data_6UEJ
#
_model_server_result.job_id            SL-FY7VRRRSznNzCEoVfTQ 
_model_server_result.datetime_utc      '2025-09-01 02:47:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uej 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"G","auth_seq_id":101}' 
#
_entry.id    6UEJ 
#
_exptl.entry_id    6UEJ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              202.34 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            SPERMINE 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            6UEJ 
_cell.length_a            123.09 
_cell.length_b            123.09 
_cell.length_c            40.67 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UEJ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        170 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 65' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      4 
_struct_asym.id                             G 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A SG CYS 75 A CYS 73 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? 
metalc ? metalc2 A SG CYS 80 A CYS 78 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.295 ? 
metalc ? metalc3 A SG CYS 84 A CYS 82 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.296 ? 
metalc ? metalc4 A NE2 HIS 88 A HIS 86 1_555 C ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.166 ? 
metalc ? metalc5 A SG CYS 90 A CYS 88 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.322 ? 
metalc ? metalc6 A SG CYS 98 A CYS 96 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.256 ? 
metalc ? metalc7 A SG CYS 108 A CYS 106 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.268 ? 
metalc ? metalc8 A NE2 HIS 112 A HIS 110 1_555 D ZN ZN . A ZN 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? 
metalc ? metalc9 A SG CYS 152 A CYS 150 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.272 ? 
metalc ? metalc10 A SG CYS 164 A CYS 162 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.557 ? 
metalc ? metalc11 A SG CYS 170 A CYS 168 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.378 ? 
metalc ? metalc12 A NE2 HIS 174 A HIS 172 1_555 F ZN ZN . A ZN 504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? 
metalc ? metalc13 A SG CYS 176 A CYS 174 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? 
metalc ? metalc14 A SG CYS 184 A CYS 182 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? 
metalc ? metalc15 A SG CYS 189 A CYS 187 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.469 ? 
metalc ? metalc16 A NE2 HIS 193 A HIS 191 1_555 E ZN ZN . A ZN 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? 
#
_chem_comp.formula           'C10 H26 N4' 
_chem_comp.formula_weight    202.34 
_chem_comp.id                SPM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              SPERMINE 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 SPM sing 366 n n 
N1 HN11 SPM sing 367 n n 
N1 HN12 SPM sing 368 n n 
C2 C3 SPM sing 369 n n 
C2 H21 SPM sing 370 n n 
C2 H22 SPM sing 371 n n 
C3 C4 SPM sing 372 n n 
C3 H31 SPM sing 373 n n 
C3 H32 SPM sing 374 n n 
C4 N5 SPM sing 375 n n 
C4 H41 SPM sing 376 n n 
C4 H42 SPM sing 377 n n 
N5 C6 SPM sing 378 n n 
N5 HN5 SPM sing 379 n n 
C6 C7 SPM sing 380 n n 
C6 H61 SPM sing 381 n n 
C6 H62 SPM sing 382 n n 
C7 C8 SPM sing 383 n n 
C7 H71 SPM sing 384 n n 
C7 H72 SPM sing 385 n n 
C8 C9 SPM sing 386 n n 
C8 H81 SPM sing 387 n n 
C8 H82 SPM sing 388 n n 
C9 N10 SPM sing 389 n n 
C9 H91 SPM sing 390 n n 
C9 H92 SPM sing 391 n n 
N10 C11 SPM sing 392 n n 
N10 HN0 SPM sing 393 n n 
C11 C12 SPM sing 394 n n 
C11 H111 SPM sing 395 n n 
C11 H112 SPM sing 396 n n 
C12 C13 SPM sing 397 n n 
C12 H121 SPM sing 398 n n 
C12 H122 SPM sing 399 n n 
C13 N14 SPM sing 400 n n 
C13 H131 SPM sing 401 n n 
C13 H132 SPM sing 402 n n 
N14 HN41 SPM sing 403 n n 
N14 HN42 SPM sing 404 n n 
#
_atom_sites.entry_id                     6UEJ 
_atom_sites.fract_transf_matrix[1][1]    0.008124 
_atom_sites.fract_transf_matrix[1][2]    0.00469 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009381 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.024588 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 ZN A 1 501 501 ZN ZN . 
D 3 ZN A 1 502 502 ZN ZN . 
E 3 ZN A 1 503 504 ZN ZN . 
F 3 ZN A 1 504 503 ZN ZN . 
G 4 SPM B 1 101 1 SPM SPM . 
H 5 HOH A 1 601 17 HOH HOH . 
H 5 HOH A 2 602 38 HOH HOH . 
H 5 HOH A 3 603 23 HOH HOH . 
H 5 HOH A 4 604 61 HOH HOH . 
H 5 HOH A 5 605 50 HOH HOH . 
H 5 HOH A 6 606 31 HOH HOH . 
H 5 HOH A 7 607 112 HOH HOH . 
H 5 HOH A 8 608 15 HOH HOH . 
H 5 HOH A 9 609 75 HOH HOH . 
H 5 HOH A 10 610 51 HOH HOH . 
H 5 HOH A 11 611 85 HOH HOH . 
H 5 HOH A 12 612 59 HOH HOH . 
H 5 HOH A 13 613 42 HOH HOH . 
H 5 HOH A 14 614 21 HOH HOH . 
H 5 HOH A 15 615 20 HOH HOH . 
H 5 HOH A 16 616 14 HOH HOH . 
H 5 HOH A 17 617 81 HOH HOH . 
H 5 HOH A 18 618 70 HOH HOH . 
H 5 HOH A 19 619 62 HOH HOH . 
H 5 HOH A 20 620 64 HOH HOH . 
H 5 HOH A 21 621 22 HOH HOH . 
