data_6UFN # _model_server_result.job_id j53RcNymbYXGGJPtQPY36Q _model_server_result.datetime_utc '2024-11-14 16:26:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ufn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6UFN # _exptl.entry_id 6UFN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 204.31 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-[(3-aminopropyl)amino]heptane-2,2-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6UFN _cell.length_a 80.547 _cell.length_b 80.547 _cell.length_c 246.201 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UFN _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 172 A ASP 172 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc2 A OD2 ASP 172 A ASP 172 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.775 ? metalc ? metalc3 A OD1 ASP 174 A ASP 174 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.484 ? metalc ? metalc4 A OD2 ASP 174 A ASP 174 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc5 A O ASP 174 A ASP 174 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.703 ? metalc ? metalc6 A ND1 HIS 176 A HIS 176 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.172 ? metalc ? metalc7 A O HIS 176 A HIS 176 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.758 ? metalc ? metalc8 A O PHE 185 A PHE 185 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc9 A O ASP 188 A ASP 188 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.02 ? metalc ? metalc10 A O VAL 191 A VAL 191 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.701 ? metalc ? metalc11 A OG SER 195 A SER 195 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.868 ? metalc ? metalc12 A O TRP 196 A TRP 196 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.712 ? metalc ? metalc13 A O PHE 224 A PHE 224 1_555 I K K . A K 708 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc14 A OD2 ASP 267 A ASP 267 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.97 ? metalc ? metalc15 B O03 Q6M . A Q6M 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc16 B O04 Q6M . A Q6M 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc17 I K K . A K 708 1_555 J O HOH . A HOH 806 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.985 ? metalc ? metalc18 I K K . A K 708 1_555 J O HOH . A HOH 836 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.865 ? # _chem_comp.formula 'C10 H24 N2 O2' _chem_comp.formula_weight 204.31 _chem_comp.id Q6M _chem_comp.mon_nstd_flag . _chem_comp.name 7-[(3-aminopropyl)amino]heptane-2,2-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N14 C13 Q6M sing 281 n n C13 C12 Q6M sing 282 n n O04 C02 Q6M sing 283 n n C02 O03 Q6M sing 284 n n C02 C01 Q6M sing 285 n n C02 C05 Q6M sing 286 n n C12 C11 Q6M sing 287 n n C11 N10 Q6M sing 288 n n C06 C05 Q6M sing 289 n n C06 C07 Q6M sing 290 n n C08 C07 Q6M sing 291 n n C08 C09 Q6M sing 292 n n N10 C09 Q6M sing 293 n n C11 H1 Q6M sing 294 n n C11 H2 Q6M sing 295 n n C12 H3 Q6M sing 296 n n C12 H4 Q6M sing 297 n n C13 H5 Q6M sing 298 n n C13 H6 Q6M sing 299 n n C01 H7 Q6M sing 300 n n C01 H8 Q6M sing 301 n n C01 H9 Q6M sing 302 n n C05 H10 Q6M sing 303 n n C05 H11 Q6M sing 304 n n C06 H12 Q6M sing 305 n n C06 H13 Q6M sing 306 n n C07 H14 Q6M sing 307 n n C07 H15 Q6M sing 308 n n C08 H16 Q6M sing 309 n n C08 H17 Q6M sing 310 n n C09 H18 Q6M sing 311 n n C09 H19 Q6M sing 312 n n N10 H20 Q6M sing 313 n n N14 H22 Q6M sing 314 n n N14 H23 Q6M sing 315 n n O03 H25 Q6M sing 316 n n O04 H26 Q6M sing 317 n n # _atom_sites.entry_id 6UFN _atom_sites.fract_transf_matrix[1][1] 0.012415 _atom_sites.fract_transf_matrix[1][2] 0.007168 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014336 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004062 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q6M A 1 701 701 Q6M INH . C 3 ZN A 1 702 1 ZN ZN . D 4 PO4 A 1 703 1 PO4 PO4 . E 4 PO4 A 1 704 2 PO4 PO4 . F 4 PO4 A 1 705 3 PO4 PO4 . G 4 PO4 A 1 706 4 PO4 PO4 . H 5 K A 1 707 1 K K . I 5 K A 1 708 2 K K . J 6 HOH A 1 801 51 HOH HOH . J 6 HOH A 2 802 23 HOH HOH . J 6 HOH A 3 803 16 HOH HOH . J 6 HOH A 4 804 48 HOH HOH . J 6 HOH A 5 805 13 HOH HOH . J 6 HOH A 6 806 37 HOH HOH . J 6 HOH A 7 807 14 HOH HOH . J 6 HOH A 8 808 40 HOH HOH . J 6 HOH A 9 809 30 HOH HOH . J 6 HOH A 10 810 25 HOH HOH . J 6 HOH A 11 811 3 HOH HOH . J 6 HOH A 12 812 5 HOH HOH . J 6 HOH A 13 813 15 HOH HOH . J 6 HOH A 14 814 1 HOH HOH . J 6 HOH A 15 815 57 HOH HOH . J 6 HOH A 16 816 59 HOH HOH . J 6 HOH A 17 817 60 HOH HOH . J 6 HOH A 18 818 35 HOH HOH . J 6 HOH A 19 819 8 HOH HOH . J 6 HOH A 20 820 6 HOH HOH . J 6 HOH A 21 821 24 HOH HOH . J 6 HOH A 22 822 12 HOH HOH . J 6 HOH A 23 823 9 HOH HOH . J 6 HOH A 24 824 46 HOH HOH . J 6 HOH A 25 825 53 HOH HOH . J 6 HOH A 26 826 34 HOH HOH . J 6 HOH A 27 827 32 HOH HOH . J 6 HOH A 28 828 22 HOH HOH . J 6 HOH A 29 829 27 HOH HOH . J 6 HOH A 30 830 7 HOH HOH . J 6 HOH A 31 831 4 HOH HOH . J 6 HOH A 32 832 58 HOH HOH . J 6 HOH A 33 833 10 HOH HOH . J 6 HOH A 34 834 52 HOH HOH . J 6 HOH A 35 835 28 HOH HOH . J 6 HOH A 36 836 2 HOH HOH . J 6 HOH A 37 837 20 HOH HOH . J 6 HOH A 38 838 39 HOH HOH . J 6 HOH A 39 839 11 HOH HOH . J 6 HOH A 40 840 18 HOH HOH . J 6 HOH A 41 841 29 HOH HOH . J 6 HOH A 42 842 49 HOH HOH . J 6 HOH A 43 843 45 HOH HOH . J 6 HOH A 44 844 26 HOH HOH . J 6 HOH A 45 845 56 HOH HOH . J 6 HOH A 46 846 54 HOH HOH . J 6 HOH A 47 847 50 HOH HOH . J 6 HOH A 48 848 38 HOH HOH . J 6 HOH A 49 849 43 HOH HOH . J 6 HOH A 50 850 42 HOH HOH . J 6 HOH A 51 851 55 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C11 Q6M . . . B 2 27.641 40.028 34.449 1 52.79 ? C11 Q6M 701 A 1 HETATM 2 C C12 Q6M . . . B 2 28.859 40.966 34.277 1 49.26 ? C12 Q6M 701 A 1 HETATM 3 C C13 Q6M . . . B 2 29.051 41.394 32.797 1 66.78 ? C13 Q6M 701 A 1 HETATM 4 C C01 Q6M . . . B 2 18.016 40.924 34.713 1 37.34 ? C01 Q6M 701 A 1 HETATM 5 C C02 Q6M . . . B 2 19.328 40.299 34.217 1 35.46 ? C02 Q6M 701 A 1 HETATM 6 C C05 Q6M . . . B 2 20.548 40.758 35.041 1 42.1 ? C05 Q6M 701 A 1 HETATM 7 C C06 Q6M . . . B 2 21.917 40.392 34.453 1 45.82 ? C06 Q6M 701 A 1 HETATM 8 C C07 Q6M . . . B 2 23.021 40.226 35.518 1 37.19 ? C07 Q6M 701 A 1 HETATM 9 C C08 Q6M . . . B 2 24.443 40.41 34.965 1 38.19 ? C08 Q6M 701 A 1 HETATM 10 C C09 Q6M . . . B 2 25.542 39.673 35.774 1 42.67 ? C09 Q6M 701 A 1 HETATM 11 N N10 Q6M . . . B 2 26.862 40.352 35.676 1 41.58 ? N10 Q6M 701 A 1 HETATM 12 N N14 Q6M . . . B 2 30.437 41.821 32.556 1 59.67 ? N14 Q6M 701 A 1 HETATM 13 O O03 Q6M . . . B 2 19.269 38.904 34.298 1 37.48 ? O03 Q6M 701 A 1 HETATM 14 O O04 Q6M . . . B 2 19.565 40.637 32.887 1 43.05 ? O04 Q6M 701 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 328 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 14 #