data_6UFD # _model_server_result.job_id lrgAlgicfEDCl2hgZVoUbA _model_server_result.datetime_utc '2024-11-16 06:54:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ufd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 6UFD # _exptl.entry_id 6UFD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 104.583 _cell.angle_gamma 90 _cell.entry_id 6UFD _cell.length_a 42.593 _cell.length_b 41.649 _cell.length_c 72.315 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UFD _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 94 A HIS 94 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? metalc ? metalc2 A NE2 HIS 96 A HIS 96 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? metalc ? metalc3 A ND1 HIS 119 A HIS 119 1_555 B ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? metalc ? metalc4 B ZN ZN . A ZN 301 1_555 F N22 Q6D . A Q6D 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6UFD _atom_sites.fract_transf_matrix[1][1] 0.023478 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006108 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02401 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014289 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 301 262 ZN ZN . C 3 GOL A 1 302 1 GOL GOL . D 3 GOL A 1 303 2 GOL GOL . E 3 GOL A 1 304 3 GOL GOL . F 4 Q6D A 1 305 2 Q6D UNL . G 5 CL A 1 306 1 CL CL . H 6 HOH A 1 401 185 HOH HOH . H 6 HOH A 2 402 209 HOH HOH . H 6 HOH A 3 403 219 HOH HOH . H 6 HOH A 4 404 213 HOH HOH . H 6 HOH A 5 405 211 HOH HOH . H 6 HOH A 6 406 234 HOH HOH . H 6 HOH A 7 407 246 HOH HOH . H 6 HOH A 8 408 206 HOH HOH . H 6 HOH A 9 409 119 HOH HOH . H 6 HOH A 10 410 243 HOH HOH . H 6 HOH A 11 411 188 HOH HOH . H 6 HOH A 12 412 48 HOH HOH . H 6 HOH A 13 413 132 HOH HOH . H 6 HOH A 14 414 196 HOH HOH . H 6 HOH A 15 415 4 HOH HOH . H 6 HOH A 16 416 79 HOH HOH . H 6 HOH A 17 417 172 HOH HOH . H 6 HOH A 18 418 34 HOH HOH . H 6 HOH A 19 419 143 HOH HOH . H 6 HOH A 20 420 16 HOH HOH . H 6 HOH A 21 421 154 HOH HOH . H 6 HOH A 22 422 32 HOH HOH . H 6 HOH A 23 423 237 HOH HOH . H 6 HOH A 24 424 58 HOH HOH . H 6 HOH A 25 425 103 HOH HOH . H 6 HOH A 26 426 17 HOH HOH . H 6 HOH A 27 427 115 HOH HOH . H 6 HOH A 28 428 149 HOH HOH . H 6 HOH A 29 429 33 HOH HOH . H 6 HOH A 30 430 192 HOH HOH . H 6 HOH A 31 431 42 HOH HOH . H 6 HOH A 32 432 95 HOH HOH . H 6 HOH A 33 433 179 HOH HOH . H 6 HOH A 34 434 134 HOH HOH . H 6 HOH A 35 435 139 HOH HOH . H 6 HOH A 36 436 60 HOH HOH . H 6 HOH A 37 437 155 HOH HOH . H 6 HOH A 38 438 199 HOH HOH . H 6 HOH A 39 439 150 HOH HOH . H 6 HOH A 40 440 91 HOH HOH . H 6 HOH A 41 441 52 HOH HOH . H 6 HOH A 42 442 102 HOH HOH . H 6 HOH A 43 443 19 HOH HOH . H 6 HOH A 44 444 78 HOH HOH . H 6 HOH A 45 445 121 HOH HOH . H 6 HOH A 46 446 114 HOH HOH . H 6 HOH A 47 447 204 HOH HOH . H 6 HOH A 48 448 46 HOH HOH . H 6 HOH A 49 449 164 HOH HOH . H 6 HOH A 50 450 168 HOH HOH . H 6 HOH A 51 451 11 HOH HOH . H 6 HOH A 52 452 57 HOH HOH . H 6 HOH A 53 453 44 HOH HOH . H 6 HOH A 54 454 156 HOH HOH . H 6 HOH A 55 455 148 HOH HOH . H 6 HOH A 56 456 247 HOH HOH . H 6 HOH A 57 457 111 HOH HOH . H 6 HOH A 58 458 158 HOH HOH . H 6 HOH A 59 459 141 HOH HOH . H 6 HOH A 60 460 28 HOH HOH . H 6 HOH A 61 461 70 HOH HOH . H 6 HOH A 62 462 31 HOH HOH . H 6 HOH A 63 463 169 HOH HOH . H 6 HOH A 64 464 45 HOH HOH . H 6 HOH A 65 465 25 HOH HOH . H 6 HOH A 66 466 55 HOH HOH . H 6 HOH A 67 467 76 HOH HOH . H 6 HOH A 68 468 112 HOH HOH . H 6 HOH A 69 469 131 HOH HOH . H 6 HOH A 70 470 128 HOH HOH . H 6 HOH A 71 471 100 HOH HOH . H 6 HOH A 72 472 8 HOH HOH . H 6 HOH A 73 473 7 HOH HOH . H 6 HOH A 74 474 205 HOH HOH . H 6 HOH A 75 475 110 HOH HOH . H 6 HOH A 76 476 10 HOH HOH . H 6 HOH A 77 477 12 HOH HOH . H 6 HOH A 78 478 105 HOH HOH . H 6 HOH A 79 479 190 HOH HOH . H 6 HOH A 80 480 163 HOH HOH . H 6 HOH A 81 481 113 HOH HOH . H 6 HOH A 82 482 104 HOH HOH . H 6 HOH A 83 483 127 HOH HOH . H 6 HOH A 84 484 239 HOH HOH . H 6 HOH A 85 485 73 HOH HOH . H 6 HOH A 86 486 126 HOH HOH . H 6 HOH A 87 487 137 HOH HOH . H 6 HOH A 88 488 6 HOH HOH . H 6 HOH A 89 489 29 HOH HOH . H 6 HOH A 90 490 83 HOH HOH . H 6 HOH A 91 491 30 HOH HOH . H 6 HOH A 92 492 22 HOH HOH . H 6 HOH A 93 493 14 HOH HOH . H 6 HOH A 94 494 146 HOH HOH . H 6 HOH A 95 495 159 HOH HOH . H 6 HOH A 96 496 9 HOH HOH . H 6 HOH A 97 497 117 HOH HOH . H 6 HOH A 98 498 13 HOH HOH . H 6 HOH A 99 499 54 HOH HOH . H 6 HOH A 100 500 161 HOH HOH . H 6 HOH A 101 501 129 HOH HOH . H 6 HOH A 102 502 59 HOH HOH . H 6 HOH A 103 503 195 HOH HOH . H 6 HOH A 104 504 135 HOH HOH . H 6 HOH A 105 505 120 HOH HOH . H 6 HOH A 106 506 101 HOH HOH . H 6 HOH A 107 507 198 HOH HOH . H 6 HOH A 108 508 3 HOH HOH . H 6 HOH A 109 509 65 HOH HOH . H 6 HOH A 110 510 130 HOH HOH . H 6 HOH A 111 511 39 HOH HOH . H 6 HOH A 112 512 82 HOH HOH . H 6 HOH A 113 513 94 HOH HOH . H 6 HOH A 114 514 153 HOH HOH . H 6 HOH A 115 515 203 HOH