 401 A 1 HETATM 24 C C25 Q4Y . . . B 2 8.036 1.803 102.495 1 33.72 ? C25 Q4Y 401 A 1 HETATM 25 C C26 Q4Y . . . B 2 7.443 2.426 103.762 1 39.33 ? C26 Q4Y 401 A 1 HETATM 26 C C27 Q4Y . . . B 2 6.082 2.164 103.866 1 37.05 ? C27 Q4Y 401 A 1 HETATM 27 C C29 Q4Y . . . B 2 5.17 3.175 104.163 1 36.94 ? C29 Q4Y 401 A 1 HETATM 28 C C28 Q4Y . . . B 2 3.806 2.864 104.239 1 33.06 ? C28 Q4Y 401 A 1 HETATM 29 N N2 Q4Y . . . B 2 3.041 3.767 103.358 1 30.78 ? N2 Q4Y 401 A 1 HETATM 30 C C24 Q4Y . . . B 2 2.685 5.134 103.768 1 32.06 ? C24 Q4Y 401 A 1 HETATM 31 C C23 Q4Y . . . B 2 2.616 3.408 102.123 1 28.91 ? C23 Q4Y 401 A 1 HETATM 32 O O5 Q4Y . . . B 2 1.957 4.147 101.385 1 28.33 ? O5 Q4Y 401 A 1 HETATM 33 C C22 Q4Y . . . B 2 2.959 1.985 101.665 1 28.28 ? C22 Q4Y 401 A 1 HETATM 34 C C19 Q4Y . . . B 2 2.657 1.715 100.197 1 26.69 ? C19 Q4Y 401 A 1 HETATM 35 C C20 Q4Y . . . B 2 2.742 0.179 99.954 1 30.54 ? C20 Q4Y 401 A 1 HETATM 36 O O4 Q4Y . . . B 2 1.982 -0.299 99.086 1 32.59 ? O4 Q4Y 401 A 1 HETATM 37 O O3 Q4Y . . . B 2 3.595 -0.495 100.593 1 31.48 ? O3 Q4Y 401 A 1 HETATM 38 O O2 Q4Y . . . B 2 1.309 2.127 99.896 1 28.49 ? O2 Q4Y 401 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 38 #