data_6UH3 # _model_server_result.job_id vnr0KfVMSOVrobsCIhNDMQ _model_server_result.datetime_utc '2024-10-11 07:17:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uh3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"Q","auth_seq_id":301}' # _entry.id 6UH3 # _exptl.entry_id 6UH3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.04 _cell.angle_gamma 90 _cell.entry_id 6UH3 _cell.length_a 49.449 _cell.length_b 102.139 _cell.length_c 56.77 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UH3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 Q N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A NZ LYS 239 A LYS 241 1_555 C C15 RET . A RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.347 ? covale ? covale2 B NZ LYS 239 B LYS 241 1_555 Q C15 RET . B RET 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.344 ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 365 n n C1 C6 RET sing 366 n n C1 C16 RET sing 367 n n C1 C17 RET sing 368 n n C2 C3 RET sing 369 n n C2 H21 RET sing 370 n n C2 H22 RET sing 371 n n C3 C4 RET sing 372 n n C3 H31 RET sing 373 n n C3 H32 RET sing 374 n n C4 C5 RET sing 375 n n C4 H41 RET sing 376 n n C4 H42 RET sing 377 n n C5 C6 RET doub 378 n n C5 C18 RET sing 379 n n C6 C7 RET sing 380 n n C7 C8 RET doub 381 e n C7 H7 RET sing 382 n n C8 C9 RET sing 383 n n C8 H8 RET sing 384 n n C9 C10 RET doub 385 e n C9 C19 RET sing 386 n n C10 C11 RET sing 387 n n C10 H10 RET sing 388 n n C11 C12 RET doub 389 e n C11 H11 RET sing 390 n n C12 C13 RET sing 391 n n C12 H12 RET sing 392 n n C13 C14 RET doub 393 e n C13 C20 RET sing 394 n n C14 C15 RET sing 395 n n C14 H14 RET sing 396 n n C15 O1 RET doub 397 n n C15 H15 RET sing 398 n n C16 H161 RET sing 399 n n C16 H162 RET sing 400 n n C16 H163 RET sing 401 n n C17 H171 RET sing 402 n n C17 H172 RET sing 403 n n C17 H173 RET sing 404 n n C18 H181 RET sing 405 n n C18 H182 RET sing 406 n n C18 H183 RET sing 407 n n C19 H191 RET sing 408 n n C19 H192 RET sing 409 n n C19 H193 RET sing 410 n n C20 H201 RET sing 411 n n C20 H202 RET sing 412 n n C20 H203 RET sing 413 n n # _atom_sites.entry_id 6UH3 _atom_sites.fract_transf_matrix[1][1] 0.020223 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001428 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009791 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017659 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 RET A 1 301 301 RET RET . D 3 PGE A 1 302 302 PGE PGE . E 3 PGE A 1 303 309 PGE PGE . F 3 PGE A 1 304 314 PGE PGE . G 3 PGE A 1 305 315 PGE PGE . H 3 PGE A 1 306 317 PGE PGE . I 3 PGE A 1 307 318 PGE PGE . J 3 PGE A 1 308 319 PGE PGE . K 3 PGE A 1 309 320 PGE PGE . L 3 PGE A 1 310 322 PGE PGE . M 3 PGE A 1 311 325 PGE PGE . N 3 PGE A 1 312 326 PGE PGE . O 4 PLM A 1 313 327 PLM PLM . P 4 PLM A 1 314 328 PLM PLM . Q 2 RET B 1 301 301 RET RET . R 3 PGE B 1 302 301 PGE PGE . S 3 PGE B 1 303 304 PGE PGE . T 5 PEG B 1 304 305 PEG PEG . U 3 PGE B 1 305 306 PGE PGE . V 3 PGE B 1 306 307 PGE PGE . W 