data_6UHH
#
_model_server_result.job_id            8khuA8MFhoK_ebo3Uxnujg 
_model_server_result.datetime_utc      '2024-12-23 00:55:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uhh 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":1103}' 
#
_entry.id    6UHH 
#
_exptl.entry_id    6UHH 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    13 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6UHH 
_cell.length_a            62.043 
_cell.length_b            61.855 
_cell.length_c            279.128 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UHH 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
PISA monomeric 1 author_and_software_defined_assembly 1 
PISA monomeric 1 author_and_software_defined_assembly 2 
PISA monomeric 1 author_and_software_defined_assembly 3 
PISA monomeric 1 author_and_software_defined_assembly 4 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,E,F,G,H,V 1 1 
B,I,J,K,W 2 1 
C,L,M,N,O,P,X 3 1 
D,Q,R,S,T,U,Y 4 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 J N N 
? 3 L N N 
? 3 M N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 8 A CYS 852 1_555 C SG CYS 8 C CYS 852 4_445 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf2 B SG CYS 8 B CYS 852 1_555 D SG CYS 8 D CYS 852 3_544 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? 
covale ? covale1 A C GLY 37 A GLY 881 1_555 A N MSE 38 A MSE 882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C MSE 38 A MSE 882 1_555 A N ASN 39 A ASN 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 A C GLN 77 A GLN 921 1_555 A N MSE 78 A MSE 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale4 A C MSE 78 A MSE 922 1_555 A N SER 79 A SER 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale5 A C TYR 113 A TYR 957 1_555 A N MSE 114 A MSE 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale6 A C MSE 114 A MSE 958 1_555 A N MSE 115 A MSE 959 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale7 A C MSE 115 A MSE 959 1_555 A N SER 116 A SER 960 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
covale ? covale8 B C GLY 37 B GLY 881 1_555 B N MSE 38 B MSE 882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale9 B C MSE 38 B MSE 882 1_555 B N ASN 39 B ASN 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale10 B C GLN 77 B GLN 921 1_555 B N MSE 78 B MSE 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 B C MSE 78 B MSE 922 1_555 B N SER 79 B SER 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale12 B C TYR 113 B TYR 957 1_555 B N MSE 114 B MSE 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale13 B C MSE 114 B MSE 958 1_555 B N MSE 115 B MSE 959 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.328 ? 
covale ? covale14 B C MSE 115 B MSE 959 1_555 B N SER 116 B SER 960 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? 
covale ? covale15 C C GLY 37 C GLY 881 1_555 C N MSE 38 C MSE 882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale16 C C MSE 38 C MSE 882 1_555 C N ASN 39 C ASN 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale17 C C GLN 77 C GLN 921 1_555 C N MSE 78 C MSE 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale18 C C MSE 78 C MSE 922 1_555 C N SER 79 C SER 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale19 C C TYR 113 C TYR 957 1_555 C N MSE 114 C MSE 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale20 C C MSE 114 C MSE 958 1_555 C N MSE 115 C MSE 959 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.326 ? 
covale ? covale21 C C MSE 115 C MSE 959 1_555 C N SER 116 C SER 960 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.338 ? 
covale ? covale22 D C GLY 37 D GLY 881 1_555 D N MSE 38 D MSE 882 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? 
covale ? covale23 D C MSE 38 D MSE 882 1_555 D N ASN 39 D ASN 883 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale24 D C GLN 77 D GLN 921 1_555 D N MSE 78 D MSE 922 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.33 ? 
covale ? covale25 D C MSE 78 D MSE 922 1_555 D N SER 79 D SER 923 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? 
covale ? covale26 D C TYR 113 D TYR 957 1_555 D N MSE 114 D MSE 958 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale27 D C MSE 114 D MSE 958 1_555 D N MSE 115 D MSE 959 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale28 D C MSE 115 D MSE 959 1_555 D N SER 116 D SER 960 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 178 n n 
C1 C2 GOL sing 179 n n 
C1 H11 GOL sing 180 n n 
C1 H12 GOL sing 181 n n 
O1 HO1 GOL sing 182 n n 
C2 O2 GOL sing 183 n n 
C2 C3 GOL sing 184 n n 
C2 H2 GOL sing 185 n n 
O2 HO2 GOL sing 186 n n 
C3 O3 GOL sing 187 n n 
C3 H31 GOL sing 188 n n 
C3 H32 GOL sing 189 n n 
O3 HO3 GOL sing 190 n n 
#
_atom_sites.entry_id                     6UHH 
_atom_sites.fract_transf_matrix[1][1]    0.016118 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016167 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003583 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 ATP A 1 1101 301 ATP ATP . 
