data_6UG4 # _model_server_result.job_id RyoGKKXlUFJzUBvYkV_CVw _model_server_result.datetime_utc '2024-11-13 04:38:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ug4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":202}' # _entry.id 6UG4 # _exptl.entry_id 6UG4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 88.062 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PYRUVIC ACID' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UG4 _cell.length_a 84.201 _cell.length_b 84.201 _cell.length_c 229.704 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UG4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,K,L,M,N,FA,GA 1 1 C,D,O,P,Q,R,S,T,U,V,HA,IA 2 1 E,F,W,X,Y,Z,AA,BA,CA,DA,EA,JA,KA 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 U N N ? 5 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 12 A PRO 12 1_555 A N MSE 13 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.322 ? covale ? covale2 A C MSE 13 A MSE 13 1_555 A N ASP 14 A ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale3 A C ALA 82 A ALA 82 1_555 A N MSE 83 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 A C MSE 83 A MSE 83 1_555 A N ASN 84 A ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 A C LYS 87 A LYS 87 1_555 A N MSE 88 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale6 A C MSE 88 A MSE 88 1_555 A N VAL 89 A VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale7 B C PRO 12 B PRO 12 1_555 B N MSE 13 B MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale8 B C MSE 13 B MSE 13 1_555 B N ASP 14 B ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale9 B C ALA 82 B ALA 82 1_555 B N MSE 83 B MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale10 B C MSE 83 B MSE 83 1_555 B N ASN 84 B ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale11 B C LYS 87 B LYS 87 1_555 B N MSE 88 B MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale12 B C MSE 88 B MSE 88 1_555 B N VAL 89 B VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale13 C C PRO 12 C PRO 12 1_555 C N MSE 13 C MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.315 ? covale ? covale14 C C MSE 13 C MSE 13 1_555 C N ASP 14 C ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.31 ? covale ? covale15 C C ALA 82 C ALA 82 1_555 C N MSE 83 C MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale16 C C MSE 83 C MSE 83 1_555 C N ASN 84 C ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale17 C C LYS 87 C LYS 87 1_555 C N MSE 88 C MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale18 C C MSE 88 C MSE 88 1_555 C N VAL 89 C VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale19 D C PRO 12 D PRO 12 1_555 D N MSE 13 D MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.313 ? covale ? covale20 D C MSE 13 D MSE 13 1_555 D N ASP 14 D ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale21 D C ALA 82 D ALA 82 1_555 D N MSE 83 D MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale22 D C MSE 83 D MSE 83 1_555 D N ASN 84 D ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale23 D C LYS 87 D LYS 87 1_555 D N MSE 88 D MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale24 D C MSE 88 D MSE 88 1_555 D N VAL 89 D VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale25 E C PRO 12 E PRO 12 1_555 E N MSE 13 E MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale26 E C MSE 13 E MSE 13 1_555 E N ASP 14 E ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale27 E C ALA 82 E ALA 82 1_555 E N MSE 83 E MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale28 E C MSE 83 E MSE 83 1_555 E N ASN 84 E ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale29 E C LYS 87 E LYS 87 1_555 E N MSE 88 E MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale30 E C MSE 88 E MSE 88 1_555 E N VAL 89 E VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale31 F C PRO 12 F PRO 12 1_555 F N MSE 13 F MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.316 ? covale ? covale32 F C MSE 13 F MSE 13 1_555 F N ASP 14 F ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale33 F C ALA 82 F ALA 82 1_555 F N MSE 83 F MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale34 F C MSE 83 F MSE 83 1_555 F N ASN 84 F ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale35 F C LYS 87 F LYS 87 1_555 F N MSE 88 F MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.32 ? covale ? covale36 F C MSE 88 F MSE 88 1_555 F N VAL 89 F VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.318 ? # _chem_comp.formula 'C3 H4 O3' _chem_comp.formula_weight 88.062 _chem_comp.id PYR _chem_comp.mon_nstd_flag . _chem_comp.name 'PYRUVIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C O PYR doub 315 n n C OXT PYR sing 316 n n C CA PYR sing 317 n n OXT HXT PYR sing 318 n n CA O3 PYR doub 319 n n CA CB PYR sing 320 n n CB HB1 PYR sing 321 n n CB HB2 PYR sing 322 n n CB HB3 PYR sing 323 n n # _atom_sites.entry_id 6UG4 _atom_sites.fract_transf_matrix[1][1] 0.011876 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011876 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004353 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 CFF A 1 201 200 CFF CFF . H 2 CFF A 1 202 201 CFF CFF . I 2 CFF A 1 203 202 CFF CFF . J 3 GOL A 1 204 1 GOL GOL . K 4 SO4 A 1 205 1 SO4 SO4 . L 4 SO4 A 1 206 4 SO4 SO4 . M 3 GOL B 1 201 8 GOL GOL . N 4 SO4 B 1 202 3 SO4 SO4 . O 2 CFF C 1 201 200 CFF CFF . P 2 CFF C 1 202 201 CFF CFF . Q 2 CFF C 1 203 202 CFF CFF . R 3 GOL C 1 204 7 GOL GOL . S 3 GOL C 1 205 16 GOL GOL . T 4 SO4 D 1 201 5 SO4 SO4 . U 5 PYR D 1 202 1 PYR PYR . V 5 PYR D 1 203 2 PYR PYR . W 2 CFF E 1 201 200 CFF CFF . X 3 GOL E 1 202 2 GOL GOL . Y 3 GOL E 1 203 3 GOL GOL . Z 3 GOL E 1 204 5 GOL GOL . AA 2 CFF F 1 201 201 CFF CFF . BA 2 CFF F 1 202 202 CFF CFF . CA 3 GOL F 1 203 4 GOL GOL . DA 3 GOL F 1 204 9 GOL GOL . EA 3 GOL F 1 205 18 GOL GOL . FA 6 HOH A 1 301 120 HOH HOH . FA 6 HOH A 2 302 2 HOH HOH . FA 6 HOH A 3 303 46 HOH HOH . FA 6 HOH A 4 304 70 HOH HOH . FA 6 HOH A 5 305 97 HOH HOH . FA 6 HOH A 6 306 38 HOH HOH . FA 6 HOH A 7 307 12 HOH HOH . FA 6 HOH A 8 308 191 HOH HOH . FA 6 HOH A 9 309 69 HOH HOH . FA 6 HOH A 10 310 188 HOH HOH . FA 6 HOH A 11 311 121 HOH HOH . FA 6 HOH A 12 312 72 HOH HOH . FA 6 HOH A 13 313 96 HOH HOH . FA 6 HOH A 14 314 18 HOH HOH . FA 6 HOH A 15 315 190 HOH HOH . FA 6 HOH A 16 316 25 HOH HOH . FA 6 HOH A 17 317 162 HOH HOH . FA 6 HOH A 18 318 95 HOH HOH . FA 6 HOH A 19 319 51 HOH HOH . FA 6 HOH A 20 320 48 HOH HOH . FA 6 HOH A 21 321 80 HOH HOH . FA 6 HOH A 22 322 99 HOH HOH . FA 6 HOH A 23 323 112 HOH HOH . GA 6 HOH B 1 301 155 HOH HOH . GA 6 HOH B 2 302 49 HOH HOH . GA 6 HOH B 3 303 124 HOH HOH . GA 6 HOH B 4 304 209 HOH HOH . GA 6 HOH B 5 305 88 HOH HOH . GA 6 HOH B 6 306 73 HOH HOH . GA 6 HOH B 7 307 118 HOH HOH . GA 6 HOH B 8 308 187 HOH HOH . GA 6 HOH B 9 309 220 HOH HOH . GA 6 HOH B 10 310 66 HOH HOH . GA 6 HOH B 11 311 58 HOH HOH . GA 6 HOH B 12 312 35 HOH HOH . GA 6 HOH B 13 313 103 HOH HOH . GA 6 HOH B 14 314 116 HOH HOH . GA 6 HOH B 15 315 149 HOH HOH . GA 6 HOH B 16 316 13 HOH HOH . GA 6 HOH B 17 317 10 HOH HOH . GA 6 HOH B 18 318 108 HOH HOH . GA 6 HOH B 19 319 138 HOH HOH . HA 6 HOH C 1 301 122 HOH HOH . HA 6 HOH C 2 302 218 HOH HOH . HA 6 HOH C 3 303 198 HOH HOH . HA 6 HOH C 4 304 193 HOH HOH . HA 6 HOH C 5 305 156 HOH HOH . HA 6 HOH C 6 306 4 HOH HOH . HA 6 HOH C 7 307 223 HOH HOH . HA 6 HOH C 8 308 219 HOH HOH . HA 6 HOH C 9 309 36 HOH HOH . HA 6 HOH C 10 310 61 HOH HOH . HA 6 HOH C 11 311 79 HOH HOH . HA 6 HOH C 12 312 169 HOH HOH . HA 6 HOH C 13 313 178 HOH HOH . HA 6 HOH C 14 314 226 HOH HOH . HA 6 HOH C 15 315 31 HOH HOH . HA 6 HOH C 16 316 7 HOH HOH . HA 6 HOH C 17 317 47 HOH HOH . HA 6 HOH C 18 318 57 HOH HOH . HA 6 HOH C 19 319 128 HOH HOH . HA 6 HOH C 20 320 41 HOH HOH . HA 6 HOH C 21 321 229 HOH HOH . IA 6 HOH D 1 301 224 HOH HOH . IA 6 HOH D 2 302 222 HOH HOH . IA 6 HOH D 3 303 221 HOH HOH . IA 6 HOH D 4 304 110 HOH HOH . IA 6 HOH D 5 305 28 HOH HOH . IA 6 HOH D 6 306 157 HOH HOH . IA 6 HOH D 7 307 106 HOH HOH . IA 6 HOH D 8 308 227 HOH HOH . IA 6 HOH D 9 309 177 HOH HOH . IA 6 HOH D 10 310 182 HOH HOH . IA 6 HOH D 11 311 186 HOH HOH . IA 6 HOH D 12 312 9 HOH HOH . IA 6 HOH D 13 313 30 HOH HOH . IA 6 HOH D 14 314 176 HOH HOH . IA 6 HOH D 15 315 83 HOH HOH . IA 6 HOH D 16 316 50 HOH HOH . IA 6 HOH D 17 317 181 HOH HOH . IA 6 HOH D 18 318 183 HOH HOH . IA 6 HOH D 19 319 225 HOH HOH . IA 6 HOH D 20 320 210 HOH HOH . IA 6 HOH D 21 321 215 HOH HOH . IA 6 HOH D 22 322 228 HOH HOH . JA 6 HOH E 1 301 195 HOH HOH . JA 6 HOH E 2 302 5 HOH HOH . JA 6 HOH E 3 303 158 HOH HOH . JA 6 HOH E 4 304 129 HOH HOH . JA 6 HOH E 5 305 43 HOH HOH . JA 6 HOH E 6 306 45 HOH HOH . JA 6 HOH E 7 307 200 HOH HOH . JA 6 HOH E 8 308 196 HOH HOH . JA 6 HOH E 9 309 17 HOH HOH . JA 6 HOH E 10 310 231 HOH HOH . JA 6 HOH E 11 311 134 HOH HOH . JA 6 HOH E 12 312 15 HOH HOH . JA 6 HOH E 13 313 33 HOH HOH . JA 6 HOH E 14 314 140 HOH HOH . JA 6 HOH E 15 315 20 HOH HOH . JA 6 HOH E 16 316 8 HOH HOH . JA 6 HOH E 17 317 78 HOH HOH . JA 6 HOH E 18 318 53 HOH HOH . JA 6 HOH E 19 319 144 HOH HOH . JA 6 HOH E 20 320 76 HOH HOH . JA 6 HOH E 21 321 89 HOH HOH . JA 6 HOH E 22 322 232 HOH HOH . JA 6 HOH E 23 323 217 HOH HOH . JA 6 HOH E 24 324 82 HOH HOH . JA 6 HOH E 25 325 202 HOH HOH . JA 6 HOH E 26 326 197 HOH HOH . JA 6 HOH E 27 327 21 HOH HOH . JA 6 HOH E 28 328 175 HOH HOH . KA 6 HOH F 1 301 204 HOH HOH . KA 6 HOH F 2 302 205 HOH HOH . KA 6 HOH F 3 303 39 HOH HOH . KA 6 HOH F 4 304 206 HOH HOH . KA 6 HOH F 5 305 64 HOH HOH . KA 6 HOH F 6 306 163 HOH HOH . KA 6 HOH F 7 307 130 HOH HOH . KA 6 HOH F 8 308 98 HOH HOH . KA 6 HOH F 9 309 54 HOH HOH . KA 6 HOH F 10 310 62 HOH HOH . KA 6 HOH F 11 311 102 HOH HOH . KA 6 HOH F 12 312 84 HOH HOH . KA 6 HOH F 13 313 63 HOH HOH . KA 6 HOH F 14 314 87 HOH HOH . KA 6 HOH F 15 315 34 HOH HOH . KA 6 HOH F 16 316 230 HOH HOH . KA 6 HOH F 17 317 65 HOH HOH . KA 6 HOH F 18 318 59 HOH HOH . KA 6 HOH F 19 319 208 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C PYR . . . U 5 18.069 30.671 -23.341 1 72.62 ? C PYR 202 D 1 HETATM 2 O O PYR . . . U 5 17.321 30.119 -24.15 1 65.73 ? O PYR 202 D 1 HETATM 3 O OXT PYR . . . U 5 18.889 30.001 -22.737 1 58.69 ? OXT PYR 202 D 1 HETATM 4 C CA PYR . . . U 5 18.01 32.108 -23.081 1 65.78 ? CA PYR 202 D 1 HETATM 5 O O3 PYR . . . U 5 18.567 32.559 -22.122 1 51.42 ? O3 PYR 202 D 1 HETATM 6 C CB PYR . . . U 5 17.281 33.022 -23.986 1 56.62 ? CB PYR 202 D 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #