data_6UEC # _model_server_result.job_id AAw-mcb3RtG5WHCeOLyu1g _model_server_result.datetime_utc '2025-03-23 12:41:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uec # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6UEC # _exptl.entry_id 6UEC _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 228.243 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(naphthalen-1-yl)-4-oxobutanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6UEC _cell.length_a 104.764 _cell.length_b 104.764 _cell.length_c 95.967 _cell.Z_PDB 9 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UEC _symmetry.cell_setting ? _symmetry.Int_Tables_number 146 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D MG MG . A MG 403 1_555 E O HOH . A HOH 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc2 D MG MG . A MG 403 1_555 E O HOH . A HOH 504 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.922 ? metalc ? metalc3 D MG MG . A MG 403 1_555 E O HOH . A HOH 510 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc4 D MG MG . A MG 403 1_555 E O HOH . A HOH 510 2_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? # _chem_comp.formula 'C14 H12 O3' _chem_comp.formula_weight 228.243 _chem_comp.id Q5M _chem_comp.mon_nstd_flag . _chem_comp.name '4-(naphthalen-1-yl)-4-oxobutanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C01 C02 Q5M doub 286 n y C01 C06 Q5M sing 287 n y C02 C03 Q5M sing 288 n y C06 C05 Q5M doub 289 n y C03 C04 Q5M doub 290 n y C05 C04 Q5M sing 291 n y C05 C07 Q5M sing 292 n y C04 C10 Q5M sing 293 n y O12 C11 Q5M doub 294 n n C07 C08 Q5M doub 295 n y C10 C11 Q5M sing 296 n n C10 C09 Q5M doub 297 n y C11 C13 Q5M sing 298 n n C08 C09 Q5M sing 299 n y C13 C14 Q5M sing 300 n n C14 C15 Q5M sing 301 n n O16 C15 Q5M doub 302 n n C15 O17 Q5M sing 303 n n C13 H1 Q5M sing 304 n n C13 H2 Q5M sing 305 n n C01 H3 Q5M sing 306 n n C02 H4 Q5M sing 307 n n C03 H5 Q5M sing 308 n n C06 H6 Q5M sing 309 n n C07 H7 Q5M sing 310 n n C08 H8 Q5M sing 311 n n C09 H9 Q5M sing 312 n n C14 H10 Q5M sing 313 n n C14 H11 Q5M sing 314 n n O17 H12 Q5M sing 315 n n # _atom_sites.entry_id 6UEC _atom_sites.fract_transf_matrix[1][1] 0.009545 _atom_sites.fract_transf_matrix[1][2] 0.005511 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011022 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01042 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q5M A 1 401 401 Q5M LIG . C 3 DMS A 1 402 601 DMS DMS . D 4 MG A 1 403 1 MG MG . E 5 HOH A 1 501 30 HOH HOH . E 5 HOH A 2 502 15 HOH HOH . E 5 HOH A 3 503 7 HOH HOH . E 5 HOH A 4 504 23 HOH HOH . E 5 HOH A 5 505 11 HOH HOH . E 5 HOH A 6 506 4 HOH HOH . E 5 HOH A 7 507 5 HOH HOH . E 5 HOH A 8 508 6 HOH HOH . E 5 HOH A 9 509 24 HOH HOH . E 5 HOH A 10 510 22 HOH HOH . E 5 HOH A 11 511 29 HOH HOH . E 5 HOH A 12 512 17 HOH HOH . E 5 HOH A 13 513 8 HOH HOH . E 5 HOH A 14 514 3 HOH HOH . E 5 HOH A 15 515 14 HOH HOH . E 5 HOH A 16 516 10 HOH HOH . E 5 HOH A 17 517 18 HOH HOH . E 5 HOH A 18 518 25 HOH HOH . E 5 HOH A 19 519 12 HOH HOH . E 5 HOH A 20 520 26 HOH HOH . E 5 HOH A 21 521 9 HOH HOH . E 5 HOH A 22 522 13 HOH HOH . E 5 HOH A 23 523 28 HOH HOH . E 5 HOH A 24 524 27 HOH HOH . E 5 HOH A 25 525 19 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 Q5M . . . B 2 -7.659 8.47 -10.633 1 54.75 ? C10 Q5M 401 A 1 HETATM 2 C C13 Q5M . . . B 2 -8.68 11.115 -10.645 1 63.49 ? C13 Q5M 401 A 1 HETATM 3 C C15 Q5M . . . B 2 -10.281 10.851 -12.776 1 59.62 ? C15 Q5M 401 A 1 HETATM 4 C C01 Q5M . . . B 2 -7.121 5.428 -13.554 1 48.42 ? C01 Q5M 401 A 1 HETATM 5 C C02 Q5M . . . B 2 -7.178 6.766 -13.987 1 44.55 ? C02 Q5M 401 A 1 HETATM 6 C C03 Q5M . . . B 2 -7.353 7.769 -13.05 1 48.19 ? C03 Q5M 401 A 1 HETATM 7 C C04 Q5M . . . B 2 -7.473 7.414 -11.638 1 51.63 ? C04 Q5M 401 A 1 HETATM 8 C C05 Q5M . . . B 2 -7.408 6.07 -11.238 1 50.4 ? C05 Q5M 401 A 1 HETATM 9 C C06 Q5M . . . B 2 -7.235 5.052 -12.218 1 40.87 ? C06 Q5M 401 A 1 HETATM 10 C C07 Q5M . . . B 2 -7.519 5.701 -9.837 1 53.99 ? C07 Q5M 401 A 1 HETATM 11 C C08 Q5M . . . B 2 -7.698 6.722 -8.873 1 54.52 ? C08 Q5M 401 A 1 HETATM 12 C C09 Q5M . . . B 2 -7.753 8.088 -9.257 1 51.24 ? C09 Q5M 401 A 1 HETATM 13 C C11 Q5M . . . B 2 -7.677 9.98 -11.1 1 58.63 ? C11 Q5M 401 A 1 HETATM 14 O O12 Q5M . . . B 2 -6.814 10.268 -11.895 1 48.88 ? O12 Q5M 401 A 1 HETATM 15 C C14 Q5M . . . B 2 -9.53 11.812 -11.777 1 56.91 ? C14 Q5M 401 A 1 HETATM 16 O O16 Q5M . . . B 2 -10.883 11.176 -13.852 1 59.23 -1 O16 Q5M 401 A 1 HETATM 17 O O17 Q5M . . . B 2 -10.317 9.625 -12.549 1 52.32 ? O17 Q5M 401 A 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 17 #