5 PEG B 1 307 308 PEG PEG . X 3 PGE B 1 308 310 PGE PGE . Y 3 PGE B 1 309 311 PGE PGE . Z 3 PGE B 1 310 312 PGE PGE . AA 3 PGE B 1 311 313 PGE PGE . BA 3 PGE B 1 312 321 PGE PGE . CA 3 PGE B 1 313 323 PGE PGE . DA 4 PLM B 1 314 330 PLM PLM . EA 4 PLM B 1 315 332 PLM PLM . FA 6 HOH A 1 401 31 HOH HOH . FA 6 HOH A 2 402 34 HOH HOH . FA 6 HOH A 3 403 6 HOH HOH . FA 6 HOH A 4 404 5 HOH HOH . FA 6 HOH A 5 405 7 HOH HOH . FA 6 HOH A 6 406 22 HOH HOH . FA 6 HOH A 7 407 11 HOH HOH . FA 6 HOH A 8 408 30 HOH HOH . FA 6 HOH A 9 409 35 HOH HOH . FA 6 HOH A 10 410 28 HOH HOH . FA 6 HOH A 11 411 3 HOH HOH . FA 6 HOH A 12 412 15 HOH HOH . FA 6 HOH A 13 413 18 HOH HOH . FA 6 HOH A 14 414 8 HOH HOH . FA 6 HOH A 15 415 21 HOH HOH . FA 6 HOH A 16 416 27 HOH HOH . FA 6 HOH A 17 417 32 HOH HOH . GA 6 HOH B 1 401 19 HOH HOH . GA 6 HOH B 2 402 10 HOH HOH . GA 6 HOH B 3 403 2 HOH HOH . GA 6 HOH B 4 404 13 HOH HOH . GA 6 HOH B 5 405 4 HOH HOH . GA 6 HOH B 6 406 14 HOH HOH . GA 6 HOH B 7 407 23 HOH HOH . GA 6 HOH B 8 408 24 HOH HOH . GA 6 HOH B 9 409 1 HOH HOH . GA 6 HOH B 10 410 33 HOH HOH . GA 6 HOH B 11 411 36 HOH HOH . GA 6 HOH B 12 412 17 HOH HOH . GA 6 HOH B 13 413 25 HOH HOH . GA 6 HOH B 14 414 26 HOH HOH . GA 6 HOH B 15 415 20 HOH HOH . GA 6 HOH B 16 416 12 HOH HOH . GA 6 HOH B 17 417 9 HOH HOH . GA 6 HOH B 18 418 29 HOH HOH . GA 6 HOH B 19 419 16 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . Q 2 63.095 46.709 64.922 1 25.45 ? C1 RET 301 B 1 HETATM 2 C C2 RET . . . Q 2 63.337 45.577 65.908 1 21.95 ? C2 RET 301 B 1 HETATM 3 C C3 RET . . . Q 2 63.761 44.316 65.209 1 18.5 ? C3 RET 301 B 1 HETATM 4 C C4 RET . . . Q 2 65.072 44.568 64.536 1 20.63 ? C4 RET 301 B 1 HETATM 5 C C5 RET . . . Q 2 64.911 45.682 63.517 1 20.22 ? C5 RET 301 B 1 HETATM 6 C C6 RET . . . Q 2 63.939 46.581 63.623 1 24.02 ? C6 RET 301 B 1 HETATM 7 C C7 RET . . . Q 2 63.757 47.534 62.435 1 20.64 ? C7 RET 301 B 1 HETATM 8 C C8 RET . . . Q 2 62.907 48.565 62.429 1 21.54 ? C8 RET 301 B 1 HETATM 9 C C9 RET . . . Q 2 62.799 49.495 61.228 1 24.14 ? C9 RET 301 B 1 HETATM 10 C C10 RET . . . Q 2 61.876 50.441 61.228 1 23.55 ? C10 RET 301 B 1 HETATM 11 C C11 RET . . . Q 2 61.722 51.447 60.076 1 21.84 ? C11 RET 301 B 1 HETATM 12 C C12 RET . . . Q 2 60.859 52.433 60.203 1 21.46 ? C12 RET 301 B 1 HETATM 13 C C13 RET . . . Q 2 60.558 53.461 59.113 1 21.19 ? C13 RET 301 B 1 HETATM 14 C C14 RET . . . Q 2 59.674 54.425 59.36 1 22.6 ? C14 RET 301 B 1 HETATM 15 C C15 RET . . . Q 2 59.239 55.396 58.261 1 21.54 ? C15 RET 301 B 1 HETATM 16 C C16 RET . . . Q 2 63.491 47.996 65.627 1 22.1 ? C16 RET 301 B 1 HETATM 17 C C17 RET . . . Q 2 61.6 46.686 64.645 1 21.22 ? C17 RET 301 B 1 HETATM 18 C C18 RET . . . Q 2 65.682 45.559 62.208 1 21.18 ? C18 RET 301 B 1 HETATM 19 C C19 RET . . . Q 2 63.752 49.293 60.047 1 25.5 ? C19 RET 301 B 1 HETATM 20 C C20 RET . . . Q 2 61.327 53.488 57.792 1 21.58 ? C20 RET 301 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 315 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #