data_6UDV # _model_server_result.job_id jMswTNtvKO5klpdX2xSkJQ _model_server_result.datetime_utc '2024-11-27 19:05:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6udv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6UDV # _exptl.entry_id 6UDV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 599.18 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "(4S,7aR,9aR,10S,11E,14S,15R)-6'-chloro-10-hydroxy-14,15-dimethyl-3',4',7a,8,9,9a,10,13,14,15-decahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)-16lambda~6~-cyclobuta[i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-4,1'-naphthalene]-16,16,18(7H,17H)-trione" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UDV _cell.length_a 43.584 _cell.length_b 89.37 _cell.length_c 84.952 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UDV _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 PISA dimeric 2 software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C 1 1 A,B,C 2 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 3_557 -x,y,-z+5/2 -1 0 0 0 1 0 0 0 -1 0 0 212.38 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C32 H39 Cl N2 O5 S' _chem_comp.formula_weight 599.18 _chem_comp.id Q51 _chem_comp.mon_nstd_flag . _chem_comp.name "(4S,7aR,9aR,10S,11E,14S,15R)-6'-chloro-10-hydroxy-14,15-dimethyl-3',4',7a,8,9,9a,10,13,14,15-decahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)-16lambda~6~-cyclobuta[i][1,4]oxazepino[3,4-f][1,2,7]thiadiazacyclohexadecine-4,1'-naphthalene]-16,16,18(7H,17H)-trione" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CL1 C17 Q51 sing 277 n n C17 C16 Q51 doub 278 n y C17 C18 Q51 sing 279 n y C16 C15 Q51 sing 280 n y C18 C11 Q51 doub 281 n y C9 O1 Q51 sing 282 n n C9 C8 Q51 sing 283 n n C15 C10 Q51 doub 284 n y C11 C10 Q51 sing 285 n y C11 C12 Q51 sing 286 n n C10 C8 Q51 sing 287 n n C12 C13 Q51 sing 288 n n O1 C2 Q51 sing 289 n n C8 C14 Q51 sing 290 n n C8 C7 Q51 sing 291 n n C14 C13 Q51 sing 292 n n C3 C2 Q51 doub 293 n y C3 C4 Q51 sing 294 n y C2 C1 Q51 sing 295 n y C4 C5 Q51 doub 296 n y C7 N1 Q51 sing 297 n n C1 N1 Q51 sing 298 n n C1 C6 Q51 doub 299 n y N1 C20 Q51 sing 300 n n C5 C6 Q51 sing 301 n y C5 C19 Q51 sing 302 n n O2 C19 Q51 doub 303 n n C19 N2 Q51 sing 304 n n C20 C21 Q51 sing 305 n n N2 S1 Q51 sing 306 n n C21 C24 Q51 sing 307 n n C21 C22 Q51 sing 308 n n C24 C23 Q51 sing 309 n n O5 S1 Q51 doub 310 n n O4 S1 Q51 doub 311 n n S1 C28 Q51 sing 312 n n C22 C23 Q51 sing 313 n n C22 C25 Q51 sing 314 n n C25 C26 Q51 sing 315 n n C25 O3 Q51 sing 316 n n C26 C27 Q51 doub 317 e n C29 C28 Q51 sing 318 n n C29 C31 Q51 sing 319 n n C29 C30 Q51 sing 320 n n C28 C32 Q51 sing 321 n n C27 C30 Q51 sing 322 n n C14 H1 Q51 sing 323 n n C14 H2 Q51 sing 324 n n C13 H3 Q51 sing 325 n n C13 H4 Q51 sing 326 n n C12 H5 Q51 sing 327 n n C12 H6 Q51 sing 328 n n C18 H7 Q51 sing 329 n n C16 H8 Q51 sing 330 n n C15 H9 Q51 sing 331 n n C7 H10 Q51 sing 332 n n C7 H11 Q51 sing 333 n n C9 H12 Q51 sing 334 n n C9 H13 Q51 sing 335 n n C3 H14 Q51 sing 336 n n C4 H15 Q51 sing 337 n n C6 H16 Q51 sing 338 n n C20 H17 Q51 sing 339 n n C20 H18 Q51 sing 340 n n C21 H19 Q51 sing 341 n n C24 H20 Q51 sing 342 n n C24 H21 Q51 sing 343 n n C23 H22 Q51 sing 344 n n C23 H23 Q51 sing 345 n n C22 H24 Q51 sing 346 n n C25 H25 Q51 sing 347 n n O3 H26 Q51 sing 348 n n C26 H27 Q51 sing 349 n n C27 H28 Q51 sing 350 n n C30 H29 Q51 sing 351 n n C30 H30 Q51 sing 352 n n C29 H31 Q51 sing 353 n n C31 H32 Q51 sing 354 n n C31 H33 Q51 sing 355 n n C31 H34 Q51 sing 356 n n C28 H35 Q51 sing 357 n n C32 H36 Q51 sing 358 n n C32 H37 Q51 sing 359 n n C32 H38 Q51 sing 360 n n N2 H39 Q51 sing 361 n n # _atom_sites.entry_id 6UDV _atom_sites.fract_transf_matrix[1][1] 0.022944 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011189 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011771 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q51 A 1 401 1 Q51 UNL . C 3 HOH A 1 501 41 HOH HOH . C 3 HOH A 2 502 115 HOH HOH . C 3 HOH A 3 503 118 HOH HOH . C 3 HOH A 4 504 87 HOH HOH . C 3 HOH A 5 505 156 HOH HOH . C 3 HOH A 6 506 17 HOH HOH . C 3 HOH A 7 507 124 HOH HOH . C 3 HOH A 8 508 129 HOH HOH . C 3 HOH A 9 509 119 HOH HOH . C 3 HOH A 10 510 111 HOH HOH . C 3 HOH A 11 511 69 HOH HOH . C 3 HOH A 12 512 4 HOH HOH . C 3 HOH A 13 513 34 HOH HOH . C 3 HOH A 14 514 23 HOH HOH . C 3 HOH A 15 515 155 HOH HOH . C 3 HOH A 16 516 101 HOH HOH . C 3 HOH A 17 517 54 HOH HOH . C 3 HOH A 18 518 95 HOH HOH . C 3 HOH A 19 519 80 HOH HOH . C 3 HOH A 20 520 12 HOH HOH . C 3 HOH A 21 521 49 HOH HOH . C 3 HOH A 22 522 32 HOH HOH . C 3 HOH A 23 523 27 HOH HOH . C 3 HOH A 24 524 26 HOH HOH . C 3 HOH A 25 525 18 HOH HOH . C 3 HOH A 26 526 106 HOH HOH . C 3 HOH A 27 527 22 HOH HOH . C 3 HOH A 28 528 11 HOH HOH . C 3 HOH A 29 529 24 HOH HOH . C 3 HOH A 30 530 91 HOH HOH . C 3 HOH A 31 531 72 HOH HOH . C 3 HOH A 32 532 40 HOH HOH . C 3 HOH A 33 533 47 HOH HOH . C 3 HOH A 34 534 116 HOH HOH . C 3 HOH A 35 535 63 HOH HOH . C 3 HOH A 36 536 77 HOH HOH . C 3 HOH A 37 537 33 HOH HOH . C 3 HOH A 38 538 39 HOH HOH . C 3 HOH A 39 539 134 HOH HOH . C 3 HOH A 40 540 20 HOH HOH . C 3 HOH A 41 541 31 HOH HOH . C 3 HOH A 42 542 42 HOH HOH . C 3 HOH A 43 543 2 HOH HOH . C 3 HOH A 44 544 114 HOH HOH . C 3 HOH A 45 545 100 HOH HOH . C 3 HOH A 46 546 25 HOH HOH . C 3 HOH A 47 547 142 HOH HOH . C 3 HOH A 48 548 79 HOH HOH . C 3 HOH A 49 549 59 HOH HOH . C 3 HOH A 50 550 137 HOH HOH . C 3 HOH A 51 551 7 HOH HOH . C 3 HOH A 52 552 52 HOH HOH . C 3 HOH A 53 553 153 HOH HOH . C 3 HOH A 54 554 144 HOH HOH . C 3 HOH A 55 555 132 HOH HOH . C 3 HOH A 56 556 6 HOH HOH . C 3 HOH A 57 557 78 HOH HOH . C 3 HOH A 58 558 13 HOH HOH . C 3 HOH A 59 559 45 HOH HOH . C 3 HOH A 60 560 126 HOH HOH . C 3 HOH A 61 561 68 HOH HOH . C 3 HOH A 62 562 147 HOH HOH . C 3 HOH A 63 563 97 HOH HOH . C 3 HOH A 64 564 143 HOH HOH . C 3 HOH A 65 565 3 HOH HOH . C 3 HOH A 66 566 64 HOH HOH . C 3 HOH A 67 567 44 HOH HOH . C 3 HOH A 68 568 36 HOH HOH . C 3 HOH A 69 569 65 HOH HOH . C 3 HOH A 70 570 5 HOH HOH . C 3 HOH A 71 571 62 HOH HOH . C 3 HOH A 72 572 135 HOH HOH . C 3 HOH A 73 573 10 HOH HOH . C 3 HOH A 74 574 90 HOH HOH . C 3 HOH A 75 575 56 HOH HOH . C 3 HOH A 76 576 16 HOH HOH . C 3 HOH A 77 577 89 HOH HOH . C 3 HOH A 78 578 51 HOH HOH . C 3 HOH A 79 579 103 HOH HOH . C 3 HOH A 80 580 96 HOH HOH . C 3 HOH A 81 581 104 HOH HOH . C 3 HOH A 82 582 29 HOH HOH . C 3 HOH A 83 583 151 HOH HOH . C 3 HOH A 84 584 105 HOH HOH . C 3 HOH A 85 585 30 HOH HOH . C 3 HOH A 86 586 75 HOH HOH . C 3 HOH A 87 587 99 HOH HOH . C 3 HOH A 88 588 8 HOH HOH . C 3 HOH A 89 589 9 HOH HOH . C 3 HOH A 90 590 57 HOH HOH . C 3 HOH A 91 591 108 HOH HOH . C 3 HOH A 92 592 35 HOH HOH . C 3 HOH A 93 593 15 HOH HOH . C 3 HOH A 94 594 28 HOH HOH . C 3 HOH A 95 595 84 HOH HOH . C 3 HOH A 96 596 74 HOH HOH . C 3 HOH A 97 597 21 HOH HOH . C 3 HOH A 98 598 146 HOH HOH . C 3 HOH A 99 599 55 HOH HOH . C 3 HOH A 100 600 37 HOH HOH . C 3 HOH A 101 601 1 HOH HOH . C 3 HOH A 102 602 43 HOH HOH . C 3 HOH A 103 603 120 HOH HOH . C 3 HOH A 104 604 141 HOH HOH . C 3 HOH A 105 605 71 HOH HOH . C 3 HOH A 106 606 121 HOH HOH . C 3 HOH A 107 607 38 HOH HOH . C 3 HOH A 108 608 14 HOH HOH . C 3 HOH A 109 609 125 HOH HOH . C 3 HOH A 110 610 93 HOH HOH . C 3 HOH A 111 611 86 HOH HOH . C 3 HOH A 112 612 123 HOH HOH . C 3 HOH A 113 613 139 HOH HOH . C 3 HOH A 114 614 107 HOH HOH . C 3 HOH A 115 615 98 HOH HOH . C 3 HOH A 116 616 70 HOH HOH . C 3 HOH A 117 617 150 HOH HOH . C 3 HOH A 118 618 92 HOH HOH . C 3 HOH A 119 619 138 HOH HOH . C 3 HOH A 120 620 19 HOH HOH . C 3 HOH A 121 621 102 HOH HOH . C 3 HOH A 122 622 145 HOH HOH . C 3 HOH A 123 623 109 HOH HOH . C 3 HOH A 124 624 50 HOH HOH . C 3 HOH A 125 625 88 HOH HOH . C 3 HOH A 126 626 46 HOH HOH . C 3 HOH A 127 627 136 HOH HOH . C 3 HOH A 128 628 112 HOH HOH . C 3 HOH A 129 629 94 HOH HOH . C 3 HOH A 130 630 73 HOH HOH . C 3 HOH A 131 631 83 HOH HOH . C 3 HOH A 132 632 149 HOH HOH . C 3 HOH A 133 633 133 HOH HOH . C 3 HOH A 134 634 122 HOH HOH . C 3 HOH A 135 635 140 HOH HOH . C 3 HOH A 136 636 152 HOH HOH . C 3 HOH A 137 637 76 HOH HOH . C 3 HOH A 138 638 113 HOH HOH . C 3 HOH A 139 639 58 HOH HOH . C 3 HOH A 140 640 61 HOH HOH . C 3 HOH A 141 641 127 HOH HOH . C 3 HOH A 142 642 82 HOH HOH . C 3 HOH A 143 643 148 HOH HOH . C 3 HOH A 144 644 85 HOH HOH . C 3 HOH A 145 645 154 HOH HOH . C 3 HOH A 146 646 81 HOH HOH . C 3 HOH A 147 647 110 HOH HOH . C 3 HOH A 148 648 117 HOH HOH . C 3 HOH A 149 649 130 HOH HOH . C 3 HOH A 150 650 53 HOH HOH . C 3 HOH A 151 651 60 HOH HOH . C 3 HOH A 152 652 128 HOH HOH . C 3 HOH A 153 653 131 HOH HOH . C 3 HOH A 154 654 67 HOH HOH . C 3 HOH A 155 655 66 HOH HOH . C 3 HOH A 156 656 48 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C14 Q51 . . . B 2 9.211 1.397 96.931 1 11.55 ? C14 Q51 401 A 1 HETATM 2 C C13 Q51 . . . B 2 10.666 1.391 97.408 1 12.53 ? C13 Q51 401 A 1 HETATM 3 C C12 Q51 . . . B 2 11.531 2.164 96.423 1 12.57 ? C12 Q51 401 A 1 HETATM 4 C C11 Q51 . . . B 2 10.938 3.533 96.143 1 11.33 ? C11 Q51 401 A 1 HETATM 5 C C18 Q51 . . . B 2 11.778 4.512 95.637 1 12.12 ? C18 Q51 401 A 1 HETATM 6 C C17 Q51 . . . B 2 11.316 5.787 95.366 1 12.74 ? C17 Q51 401 A 1 HETATM 7 CL CL1 Q51 . . . B 2 12.415 6.941 94.729 1 17.16 ? CL1 Q51 401 A 1 HETATM 8 C C16 Q51 . . . B 2 9.986 6.099 95.59 1 11.76 ? C16 Q51 401 A 1 HETATM 9 C C15 Q51 . . . B 2 9.145 5.13 96.089 1 11.26 ? C15 Q51 401 A 1 HETATM 10 C C10 Q51 . . . B 2 9.587 3.853 96.369 1 10.8 ? C10 Q51 401 A 1 HETATM 11 C C8 Q51 . . . B 2 8.592 2.82 96.927 1 11.13 ? C8 Q51 401 A 1 HETATM 12 C C7 Q51 . . . B 2 8.156 3.208 98.357 1 11.09 ? C7 Q51 401 A 1 HETATM 13 C C9 Q51 . . . B 2 7.324 2.766 96.063 1 11.05 ? C9 Q51 401 A 1 HETATM 14 O O1 Q51 . . . B 2 6.377 3.787 96.45 1 11.1 ? O1 Q51 401 A 1 HETATM 15 C C2 Q51 . . . B 2 5.474 3.397 97.409 1 10.88 ? C2 Q51 401 A 1 HETATM 16 C C3 Q51 . . . B 2 4.154 3.778 97.146 1 11.61 ? C3 Q51 401 A 1 HETATM 17 C C4 Q51 . . . B 2 3.136 3.422 98.016 1 12.37 ? C4 Q51 401 A 1 HETATM 18 C C5 Q51 . . . B 2 3.408 2.668 99.145 1 12.76 ? C5 Q51 401 A 1 HETATM 19 C C6 Q51 . . . B 2 4.737 2.295 99.401 1 11.57 ? C6 Q51 401 A 1 HETATM 20 C C1 Q51 . . . B 2 5.793 2.663 98.557 1 11.05 ? C1 Q51 401 A 1 HETATM 21 N N1 Q51 . . . B 2 7.092 2.298 98.816 1 11.03 ? N1 Q51 401 A 1 HETATM 22 C C20 Q51 . . . B 2 7.418 1.539 100.077 1 11.41 ? C20 Q51 401 A 1 HETATM 23 C C21 Q51 . . . B 2 7.309 2.356 101.39 1 12.28 ? C21 Q51 401 A 1 HETATM 24 C C24 Q51 . . . B 2 8.507 3.25 101.739 1 13.02 ? C24 Q51 401 A 1 HETATM 25 C C23 Q51 . . . B 2 8.39 2.74 103.193 1 13.17 ? C23 Q51 401 A 1 HETATM 26 C C22 Q51 . . . B 2 7.697 1.499 102.614 1 13.75 ? C22 Q51 401 A 1 HETATM 27 C C25 Q51 . . . B 2 6.499 0.94 103.42 1 15.87 ? C25 Q51 401 A 1 HETATM 28 O O3 Q51 . . . B 2 7.005 0.357 104.634 1 17.33 ? O3 Q51 401 A 1 HETATM 29 C C26 Q51 . . . B 2 5.389 1.971 103.7 1 18.13 ? C26 Q51 401 A 1 HETATM 30 C C27 Q51 . . . B 2 5.134 2.552 104.932 1 20.52 ? C27 Q51 401 A 1 HETATM 31 C C30 Q51 . . . B 2 4.007 3.587 105.131 1 20.29 ? C30 Q51 401 A 1 HETATM 32 C C29 Q51 . . . B 2 2.932 3.572 104.032 1 20.63 ? C29 Q51 401 A 1 HETATM 33 C C31 Q51 . . . B 2 2.026 4.82 104.121 1 20.75 ? C31 Q51 401 A 1 HETATM 34 C C28 Q51 . . . B 2 2.127 2.267 104.059 1 21.84 ? C28 Q51 401 A 1 HETATM 35 C C32 Q51 . . . B 2 1.117 2.233 105.191 1 23.77 ? C32 Q51 401 A 1 HETATM 36 S S1 Q51 . . . B 2 1.334 1.975 102.438 1 21.94 ? S1 Q51 401 A 1 HETATM 37 O O4 Q51 . . . B 2 0.79 0.591 102.364 1 23.91 ? O4 Q51 401 A 1 HETATM 38 O O5 Q51 . . . B 2 0.281 2.984 102.042 1 21.55 ? O5 Q51 401 A 1 HETATM 39 N N2 Q51 . . . B 2 2.516 2.236 101.349 1 20.2 ? N2 Q51 401 A 1 HETATM 40 C C19 Q51 . . . B 2 2.238 2.307 100.058 1 17.04 ? C19 Q51 401 A 1 HETATM 41 O O2 Q51 . . . B 2 1.13 2.042 99.564 1 21.49 ? O2 Q51 401 A 1 # _model_server_stats.io_time_ms 70 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 41 #