data_6UG6 # _model_server_result.job_id ytR1xyXB2XFnEgxX6VSYQg _model_server_result.datetime_utc '2024-11-22 09:25:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ug6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":101}' # _entry.id 6UG6 # _exptl.entry_id 6UG6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4R)-2-METHYLPENTANE-2,4-DIOL _entity.pdbx_number_of_molecules 8 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 109.499 _cell.angle_beta 108.863 _cell.angle_gamma 107.911 _cell.entry_id 6UG6 _cell.length_a 28.53 _cell.length_b 29.96 _cell.length_c 30.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 2 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P -1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,U 1 1 B,G,H,I,J,V 2 1 C,K,L,M,N,W 3 1 D,O,P,Q,R,S,T,X 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 H N N ? 2 K N N ? 2 M N N ? 2 O N N ? 2 P N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N PRO 1 A PRO 1 1_555 A C ASP 12 A ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 sing covale ? covale2 A C ARG 2 A ARG 2 1_555 A N DVA 3 A DVA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C DVA 3 A DVA 3 1_555 A N ASP 4 A ASP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C ARG 6 A ARG 6 1_555 A N DVA 7 A DVA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C DVA 7 A DVA 7 1_555 A N ASP 8 A ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C ARG 10 A ARG 10 1_555 A N DVA 11 A DVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C DVA 11 A DVA 11 1_555 A N ASP 12 A ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale8 B N PRO 1 B PRO 1 1_555 B C ASP 12 B ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 sing covale ? covale9 B C ARG 2 B ARG 2 1_555 B N DVA 3 B DVA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 B C DVA 3 B DVA 3 1_555 B N ASP 4 B ASP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 B C ARG 6 B ARG 6 1_555 B N DVA 7 B DVA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 B C DVA 7 B DVA 7 1_555 B N ASP 8 B ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C ARG 10 B ARG 10 1_555 B N DVA 11 B DVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 B C DVA 11 B DVA 11 1_555 B N ASP 12 B ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 C N PRO 1 C PRO 1 1_555 C C ASP 12 C ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 sing covale ? covale16 C C ARG 2 C ARG 2 1_555 C N DVA 3 C DVA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 C C DVA 3 C DVA 3 1_555 C N ASP 4 C ASP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale18 C C ARG 6 C ARG 6 1_555 C N DVA 7 C DVA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale19 C C DVA 7 C DVA 7 1_555 C N ASP 8 C ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale20 C C ARG 10 C ARG 10 1_555 C N DVA 11 C DVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 C C DVA 11 C DVA 11 1_555 C N ASP 12 C ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale22 D N PRO 1 D PRO 1 1_555 D C ASP 12 D ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 sing covale ? covale23 D C ARG 2 D ARG 2 1_555 D N DVA 3 D DVA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale24 D C DVA 3 D DVA 3 1_555 D N ASP 4 D ASP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale25 D C ARG 6 D ARG 6 1_555 D N DVA 7 D DVA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale26 D C DVA 7 D DVA 7 1_555 D N ASP 8 D ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale27 D C ARG 10 D ARG 10 1_555 D N DVA 11 D DVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale28 D C DVA 11 D DVA 11 1_555 D N ASP 12 D ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A O ASP 8 A ASP 8 1_555 F NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc2 F NA NA . A NA 102 1_555 U O HOH . A HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc3 F NA NA . A NA 102 1_555 U O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc4 F NA NA . A NA 102 1_555 U O HOH . A HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc5 F NA NA . A NA 102 1_555 W O HOH . C HOH 201 2_666 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc6 F NA NA . A NA 102 1_555 W O HOH . C HOH 210 2_666 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc7 U O HOH . A HOH 212 2_666 N NA NA . C NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc8 C O ASP 4 C ASP 4 1_555 N NA NA . C NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc9 N NA NA . C NA 104 1_555 W O HOH . C HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc10 N NA NA . C NA 104 1_555 W O HOH . C HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc11 N NA NA . C NA 104 1_555 W O HOH . C HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc12 N NA NA . C NA 104 1_555 W O HOH . C HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MRD _chem_comp.mon_nstd_flag . _chem_comp.name (4R)-2-METHYLPENTANE-2,4-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MRD sing 83 n n C1 H1C1 MRD sing 84 n n C1 H1C2 MRD sing 85 n n C1 H1C3 MRD sing 86 n n C2 O2 MRD sing 87 n n C2 CM MRD sing 88 n n C2 C3 MRD sing 89 n n O2 H2 MRD sing 90 n n CM HMC1 MRD sing 91 n n CM HMC2 MRD sing 92 n n CM HMC3 MRD sing 93 n n C3 C4 MRD sing 94 n n C3 H3C1 MRD sing 95 n n C3 H3C2 MRD sing 96 n n C4 O4 MRD sing 97 n n C4 C5 MRD sing 98 n n C4 H4 MRD sing 99 n n O4 HA MRD sing 100 n n C5 H5C1 MRD sing 101 n n C5 H5C2 MRD sing 102 n n C5 H5C3 MRD sing 103 n n # _atom_sites.entry_id 6UG6 _atom_sites.fract_transf_matrix[1][1] 0.035051 _atom_sites.fract_transf_matrix[1][2] 0.011329 _atom_sites.fract_transf_matrix[1][3] 0.019878 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.035078 _atom_sites.fract_transf_matrix[2][3] 0.019251 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.040048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MRD A 1 101 13 MRD MRD . F 3 NA A 1 102 14 NA NA . G 2 MRD B 1 101 13 MRD MRD . H 2 MRD B 1 102 14 MRD MRD . I 4 SO4 B 1 103 15 SO4 SO4 . J 5 PO4 B 1 104 16 PO4 PO4 . K 2 MRD C 1 101 13 MRD MRD . L 6 MPD C 1 102 14 MPD MRD . M 2 MRD C 1 103 15 MRD MRD . N 3 NA C 1 104 17 NA NA . O 2 MRD D 1 101 13 MRD MRD . P 2 MRD D 1 102 14 MRD MRD . Q 2 MRD D 1 103 15 MRD MRD . R 6 MPD D 1 104 16 MPD MRD . S 5 PO4 D 1 105 17 PO4 PO4 . T 6 MPD D 1 106 18 MPD MRD . U 7 HOH A 1 201 22 HOH HOH . U 7 HOH A 2 202 21 HOH HOH . U 7 HOH A 3 203 18 HOH HOH . U 7 HOH A 4 204 19 HOH HOH . U 7 HOH A 5 205 17 HOH HOH . U 7 HOH A 6 206 15 HOH HOH . U 7 HOH A 7 207 23 HOH HOH . U 7 HOH A 8 208 20 HOH HOH . U 7 HOH A 9 209 25 HOH HOH . U 7 HOH A 10 210 22 HOH HOH . U 7 HOH A 11 211 24 HOH HOH . U 7 HOH A 12 212 16 HOH HOH . V 7 HOH B 1 201 17 HOH HOH . V 7 HOH B 2 202 18 HOH HOH . V 7 HOH B 3 203 24 HOH HOH . V 7 HOH B 4 204 19 HOH HOH . V 7 HOH B 5 205 16 HOH HOH . V 7 HOH B 6 206 23 HOH HOH . V 7 HOH B 7 207 21 HOH HOH . V 7 HOH B 8 208 25 HOH HOH . V 7 HOH B 9 209 20 HOH HOH . V 7 HOH B 10 210 26 HOH HOH . W 7 HOH C 1 201 27 HOH HOH . W 7 HOH C 2 202 25 HOH HOH . W 7 HOH C 3 203 26 HOH HOH . W 7 HOH C 4 204 24 HOH HOH . W 7 HOH C 5 205 23 HOH HOH . W 7 HOH C 6 206 19 HOH HOH . W 7 HOH C 7 207 18 HOH HOH . W 7 HOH C 8 208 22 HOH HOH . W 7 HOH C 9 209 20 HOH HOH . W 7 HOH C 10 210 21 HOH HOH . X 7 HOH D 1 201 25 HOH HOH . X 7 HOH D 2 202 21 HOH HOH . X 7 HOH D 3 203 26 HOH HOH . X 7 HOH D 4 204 20 HOH HOH . X 7 HOH D 5 205 27 HOH HOH . X 7 HOH D 6 206 19 HOH HOH . X 7 HOH D 7 207 24 HOH HOH . X 7 HOH D 8 208 22 HOH HOH . X 7 HOH D 9 209 23 HOH HOH . X 7 HOH D 10 210 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MRD . . . O 2 8.693 -1.68 12.104 1 9.54 ? C1 MRD 101 D 1 HETATM 2 C C2 MRD . . . O 2 9.773 -0.9 12.843 1 7.59 ? C2 MRD 101 D 1 HETATM 3 O O2 MRD . . . O 2 11.032 -1.443 12.415 1 7.51 ? O2 MRD 101 D 1 HETATM 4 C CM MRD . . . O 2 9.673 -1.091 14.346 1 9.84 ? CM MRD 101 D 1 HETATM 5 C C3 MRD . . . O 2 9.721 0.593 12.514 1 7.5 ? C3 MRD 101 D 1 HETATM 6 C C4 MRD . . . O 2 9.639 0.999 11.085 1 6.99 ? C4 MRD 101 D 1 HETATM 7 O O4 MRD . . . O 2 10.827 0.614 10.399 1 7.81 ? O4 MRD 101 D 1 HETATM 8 C C5 MRD . . . O 2 9.398 2.459 10.938 1 7.85 ? C5 MRD 101 D 1 HETATM 9 H H1C1 MRD . . . O 2 7.937 -1.096 11.928 1 9.28 ? H1C1 MRD 101 D 1 HETATM 10 H H1C2 MRD . . . O 2 8.404 -2.427 12.653 1 9.1 ? H1C2 MRD 101 D 1 HETATM 11 H H1C3 MRD . . . O 2 9.051 -2.013 11.264 1 9.21 ? H1C3 MRD 101 D 1 HETATM 12 H HMC1 MRD . . . O 2 10.153 -0.374 14.794 1 9.62 ? HMC1 MRD 101 D 1 HETATM 13 H HMC2 MRD . . . O 2 10.065 -1.947 14.588 1 9.44 ? HMC2 MRD 101 D 1 HETATM 14 H HMC3 MRD . . . O 2 8.738 -1.073 14.61 1 9.06 ? HMC3 MRD 101 D 1 HETATM 15 H H3C1 MRD . . . O 2 10.519 1.011 12.9 1 7.35 ? H3C1 MRD 101 D 1 HETATM 16 H H3C2 MRD . . . O 2 8.944 0.97 12.978 1 7.4 ? H3C2 MRD 101 D 1 HETATM 17 H H4 MRD . . . O 2 8.883 0.52 10.66 1 7.18 ? H4 MRD 101 D 1 HETATM 18 H HA MRD . . . O 2 11.496 1.021 10.725 1 7.92 ? HA MRD 101 D 1 HETATM 19 H H5C1 MRD . . . O 2 9.959 2.814 10.225 1 7.8 ? H5C1 MRD 101 D 1 HETATM 20 H H5C2 MRD . . . O 2 9.612 2.915 11.772 1 7.7 ? H5C2 MRD 101 D 1 HETATM 21 H H5C3 MRD . . . O 2 8.463 2.616 10.718 1 7.69 ? H5C3 MRD 101 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 21 #