data_6UFO # _model_server_result.job_id rfi5Tnumc1rMRd9W2wA1-g _model_server_result.datetime_utc '2024-11-15 22:25:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ufo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6UFO # _exptl.entry_id 6UFO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 234.336 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-[(3-aminopropyl)amino]-1-methoxyheptane-2,2-diol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6UFO _cell.length_a 80.85 _cell.length_b 80.85 _cell.length_c 247.025 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UFO _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 172 A ASP 172 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc2 A OD2 ASP 172 A ASP 172 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.838 ? metalc ? metalc3 A OD1 ASP 174 A ASP 174 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.499 ? metalc ? metalc4 A OD2 ASP 174 A ASP 174 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc5 A O ASP 174 A ASP 174 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.702 ? metalc ? metalc6 A ND1 HIS 176 A HIS 176 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.18 ? metalc ? metalc7 A O HIS 176 A HIS 176 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc8 A O PHE 185 A PHE 185 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.674 ? metalc ? metalc9 A O ASP 188 A ASP 188 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.079 ? metalc ? metalc10 A O VAL 191 A VAL 191 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? metalc ? metalc11 A OG SER 195 A SER 195 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.819 ? metalc ? metalc12 A O TRP 196 A TRP 196 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.734 ? metalc ? metalc13 A O PHE 224 A PHE 224 1_555 H K K . A K 707 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc14 A OD2 ASP 267 A ASP 267 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? metalc ? metalc15 B O05 Q6P . A Q6P 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? metalc ? metalc16 B O06 Q6P . A Q6P 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc17 H K K . A K 707 1_555 I O HOH . A HOH 816 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.872 ? metalc ? metalc18 H K K . A K 707 1_555 I O HOH . A HOH 840 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? # _chem_comp.formula 'C11 H26 N2 O3' _chem_comp.formula_weight 234.336 _chem_comp.id Q6P _chem_comp.mon_nstd_flag . _chem_comp.name 7-[(3-aminopropyl)amino]-1-methoxyheptane-2,2-diol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O05 C04 Q6P sing 281 n n C04 C03 Q6P sing 282 n n C04 O06 Q6P sing 283 n n C04 C07 Q6P sing 284 n n C03 O02 Q6P sing 285 n n C13 C14 Q6P sing 286 n n C13 N12 Q6P sing 287 n n C14 C15 Q6P sing 288 n n C15 N16 Q6P sing 289 n n C11 N12 Q6P sing 290 n n C11 C10 Q6P sing 291 n n C07 C08 Q6P sing 292 n n C09 C08 Q6P sing 293 n n C09 C10 Q6P sing 294 n n C01 O02 Q6P sing 295 n n C10 H1 Q6P sing 296 n n C10 H2 Q6P sing 297 n n C11 H3 Q6P sing 298 n n C11 H4 Q6P sing 299 n n C13 H5 Q6P sing 300 n n C13 H6 Q6P sing 301 n n C14 H7 Q6P sing 302 n n C14 H8 Q6P sing 303 n n C15 H9 Q6P sing 304 n n C15 H10 Q6P sing 305 n n C01 H11 Q6P sing 306 n n C01 H12 Q6P sing 307 n n C01 H13 Q6P sing 308 n n C03 H14 Q6P sing 309 n n C03 H15 Q6P sing 310 n n C07 H16 Q6P sing 311 n n C07 H17 Q6P sing 312 n n C08 H18 Q6P sing 313 n n C08 H19 Q6P sing 314 n n C09 H20 Q6P sing 315 n n C09 H21 Q6P sing 316 n n N12 H22 Q6P sing 317 n n N16 H24 Q6P sing 318 n n N16 H25 Q6P sing 319 n n O05 H27 Q6P sing 320 n n O06 H28 Q6P sing 321 n n # _atom_sites.entry_id 6UFO _atom_sites.fract_transf_matrix[1][1] 0.012369 _atom_sites.fract_transf_matrix[1][2] 0.007141 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014282 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q6P A 1 701 701 Q6P INH . C 3 ZN A 1 702 1 ZN ZN . D 4 PO4 A 1 703 1 PO4 PO4 . E 4 PO4 A 1 704 2 PO4 PO4 . F 4 PO4 A 1 705 3 PO4 PO4 . G 5 K A 1 706 1 K K . H 5 K A 1 707 2 K K . I 6 HOH A 1 801 21 HOH HOH . I 6 HOH A 2 802 28 HOH HOH . I 6 HOH A 3 803 50 HOH HOH . I 6 HOH A 4 804 54 HOH HOH . I 6 HOH A 5 805 19 HOH HOH . I 6 HOH A 6 806 20 HOH HOH . I 6 HOH A 7 807 17 HOH HOH . I 6 HOH A 8 808 37 HOH HOH . I 6 HOH A 9 809 30 HOH HOH . I 6 HOH A 10 810 46 HOH HOH . I 6 HOH A 11 811 38 HOH HOH . I 6 HOH A 12 812 7 HOH HOH . I 6 HOH A 13 813 55 HOH HOH . I 6 HOH A 14 814 8 HOH HOH . I 6 HOH A 15 815 58 HOH HOH . I 6 HOH A 16 816 34 HOH HOH . I 6 HOH A 17 817 40 HOH HOH . I 6 HOH A 18 818 47 HOH HOH . I 6 HOH A 19 819 51 HOH HOH . I 6 HOH A 20 820 15 HOH HOH . I 6 HOH A 21 821 31 HOH HOH . I 6 HOH A 22 822 27 HOH HOH . I 6 HOH A 23 823 5 HOH HOH . I 6 HOH A 24 824 4 HOH HOH . I 6 HOH A 25 825 9 HOH HOH . I 6 HOH A 26 826 29 HOH HOH . I 6 HOH A 27 827 56 HOH HOH . I 6 HOH A 28 828 6 HOH HOH . I 6 HOH A 29 829 16 HOH HOH . I 6 HOH A 30 830 53 HOH HOH . I 6 HOH A 31 831 60 HOH HOH . I 6 HOH A 32 832 22 HOH HOH . I 6 HOH A 33 833 11 HOH HOH . I 6 HOH A 34 834 23 HOH HOH . I 6 HOH A 35 835 59 HOH HOH . I 6 HOH A 36 836 1 HOH HOH . I 6 HOH A 37 837 14 HOH HOH . I 6 HOH A 38 838 36 HOH HOH . I 6 HOH A 39 839 41 HOH HOH . I 6 HOH A 40 840 3 HOH HOH . I 6 HOH A 41 841 49 HOH HOH . I 6 HOH A 42 842 43 HOH HOH . I 6 HOH A 43 843 24 HOH HOH . I 6 HOH A 44 844 12 HOH HOH . I 6 HOH A 45 845 57 HOH HOH . I 6 HOH A 46 846 13 HOH HOH . I 6 HOH A 47 847 25 HOH HOH . I 6 HOH A 48 848 44 HOH HOH . I 6 HOH A 49 849 52 HOH HOH . I 6 HOH A 50 850 2 HOH HOH . I 6 HOH A 51 851 42 HOH HOH . I 6 HOH A 52 852 35 HOH HOH . I 6 HOH A 53 853 39 HOH HOH . I 6 HOH A 54 854 26 HOH HOH . I 6 HOH A 55 855 45 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 Q6P . . . B 2 -24.641 -40.331 36.038 1 55.14 ? C10 Q6P 701 A 1 HETATM 2 C C11 Q6P . . . B 2 -25.875 -39.925 35.18 1 58.92 ? C11 Q6P 701 A 1 HETATM 3 C C13 Q6P . . . B 2 -28.134 -40.673 34.4 1 82.27 ? C13 Q6P 701 A 1 HETATM 4 C C14 Q6P . . . B 2 -29.179 -39.541 34.618 1 80.24 ? C14 Q6P 701 A 1 HETATM 5 C C15 Q6P . . . B 2 -30.557 -40.042 35.15 1 85.95 ? C15 Q6P 701 A 1 HETATM 6 C C01 Q6P . . . B 2 -16.852 -40.791 35.3 1 75.72 ? C01 Q6P 701 A 1 HETATM 7 C C03 Q6P . . . B 2 -18.714 -41.618 34.219 1 54.67 ? C03 Q6P 701 A 1 HETATM 8 C C04 Q6P . . . B 2 -19.899 -40.577 34.073 1 47.07 ? C04 Q6P 701 A 1 HETATM 9 C C07 Q6P . . . B 2 -20.857 -41.025 35.195 1 50.73 ? C07 Q6P 701 A 1 HETATM 10 C C08 Q6P . . . B 2 -22.122 -40.141 35.31 1 48.3 ? C08 Q6P 701 A 1 HETATM 11 C C09 Q6P . . . B 2 -23.461 -40.92 35.22 1 51.13 ? C09 Q6P 701 A 1 HETATM 12 N N12 Q6P . . . B 2 -27.105 -40.719 35.492 1 72.15 ? N12 Q6P 701 A 1 HETATM 13 N N16 Q6P . . . B 2 -30.93 -39.393 36.431 1 68.86 ? N16 Q6P 701 A 1 HETATM 14 O O02 Q6P . . . B 2 -18.097 -41.393 35.447 1 72.14 ? O02 Q6P 701 A 1 HETATM 15 O O05 Q6P . . . B 2 -20.444 -40.67 32.802 1 53.31 ? O05 Q6P 701 A 1 HETATM 16 O O06 Q6P . . . B 2 -19.473 -39.28 34.33 1 44.31 ? O06 Q6P 701 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 384 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 16 #