F 3 GOL A 1 1102 1 GOL GOL . 
G 3 GOL A 1 1103 11 GOL GOL . 
H 4 TRS A 1 1104 1 TRS TRS . 
I 2 ATP B 1 1101 301 ATP ATP . 
J 3 GOL B 1 1102 8 GOL GOL . 
K 5 PEG B 1 1103 1 PEG PEG . 
L 3 GOL C 1 1101 3 GOL GOL . 
M 3 GOL C 1 1102 6 GOL GOL . 
N 3 GOL C 1 1103 7 GOL GOL . 
O 3 GOL C 1 1104 12 GOL GOL . 
P 3 GOL C 1 1105 14 GOL GOL . 
Q 3 GOL D 1 1101 4 GOL GOL . 
R 3 GOL D 1 1102 5 GOL GOL . 
S 3 GOL D 1 1103 9 GOL GOL . 
T 3 GOL D 1 1104 10 GOL GOL . 
U 3 GOL D 1 1105 13 GOL GOL . 
V 6 HOH A 1 1201 56 HOH HOH . 
V 6 HOH A 2 1202 95 HOH HOH . 
V 6 HOH A 3 1203 153 HOH HOH . 
V 6 HOH A 4 1204 32 HOH HOH . 
V 6 HOH A 5 1205 104 HOH HOH . 
V 6 HOH A 6 1206 105 HOH HOH . 
V 6 HOH A 7 1207 145 HOH HOH . 
V 6 HOH A 8 1208 100 HOH HOH . 
V 6 HOH A 9 1209 131 HOH HOH . 
V 6 HOH A 10 1210 29 HOH HOH . 
V 6 HOH A 11 1211 97 HOH HOH . 
V 6 HOH A 12 1212 137 HOH HOH . 
V 6 HOH A 13 1213 141 HOH HOH . 
V 6 HOH A 14 1214 132 HOH HOH . 
V 6 HOH A 15 1215 5 HOH HOH . 
V 6 HOH A 16 1216 4 HOH HOH . 
V 6 HOH A 17 1217 30 HOH HOH . 
V 6 HOH A 18 1218 73 HOH HOH . 
V 6 HOH A 19 1219 133 HOH HOH . 
V 6 HOH A 20 1220 140 HOH HOH . 
V 6 HOH A 21 1221 33 HOH HOH . 
V 6 HOH A 22 1222 88 HOH HOH . 
W 6 HOH B 1 1201 63 HOH HOH . 
W 6 HOH B 2 1202 57 HOH HOH . 
W 6 HOH B 3 1203 146 HOH HOH . 
W 6 HOH B 4 1204 148 HOH HOH . 
W 6 HOH B 5 1205 147 HOH HOH . 
W 6 HOH B 6 1206 1 HOH HOH . 
W 6 HOH B 7 1207 3 HOH HOH . 
W 6 HOH B 8 1208 76 HOH HOH . 
W 6 HOH B 9 1209 77 HOH HOH . 
W 6 HOH B 10 1210 78 HOH HOH . 
X 6 HOH C 1 1201 142 HOH HOH . 
X 6 HOH C 2 1202 82 HOH HOH . 
X 6 HOH C 3 1203 109 HOH HOH . 
X 6 HOH C 4 1204 80 HOH HOH . 
X 6 HOH C 5 1205 8 HOH HOH . 
X 6 HOH C 6 1206 53 HOH HOH . 
X 6 HOH C 7 1207 167 HOH HOH . 
X 6 HOH C 8 1208 136 HOH HOH . 
X 6 HOH C 9 1209 61 HOH HOH . 
X 6 HOH C 10 1210 110 HOH HOH . 
X 6 HOH C 11 1211 112 HOH HOH . 
X 6 HOH C 12 1212 152 HOH HOH . 
X 6 HOH C 13 1213 143 HOH HOH . 
X 6 HOH C 14 1214 54 HOH HOH . 
X 6 HOH C 15 1215 150 HOH HOH . 
X 6 HOH C 16 1216 162 HOH HOH . 
X 6 HOH C 17 1217 81 HOH HOH . 
X 6 HOH C 18 1218 9 HOH HOH . 
X 6 HOH C 19 1219 50 HOH HOH . 
X 6 HOH C 20 1220 139 HOH HOH . 
X 6 HOH C 21 1221 168 HOH HOH . 
X 6 HOH C 22 1222 116 HOH HOH . 
X 6 HOH C 23 1223 52 HOH HOH . 
X 6 HOH C 24 1224 48 HOH HOH . 
X 6 HOH C 25 1225 149 HOH HOH . 
X 6 HOH C 26 1226 67 HOH HOH . 
X 6 HOH C 27 1227 49 HOH HOH . 
X 6 HOH C 28 1228 68 HOH HOH . 
X 6 HOH C 29 1229 160 HOH HOH . 
X 6 HOH C 30 1230 51 HOH HOH . 
X 6 HOH C 31 1231 108 HOH HOH . 
X 6 HOH C 32 1232 62 HOH HOH . 
X 6 HOH C 33 1233 117 HOH HOH . 
X 6 HOH C 34 1234 106 HOH HOH . 
X 6 HOH C 35 1235 161 HOH HOH . 
X 6 HOH C 36 1236 89 HOH HOH . 
X 6 HOH C 37 1237 87 HOH HOH . 
X 6 HOH C 38 1238 90 HOH HOH . 
X 6 HOH C 39 1239 118 HOH HOH . 
X 6 HOH C 40 1240 151 HOH HOH . 
Y 6 HOH D 1 1201 135 HOH HOH . 
Y 6 HOH D 2 1202 128 HOH HOH . 
Y 6 HOH D 3 1203 16 HOH HOH . 
Y 6 HOH D 4 1204 20 HOH HOH . 
Y 6 HOH D 5 1205 123 HOH HOH . 
Y 6 HOH D 6 1206 126 HOH HOH . 
Y 6 HOH D 7 1207 124 HOH HOH . 
Y 6 HOH D 8 1208 154 HOH HOH . 
Y 6 HOH D 9 1209 12 HOH HOH . 
Y 6 HOH D 10 1210 21 HOH HOH . 
Y 6 HOH D 11 1211 119 HOH HOH . 
Y 6 HOH D 12 1212 144 HOH HOH . 
Y 6 HOH D 13 1213 125 HOH HOH . 
Y 6 HOH D 14 1214 121 HOH HOH . 
Y 6 HOH D 15 1215 158 HOH HOH . 
Y 6 HOH D 16 1216 60 HOH HOH . 
Y 6 HOH D 17 1217 59 HOH HOH . 
Y 6 HOH D 18 1218 130 HOH HOH . 
Y 6 HOH D 19 1219 129 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . S 3 38.872 34.135 -53.138 1 80.44 ? C1 GOL 1103 D 1 
HETATM 2 O O1 GOL . . . S 3 38.274 32.872 -53.322 1 81.32 ? O1 GOL 1103 D 1 
HETATM 3 C C2 GOL . . . S 3 40.376 34.016 -53.348 1 79.22 ? C2 GOL 1103 D 1 
HETATM 4 O O2 GOL . . . S 3 40.855 35.167 -54.007 1 79.32 ? O2 GOL 1103 D 1 
HETATM 5 C C3 GOL . . . S 3 41.058 33.889 -51.992 1 68.35 ? C3 GOL 1103 D 1 
HETATM 6 O O3 GOL . . . S 3 42.42 34.228 -52.119 1 63.63 ? O3 GOL 1103 D 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    16 
_model_server_stats.query_time_ms           324 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           6 
#