H 5 HOH A 22 622 126 HOH HOH . 
H 5 HOH A 23 623 6 HOH HOH . 
H 5 HOH A 24 624 74 HOH HOH . 
H 5 HOH A 25 625 7 HOH HOH . 
H 5 HOH A 26 626 3 HOH HOH . 
H 5 HOH A 27 627 72 HOH HOH . 
H 5 HOH A 28 628 53 HOH HOH . 
H 5 HOH A 29 629 82 HOH HOH . 
H 5 HOH A 30 630 106 HOH HOH . 
H 5 HOH A 31 631 9 HOH HOH . 
H 5 HOH A 32 632 16 HOH HOH . 
H 5 HOH A 33 633 36 HOH HOH . 
H 5 HOH A 34 634 67 HOH HOH . 
H 5 HOH A 35 635 28 HOH HOH . 
H 5 HOH A 36 636 4 HOH HOH . 
H 5 HOH A 37 637 68 HOH HOH . 
H 5 HOH A 38 638 57 HOH HOH . 
H 5 HOH A 39 639 84 HOH HOH . 
H 5 HOH A 40 640 26 HOH HOH . 
H 5 HOH A 41 641 125 HOH HOH . 
H 5 HOH A 42 642 45 HOH HOH . 
H 5 HOH A 43 643 139 HOH HOH . 
H 5 HOH A 44 644 24 HOH HOH . 
H 5 HOH A 45 645 35 HOH HOH . 
H 5 HOH A 46 646 78 HOH HOH . 
H 5 HOH A 47 647 58 HOH HOH . 
H 5 HOH A 48 648 91 HOH HOH . 
H 5 HOH A 49 649 141 HOH HOH . 
H 5 HOH A 50 650 13 HOH HOH . 
H 5 HOH A 51 651 134 HOH HOH . 
H 5 HOH A 52 652 41 HOH HOH . 
H 5 HOH A 53 653 69 HOH HOH . 
H 5 HOH A 54 654 12 HOH HOH . 
H 5 HOH A 55 655 60 HOH HOH . 
H 5 HOH A 56 656 2 HOH HOH . 
H 5 HOH A 57 657 27 HOH HOH . 
H 5 HOH A 58 658 39 HOH HOH . 
H 5 HOH A 59 659 90 HOH HOH . 
H 5 HOH A 60 660 97 HOH HOH . 
H 5 HOH A 61 661 19 HOH HOH . 
H 5 HOH A 62 662 8 HOH HOH . 
H 5 HOH A 63 663 79 HOH HOH . 
H 5 HOH A 64 664 88 HOH HOH . 
H 5 HOH A 65 665 1 HOH HOH . 
H 5 HOH A 66 666 100 HOH HOH . 
H 5 HOH A 67 667 107 HOH HOH . 
H 5 HOH A 68 668 30 HOH HOH . 
H 5 HOH A 69 669 110 HOH HOH . 
H 5 HOH A 70 670 93 HOH HOH . 
H 5 HOH A 71 671 34 HOH HOH . 
H 5 HOH A 72 672 25 HOH HOH . 
H 5 HOH A 73 673 11 HOH HOH . 
H 5 HOH A 74 674 37 HOH HOH . 
H 5 HOH A 75 675 122 HOH HOH . 
H 5 HOH A 76 676 10 HOH HOH . 
H 5 HOH A 77 677 76 HOH HOH . 
H 5 HOH A 78 678 131 HOH HOH . 
H 5 HOH A 79 679 98 HOH HOH . 
H 5 HOH A 80 680 40 HOH HOH . 
H 5 HOH A 81 681 140 HOH HOH . 
H 5 HOH A 82 682 94 HOH HOH . 
H 5 HOH A 83 683 52 HOH HOH . 
H 5 HOH A 84 684 101 HOH HOH . 
H 5 HOH A 85 685 104 HOH HOH . 
H 5 HOH A 86 686 128 HOH HOH . 
H 5 HOH A 87 687 109 HOH HOH . 
H 5 HOH A 88 688 138 HOH HOH . 
H 5 HOH A 89 689 80 HOH HOH . 
I 5 HOH B 1 201 77 HOH HOH . 
I 5 HOH B 2 202 47 HOH HOH . 
I 5 HOH B 3 203 65 HOH HOH . 
I 5 HOH B 4 204 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N5 SPM . . . G 4 -73.054 -14.25 12.059 1 89.31 ? N5 SPM 101 B 1 
HETATM 2 C C6 SPM . . . G 4 -72.875 -13.097 11.175 1 91.56 ? C6 SPM 101 B 1 
HETATM 3 C C7 SPM . . . G 4 -72.021 -12.013 11.849 1 93.53 ? C7 SPM 101 B 1 
HETATM 4 C C8 SPM . . . G 4 -70.782 -11.705 10.999 1 95.24 ? C8 SPM 101 B 1 
HETATM 5 C C9 SPM . . . G 4 -70.975 -10.486 10.073 1 96.57 ? C9 SPM 101 B 1 
HETATM 6 N N10 SPM . . . G 4 -72.003 -10.652 9.012 1 97.73 ? N10 SPM 101 B 1 
HETATM 7 C C11 SPM . . . G 4 -71.577 -11.618 7.974 1 97.79 ? C11 SPM 101 B 1 
HETATM 8 C C12 SPM . . . G 4 -70.715 -10.975 6.875 1 96.47 ? C12 SPM 101 B 1 
HETATM 9 C C13 SPM . . . G 4 -69.941 -12.052 6.106 1 93.89 ? C13 SPM 101 B 1 
HETATM 10 N N14 SPM . . . G 4 -70.848 -12.718 5.159 1 93.15 ? N14 SPM 101 B 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           373 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           10 
#