data_6UG6 # _model_server_result.job_id IGi02JJwpoQIGLJuKx2iMQ _model_server_result.datetime_utc '2024-11-22 09:06:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ug6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"R","auth_seq_id":104}' # _entry.id 6UG6 # _exptl.entry_id 6UG6 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 109.499 _cell.angle_beta 108.863 _cell.angle_gamma 107.911 _cell.entry_id 6UG6 _cell.length_a 28.53 _cell.length_b 29.96 _cell.length_c 30.1 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UG6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 2 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P -1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,U 1 1 B,G,H,I,J,V 2 1 C,K,L,M,N,W 3 1 D,O,P,Q,R,S,T,X 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 L N N ? 6 R N N ? 6 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A N PRO 1 A PRO 1 1_555 A C ASP 12 A ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 sing covale ? covale2 A C ARG 2 A ARG 2 1_555 A N DVA 3 A DVA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale3 A C DVA 3 A DVA 3 1_555 A N ASP 4 A ASP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale4 A C ARG 6 A ARG 6 1_555 A N DVA 7 A DVA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale5 A C DVA 7 A DVA 7 1_555 A N ASP 8 A ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale6 A C ARG 10 A ARG 10 1_555 A N DVA 11 A DVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale7 A C DVA 11 A DVA 11 1_555 A N ASP 12 A ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.342 ? covale ? covale8 B N PRO 1 B PRO 1 1_555 B C ASP 12 B ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 sing covale ? covale9 B C ARG 2 B ARG 2 1_555 B N DVA 3 B DVA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale10 B C DVA 3 B DVA 3 1_555 B N ASP 4 B ASP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale11 B C ARG 6 B ARG 6 1_555 B N DVA 7 B DVA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 B C DVA 7 B DVA 7 1_555 B N ASP 8 B ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale13 B C ARG 10 B ARG 10 1_555 B N DVA 11 B DVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale14 B C DVA 11 B DVA 11 1_555 B N ASP 12 B ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale15 C N PRO 1 C PRO 1 1_555 C C ASP 12 C ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 sing covale ? covale16 C C ARG 2 C ARG 2 1_555 C N DVA 3 C DVA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale17 C C DVA 3 C DVA 3 1_555 C N ASP 4 C ASP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale18 C C ARG 6 C ARG 6 1_555 C N DVA 7 C DVA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale19 C C DVA 7 C DVA 7 1_555 C N ASP 8 C ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale20 C C ARG 10 C ARG 10 1_555 C N DVA 11 C DVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale21 C C DVA 11 C DVA 11 1_555 C N ASP 12 C ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale22 D N PRO 1 D PRO 1 1_555 D C ASP 12 D ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.337 sing covale ? covale23 D C ARG 2 D ARG 2 1_555 D N DVA 3 D DVA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale24 D C DVA 3 D DVA 3 1_555 D N ASP 4 D ASP 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale25 D C ARG 6 D ARG 6 1_555 D N DVA 7 D DVA 7 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale26 D C DVA 7 D DVA 7 1_555 D N ASP 8 D ASP 8 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? covale ? covale27 D C ARG 10 D ARG 10 1_555 D N DVA 11 D DVA 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale28 D C DVA 11 D DVA 11 1_555 D N ASP 12 D ASP 12 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? metalc ? metalc1 A O ASP 8 A ASP 8 1_555 F NA NA . A NA 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc2 F NA NA . A NA 102 1_555 U O HOH . A HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.556 ? metalc ? metalc3 F NA NA . A NA 102 1_555 U O HOH . A HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc4 F NA NA . A NA 102 1_555 U O HOH . A HOH 212 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? metalc ? metalc5 F NA NA . A NA 102 1_555 W O HOH . C HOH 201 2_666 ? ? ? ? ? ? ? ? ? ? ? ? 2.716 ? metalc ? metalc6 F NA NA . A NA 102 1_555 W O HOH . C HOH 210 2_666 ? ? ? ? ? ? ? ? ? ? ? ? 3.097 ? metalc ? metalc7 U O HOH . A HOH 212 2_666 N NA NA . C NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.066 ? metalc ? metalc8 C O ASP 4 C ASP 4 1_555 N NA NA . C NA 104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.282 ? metalc ? metalc9 N NA NA . C NA 104 1_555 W O HOH . C HOH 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.693 ? metalc ? metalc10 N NA NA . C NA 104 1_555 W O HOH . C HOH 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc11 N NA NA . C NA 104 1_555 W O HOH . C HOH 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.071 ? metalc ? metalc12 N NA NA . C NA 104 1_555 W O HOH . C HOH 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 62 n n C1 H11 MPD sing 63 n n C1 H12 MPD sing 64 n n C1 H13 MPD sing 65 n n C2 O2 MPD sing 66 n n C2 CM MPD sing 67 n n C2 C3 MPD sing 68 n n O2 HO2 MPD sing 69 n n CM HM1 MPD sing 70 n n CM HM2 MPD sing 71 n n CM HM3 MPD sing 72 n n C3 C4 MPD sing 73 n n C3 H31 MPD sing 74 n n C3 H32 MPD sing 75 n n C4 O4 MPD sing 76 n n C4 C5 MPD sing 77 n n C4 H4 MPD sing 78 n n O4 HO4 MPD sing 79 n n C5 H51 MPD sing 80 n n C5 H52 MPD sing 81 n n C5 H53 MPD sing 82 n n # _atom_sites.entry_id 6UG6 _atom_sites.fract_transf_matrix[1][1] 0.035051 _atom_sites.fract_transf_matrix[1][2] 0.011329 _atom_sites.fract_transf_matrix[1][3] 0.019878 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.035078 _atom_sites.fract_transf_matrix[2][3] 0.019251 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.040048 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 MRD A 1 101 13 MRD MRD . F 3 NA A 1 102 14 NA NA . G 2 MRD B 1 101 13 MRD MRD . H 2 MRD B 1 102 14 MRD MRD . I 4 SO4 B 1 103 15 SO4 SO4 . J 5 PO4 B 1 104 16 PO4 PO4 . K 2 MRD C 1 101 13 MRD MRD . L 6 MPD C 1 102 14 MPD MRD . M 2 MRD C 1 103 15 MRD MRD . N 3 NA C 1 104 17 NA NA . O 2 MRD D 1 101 13 MRD MRD . P 2 MRD D 1 102 14 MRD MRD . Q 2 MRD D 1 103 15 MRD MRD . R 6 MPD D 1 104 16 MPD MRD . S 5 PO4 D 1 105 17 PO4 PO4 . T 6 MPD D 1 106 18 MPD MRD . U 7 HOH A 1 201 22 HOH HOH . U 7 HOH A 2 202 21 HOH HOH . U 7 HOH A 3 203 18 HOH HOH . U 7 HOH A 4 204 19 HOH HOH . U 7 HOH A 5 205 17 HOH HOH . U 7 HOH A 6 206 15 HOH HOH . U 7 HOH A 7 207 23 HOH HOH . U 7 HOH A 8 208 20 HOH HOH . U 7 HOH A 9 209 25 HOH HOH . U 7 HOH A 10 210 22 HOH HOH . U 7 HOH A 11 211 24 HOH HOH . U 7 HOH A 12 212 16 HOH HOH . V 7 HOH B 1 201 17 HOH HOH . V 7 HOH B 2 202 18 HOH HOH . V 7 HOH B 3 203 24 HOH HOH . V 7 HOH B 4 204 19 HOH HOH . V 7 HOH B 5 205 16 HOH HOH . V 7 HOH B 6 206 23 HOH HOH . V 7 HOH B 7 207 21 HOH HOH . V 7 HOH B 8 208 25 HOH HOH . V 7 HOH B 9 209 20 HOH HOH . V 7 HOH B 10 210 26 HOH HOH . W 7 HOH C 1 201 27 HOH HOH . W 7 HOH C 2 202 25 HOH HOH . W 7 HOH C 3 203 26 HOH HOH . W 7 HOH C 4 204 24 HOH HOH . W 7 HOH C 5 205 23 HOH HOH . W 7 HOH C 6 206 19 HOH HOH . W 7 HOH C 7 207 18 HOH HOH . W 7 HOH C 8 208 22 HOH HOH . W 7 HOH C 9 209 20 HOH HOH . W 7 HOH C 10 210 21 HOH HOH . X 7 HOH D 1 201 25 HOH HOH . X 7 HOH D 2 202 21 HOH HOH . X 7 HOH D 3 203 26 HOH HOH . X 7 HOH D 4 204 20 HOH HOH . X 7 HOH D 5 205 27 HOH HOH . X 7 HOH D 6 206 19 HOH HOH . X 7 HOH D 7 207 24 HOH HOH . X 7 HOH D 8 208 22 HOH HOH . X 7 HOH D 9 209 23 HOH HOH . X 7 HOH D 10 210 28 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . R 6 18.762 -12.792 0.104 0.5 42.67 ? C1 MPD 104 D 1 HETATM 2 C C2 MPD . . . R 6 18.272 -14.187 0.458 0.5 38.26 ? C2 MPD 104 D 1 HETATM 3 O O2 MPD . . . R 6 16.891 -14.268 0.071 0.5 43.17 ? O2 MPD 104 D 1 HETATM 4 C CM MPD . . . R 6 18.347 -14.43 1.957 0.5 40.82 ? CM MPD 104 D 1 HETATM 5 C C3 MPD . . . R 6 19.038 -15.252 -0.327 0.5 34.73 ? C3 MPD 104 D 1 HETATM 6 C C4 MPD . . . R 6 18.664 -15.219 -1.78 0.5 25.64 ? C4 MPD 104 D 1 HETATM 7 O O4 MPD . . . R 6 17.333 -14.724 -1.895 0.5 24.77 ? O4 MPD 104 D 1 HETATM 8 C C5 MPD . . . R 6 19.59 -14.369 -2.595 0.5 21.17 ? C5 MPD 104 D 1 HETATM 9 H H11 MPD . . . R 6 19.664 -12.85 -0.254 0.5 42.38 ? H11 MPD 104 D 1 HETATM 10 H H12 MPD . . . R 6 18.762 -12.239 0.903 0.5 41.88 ? H12 MPD 104 D 1 HETATM 11 H H13 MPD . . . R 6 18.171 -12.404 -0.563 0.5 34.23 ? H13 MPD 104 D 1 HETATM 12 H HM1 MPD . . . R 6 18.835 -15.253 2.125 0.5 41.06 ? HM1 MPD 104 D 1 HETATM 13 H HM2 MPD . . . R 6 17.446 -14.505 2.315 0.5 41.1 ? HM2 MPD 104 D 1 HETATM 14 H HM3 MPD . . . R 6 18.806 -13.685 2.38 0.5 41.24 ? HM3 MPD 104 D 1 HETATM 15 H H31 MPD . . . R 6 18.831 -16.137 0.043 0.5 34.07 ? H31 MPD 104 D 1 HETATM 16 H H32 MPD . . . R 6 20.001 -15.09 -0.235 0.5 33.94 ? H32 MPD 104 D 1 HETATM 17 H H4 MPD . . . R 6 18.679 -16.145 -2.134 0.5 25.44 ? H4 MPD 104 D 1 HETATM 18 H HO4 MPD . . . R 6 17.015 -14.572 -1.123 0.5 26 ? HO4 MPD 104 D 1 HETATM 19 H H51 MPD . . . R 6 19.085 -13.659 -3.032 0.5 21.79 ? H51 MPD 104 D 1 HETATM 20 H H52 MPD . . . R 6 20.027 -14.916 -3.272 0.5 21.32 ? H52 MPD 104 D 1 HETATM 21 H H53 MPD . . . R 6 20.266 -13.973 -2.016 0.5 21.55 ? H53 MPD 104 D 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 291 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 21 #