data_6UG5 # _model_server_result.job_id wl2E9TElMC5BKoqnaY2MFw _model_server_result.datetime_utc '2025-07-27 03:17:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ug5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":201}' # _entry.id 6UG5 # _exptl.entry_id 6UG5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 110.56 _cell.angle_gamma 90 _cell.entry_id 6UG5 _cell.length_a 74.012 _cell.length_b 87.421 _cell.length_c 74.041 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UG5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA dimeric 2 author_and_software_defined_assembly 1 PISA dimeric 2 author_and_software_defined_assembly 2 PISA dimeric 2 author_and_software_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,G,H,I,J,O,P 1 1 C,E,K,M,Q,S 2 1 D,F,L,N,R,T 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 L N N ? 2 M N N ? 2 N N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C PRO 12 A PRO 12 1_555 A N MSE 13 A MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C MSE 13 A MSE 13 1_555 A N ASP 14 A ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale3 A C ALA 82 A ALA 82 1_555 A N MSE 83 A MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 A C MSE 83 A MSE 83 1_555 A N ASN 84 A ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale5 A C LYS 87 A LYS 87 1_555 A N MSE 88 A MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale6 A C MSE 88 A MSE 88 1_555 A N VAL 89 A VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale7 B C PRO 12 C PRO 12 1_555 B N MSE 13 C MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale8 B C MSE 13 C MSE 13 1_555 B N ASP 14 C ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale9 B C ALA 82 C ALA 82 1_555 B N MSE 83 C MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 ? covale ? covale10 B C MSE 83 C MSE 83 1_555 B N ASN 84 C ASN 84 1_555 ? ? ? ? A ? ? ? ? ? ? ? 1.327 ? covale ? covale11 B C MSE 83 C MSE 83 1_555 B N ASN 84 C ASN 84 1_555 ? ? ? ? B ? ? ? ? ? ? ? 1.328 ? covale ? covale12 B C LYS 87 C LYS 87 1_555 B N MSE 88 C MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale13 B C MSE 88 C MSE 88 1_555 B N VAL 89 C VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale14 C C PRO 12 E PRO 12 1_555 C N MSE 13 E MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale15 C C MSE 13 E MSE 13 1_555 C N ASP 14 E ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale16 C C ALA 82 E ALA 82 1_555 C N MSE 83 E MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 C C MSE 83 E MSE 83 1_555 C N ASN 84 E ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale18 C C LYS 87 E LYS 87 1_555 C N MSE 88 E MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale19 C C MSE 88 E MSE 88 1_555 C N VAL 89 E VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale20 D C PRO 12 G PRO 12 1_555 D N MSE 13 G MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.325 ? covale ? covale21 D C MSE 13 G MSE 13 1_555 D N ASP 14 G ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale22 D C ALA 82 G ALA 82 1_555 D N MSE 83 G MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale23 D C MSE 83 G MSE 83 1_555 D N ASN 84 G ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale24 D C LYS 87 G LYS 87 1_555 D N MSE 88 G MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? covale ? covale25 D C MSE 88 G MSE 88 1_555 D N VAL 89 G VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale26 E C PRO 12 I PRO 12 1_555 E N MSE 13 I MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale27 E C MSE 13 I MSE 13 1_555 E N ASP 14 I ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale28 E C ALA 82 I ALA 82 1_555 E N MSE 83 I MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? covale ? covale29 E C MSE 83 I MSE 83 1_555 E N ASN 84 I ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.327 ? covale ? covale30 E C LYS 87 I LYS 87 1_555 E N MSE 88 I MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale31 