HOH . H 6 HOH A 116 516 89 HOH HOH . H 6 HOH A 117 517 5 HOH HOH . H 6 HOH A 118 518 142 HOH HOH . H 6 HOH A 119 519 207 HOH HOH . H 6 HOH A 120 520 107 HOH HOH . H 6 HOH A 121 521 193 HOH HOH . H 6 HOH A 122 522 37 HOH HOH . H 6 HOH A 123 523 36 HOH HOH . H 6 HOH A 124 524 49 HOH HOH . H 6 HOH A 125 525 47 HOH HOH . H 6 HOH A 126 526 74 HOH HOH . H 6 HOH A 127 527 125 HOH HOH . H 6 HOH A 128 528 99 HOH HOH . H 6 HOH A 129 529 170 HOH HOH . H 6 HOH A 130 530 157 HOH HOH . H 6 HOH A 131 531 75 HOH HOH . H 6 HOH A 132 532 27 HOH HOH . H 6 HOH A 133 533 166 HOH HOH . H 6 HOH A 134 534 84 HOH HOH . H 6 HOH A 135 535 248 HOH HOH . H 6 HOH A 136 536 116 HOH HOH . H 6 HOH A 137 537 56 HOH HOH . H 6 HOH A 138 538 87 HOH HOH . H 6 HOH A 139 539 2 HOH HOH . H 6 HOH A 140 540 23 HOH HOH . H 6 HOH A 141 541 109 HOH HOH . H 6 HOH A 142 542 69 HOH HOH . H 6 HOH A 143 543 67 HOH HOH . H 6 HOH A 144 544 187 HOH HOH . H 6 HOH A 145 545 68 HOH HOH . H 6 HOH A 146 546 71 HOH HOH . H 6 HOH A 147 547 171 HOH HOH . H 6 HOH A 148 548 191 HOH HOH . H 6 HOH A 149 549 86 HOH HOH . H 6 HOH A 150 550 18 HOH HOH . H 6 HOH A 151 551 208 HOH HOH . H 6 HOH A 152 552 152 HOH HOH . H 6 HOH A 153 553 64 HOH HOH . H 6 HOH A 154 554 151 HOH HOH . H 6 HOH A 155 555 77 HOH HOH . H 6 HOH A 156 556 108 HOH HOH . H 6 HOH A 157 557 200 HOH HOH . H 6 HOH A 158 558 24 HOH HOH . H 6 HOH A 159 559 118 HOH HOH . H 6 HOH A 160 560 90 HOH HOH . H 6 HOH A 161 561 245 HOH HOH . H 6 HOH A 162 562 80 HOH HOH . H 6 HOH A 163 563 38 HOH HOH . H 6 HOH A 164 564 85 HOH HOH . H 6 HOH A 165 565 51 HOH HOH . H 6 HOH A 166 566 98 HOH HOH . H 6 HOH A 167 567 201 HOH HOH . H 6 HOH A 168 568 97 HOH HOH . H 6 HOH A 169 569 43 HOH HOH . H 6 HOH A 170 570 136 HOH HOH . H 6 HOH A 171 571 66 HOH HOH . H 6 HOH A 172 572 182 HOH HOH . H 6 HOH A 173 573 202 HOH HOH . H 6 HOH A 174 574 144 HOH HOH . H 6 HOH A 175 575 106 HOH HOH . H 6 HOH A 176 576 35 HOH HOH . H 6 HOH A 177 577 228 HOH HOH . H 6 HOH A 178 578 20 HOH HOH . H 6 HOH A 179 579 1 HOH HOH . H 6 HOH A 180 580 212 HOH HOH . H 6 HOH A 181 581 53 HOH HOH . H 6 HOH A 182 582 61 HOH HOH . H 6 HOH A 183 583 41 HOH HOH . H 6 HOH A 184 584 183 HOH HOH . H 6 HOH A 185 585 26 HOH HOH . H 6 HOH A 186 586 165 HOH HOH . H 6 HOH A 187 587 160 HOH HOH . H 6 HOH A 188 588 189 HOH HOH . H 6 HOH A 189 589 194 HOH HOH . H 6 HOH A 190 590 15 HOH HOH . H 6 HOH A 191 591 92 HOH HOH . H 6 HOH A 192 592 21 HOH HOH . H 6 HOH A 193 593 235 HOH HOH . H 6 HOH A 194 594 50 HOH HOH . H 6 HOH A 195 595 210 HOH HOH . H 6 HOH A 196 596 180 HOH HOH . H 6 HOH A 197 597 197 HOH HOH . H 6 HOH A 198 598 186 HOH HOH . H 6 HOH A 199 599 122 HOH HOH . H 6 HOH A 200 600 218 HOH HOH . H 6 HOH A 201 601 229 HOH HOH . H 6 HOH A 202 602 221 HOH HOH . H 6 HOH A 203 603 81 HOH HOH . H 6 HOH A 204 604 62 HOH HOH . H 6 HOH A 205 605 124 HOH HOH . H 6 HOH A 206 606 214 HOH HOH . H 6 HOH A 207 607 145 HOH HOH . H 6 HOH A 208 608 173 HOH HOH . H 6 HOH A 209 609 225 HOH HOH . H 6 HOH A 210 610 244 HOH HOH . H 6 HOH A 211 611 215 HOH HOH . H 6 HOH A 212 612 233 HOH HOH . H 6 HOH A 213 613 174 HOH HOH . H 6 HOH A 214 614 162 HOH HOH . H 6 HOH A 215 615 176 HOH HOH . H 6 HOH A 216 616 88 HOH HOH . H 6 HOH A 217 617 236 HOH HOH . H 6 HOH A 218 618 240 HOH HOH . H 6 HOH A 219 619 217 HOH HOH . H 6 HOH A 220 620 242 HOH HOH . H 6 HOH A 221 621 216 HOH HOH . H 6 HOH A 222 622 232 HOH HOH . H 6 HOH A 223 623 226 HOH HOH . H 6 HOH A 224 624 72 HOH HOH . H 6 HOH A 225 625 63 HOH HOH . H 6 HOH A 226 626 223 HOH HOH . H 6 HOH A 227 627 133 HOH HOH . H 6 HOH A 228 628 96 HOH HOH . H 6 HOH A 229 629 184 HOH HOH . H 6 HOH A 230 630 230 HOH HOH . H 6 HOH A 231 631 175 HOH HOH . H 6 HOH A 232 632 93 HOH HOH . H 6 HOH A 233 633 167 HOH HOH . H 6 HOH A 234 634 238 HOH HOH . H 6 HOH A 235 635 123 HOH HOH . H 6 HOH A 236 636 138 HOH HOH . H 6 HOH A 237 637 220 HOH HOH . H 6 HOH A 238 638 178 HOH HOH . H 6 HOH A 239 639 177 HOH HOH . H 6 HOH A 240 640 250 HOH HOH . H 6 HOH A 241 641 40 HOH HOH . H 6 HOH A 242 642 181 HOH HOH . H 6 HOH A 243 643 224 HOH HOH . H 6 HOH A 244 644 222 HOH HOH . H 6 HOH A 245 645 231 HOH HOH . H 6 HOH A 246 646 241 HOH HOH . H 6 HOH A 247 647 147 HOH HOH . H 6 HOH A 248 648 140 HOH HOH . H 6 HOH A 249 649 249 HOH HOH . H 6 HOH A 250 650 227 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . D 3 17.687 -3.111 95.972 1 32.63 ? C1 GOL 303 A 1 HETATM 2 O O1 GOL . . . D 3 18.55 -2.72 94.909 1 24.72 ? O1 GOL 303 A 1 HETATM 3 C C2 GOL . . . D 3 17.055 -4.475 95.779 1 36.06 ? C2 GOL 303 A 1 HETATM 4 O O2 GOL . . . D 3 16.431 -4.634 94.501 1 35.66 ? O2 GOL 303 A 1 HETATM 5 C C3 GOL . . . D 3 18.04 -5.593 96.008 1 36.55 ? C3 GOL 303 A 1 HETATM 6 O O3 GOL . . . D 3 17.401 -6.756 96.525 1 42.86 ? O3 GOL 303 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 283 _model_server_stats.encode_time_ms 13 _model_server_stats.element_count 6 #