E C MSE 88 I MSE 88 1_555 E N VAL 89 I VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale32 F C PRO 12 K PRO 12 1_555 F N MSE 13 K MSE 13 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.323 ? covale ? covale33 F C MSE 13 K MSE 13 1_555 F N ASP 14 K ASP 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale34 F C ALA 82 K ALA 82 1_555 F N MSE 83 K MSE 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale35 F C MSE 83 K MSE 83 1_555 F N ASN 84 K ASN 84 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? covale ? covale36 F C LYS 87 K LYS 87 1_555 F N MSE 88 K MSE 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? covale ? covale37 F C MSE 88 K MSE 88 1_555 F N VAL 89 K VAL 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 6UG5 _atom_sites.fract_transf_matrix[1][1] 0.013511 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005069 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011439 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014425 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 GOL A 1 201 103 GOL GOL . H 2 GOL C 1 201 103 GOL GOL . I 2 GOL C 1 202 1 GOL GOL . J 2 GOL C 1 203 1 GOL GOL . K 2 GOL E 1 201 103 GOL GOL . L 2 GOL G 1 201 103 GOL GOL . M 2 GOL I 1 201 103 GOL GOL . N 2 GOL K 1 201 103 GOL GOL . O 3 HOH A 1 301 37 HOH HOH . O 3 HOH A 2 302 39 HOH HOH . O 3 HOH A 3 303 56 HOH HOH . O 3 HOH A 4 304 31 HOH HOH . O 3 HOH A 5 305 7 HOH HOH . O 3 HOH A 6 306 28 HOH HOH . O 3 HOH A 7 307 32 HOH HOH . O 3 HOH A 8 308 67 HOH HOH . O 3 HOH A 9 309 23 HOH HOH . O 3 HOH A 10 310 12 HOH HOH . O 3 HOH A 11 311 20 HOH HOH . O 3 HOH A 12 312 10 HOH HOH . O 3 HOH A 13 313 18 HOH HOH . O 3 HOH A 14 314 68 HOH HOH . O 3 HOH A 15 315 21 HOH HOH . P 3 HOH C 1 301 3 HOH HOH . P 3 HOH C 2 302 36 HOH HOH . P 3 HOH C 3 303 54 HOH HOH . P 3 HOH C 4 304 25 HOH HOH . P 3 HOH C 5 305 40 HOH HOH . P 3 HOH C 6 306 26 HOH HOH . P 3 HOH C 7 307 2 HOH HOH . P 3 HOH C 8 308 9 HOH HOH . P 3 HOH C 9 309 24 HOH HOH . P 3 HOH C 10 310 4 HOH HOH . P 3 HOH C 11 311 30 HOH HOH . P 3 HOH C 12 312 71 HOH HOH . P 3 HOH C 13 313 19 HOH HOH . P 3 HOH C 14 314 22 HOH HOH . Q 3 HOH E 1 301 35 HOH HOH . Q 3 HOH E 2 302 55 HOH HOH . Q 3 HOH E 3 303 5 HOH HOH . Q 3 HOH E 4 304 52 HOH HOH . Q 3 HOH E 5 305 13 HOH HOH . Q 3 HOH E 6 306 69 HOH HOH . R 3 HOH G 1 301 42 HOH HOH . R 3 HOH G 2 302 29 HOH HOH . R 3 HOH G 3 303 65 HOH HOH . R 3 HOH G 4 304 33 HOH HOH . R 3 HOH G 5 305 1 HOH HOH . R 3 HOH G 6 306 8 HOH HOH . R 3 HOH G 7 307 27 HOH HOH . R 3 HOH G 8 308 46 HOH HOH . R 3 HOH G 9 309 43 HOH HOH . R 3 HOH G 10 310 60 HOH HOH . R 3 HOH G 11 311 47 HOH HOH . R 3 HOH G 12 312 48 HOH HOH . R 3 HOH G 13 313 50 HOH HOH . R 3 HOH G 14 314 64 HOH HOH . S 3 HOH I 1 301 59 HOH HOH . S 3 HOH I 2 302 53 HOH HOH . S 3 HOH I 3 303 17 HOH HOH . S 3 HOH I 4 304 16 HOH HOH . S 3 HOH I 5 305 6 HOH HOH . S 3 HOH I 6 306 66 HOH HOH . S 3 HOH I 7 307 62 HOH HOH . S 3 HOH I 8 308 34 HOH HOH . S 3 HOH I 9 309 61 HOH HOH . S 3 HOH I 10 310 51 HOH HOH . T 3 HOH K 1 301 45 HOH HOH . T 3 HOH K 2 302 44 HOH HOH . T 3 HOH K 3 303 14 HOH HOH . T 3 HOH K 4 304 57 HOH HOH . T 3 HOH K 5 305 58 HOH HOH . T 3 HOH K 6 306 15 HOH HOH . T 3 HOH K 7 307 11 HOH HOH . T 3 HOH K 8 308 63 HOH HOH . T 3 HOH K 9 309 38 HOH HOH . T 3 HOH K 10 310 41 HOH HOH . T 3 HOH K 11 311 70 HOH HOH . T 3 HOH K 12 312 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . L 2 4.078 7.599 -22.539 1 53.05 ? C1 GOL 201 G 1 HETATM 2 O O1 GOL . . . L 2 5.318 7.058 -22.119 1 42.88 ? O1 GOL 201 G 1 HETATM 3 C C2 GOL . . . L 2 3.036 7.481 -21.418 1 57.93 ? C2 GOL 201 G 1 HETATM 4 O O2 GOL . . . L 2 2.099 8.54 -21.527 1 61.58 ? O2 GOL 201 G 1 HETATM 5 C C3 GOL . . . L 2 2.344 6.104 -21.43 1 43.77 ? C3 GOL 201 G 1 HETATM 6 O O3 GOL . . . L 2 0.939 6.228 -21.589 1 39.57 ? O3 GOL 201 G 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 377 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #