data_6UHV # _model_server_result.job_id NZyih1uhXIj8HovRrqYfug _model_server_result.datetime_utc '2024-11-15 22:52:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uhv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6UHV # _exptl.entry_id 6UHV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 203.282 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[(3-aminopropyl)amino]-N-hydroxyhexanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6UHV _cell.length_a 80.525 _cell.length_b 80.525 _cell.length_c 245.874 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UHV _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 543 A CYS 543 1_555 A SG CYS 543 A CYS 543 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.994 ? metalc ? metalc1 A O ASP 172 A ASP 172 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc2 A OD2 ASP 172 A ASP 172 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.86 ? metalc ? metalc3 A OD1 ASP 174 A ASP 174 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.475 ? metalc ? metalc4 A OD2 ASP 174 A ASP 174 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc5 A O ASP 174 A ASP 174 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.717 ? metalc ? metalc6 A ND1 HIS 176 A HIS 176 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.233 ? metalc ? metalc7 A O HIS 176 A HIS 176 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc8 A O PHE 185 A PHE 185 1_555 E K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.728 ? metalc ? metalc9 A O VAL 191 A VAL 191 1_555 E K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.723 ? metalc ? metalc10 A OG SER 195 A SER 195 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.098 ? metalc ? metalc11 A O TRP 196 A TRP 196 1_555 D K K . A K 703 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.732 ? metalc ? metalc12 A O PHE 224 A PHE 224 1_555 E K K . A K 704 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.879 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? metalc ? metalc14 B O12 XS6 . A XS6 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc15 B O14 XS6 . A XS6 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? metalc ? metalc16 E K K . A K 704 1_555 H O HOH . A HOH 812 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.854 ? metalc ? metalc17 E K K . A K 704 1_555 H O HOH . A HOH 863 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.895 ? # _chem_comp.formula 'C9 H21 N3 O2' _chem_comp.formula_weight 203.282 _chem_comp.id XS6 _chem_comp.mon_nstd_flag . _chem_comp.name 6-[(3-aminopropyl)amino]-N-hydroxyhexanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O14 N13 XS6 sing 380 n n O12 C11 XS6 doub 381 n n N13 C11 XS6 sing 382 n n N1 C2 XS6 sing 383 n n C11 C10 XS6 sing 384 n n C3 C2 XS6 sing 385 n n C3 C4 XS6 sing 386 n n C9 C10 XS6 sing 387 n n C9 C8 XS6 sing 388 n n C4 N5 XS6 sing 389 n n N5 C6 XS6 sing 390 n n C7 C8 XS6 sing 391 n n C7 C6 XS6 sing 392 n n C2 H1 XS6 sing 393 n n C2 H2 XS6 sing 394 n n C3 H3 XS6 sing 395 n n C3 H4 XS6 sing 396 n n C4 H5 XS6 sing 397 n n C4 H6 XS6 sing 398 n n C6 H7 XS6 sing 399 n n C6 H8 XS6 sing 400 n n C7 H9 XS6 sing 401 n n C7 H10 XS6 sing 402 n n C8 H11 XS6 sing 403 n n C8 H12 XS6 sing 404 n n C9 H13 XS6 sing 405 n n C9 H14 XS6 sing 406 n n C10 H15 XS6 sing 407 n n C10 H16 XS6 sing 408 n n N1 H17 XS6 sing 409 n n N1 H18 XS6 sing 410 n n N5 H20 XS6 sing 411 n n N13 H22 XS6 sing 412 n n O14 H23 XS6 sing 413 n n # _atom_sites.entry_id 6UHV _atom_sites.fract_transf_matrix[1][1] 0.012419 _atom_sites.fract_transf_matrix[1][2] 0.00717 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01434 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004067 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XS6 A 1 701 701 XS6 INH . C 3 ZN A 1 702 1 ZN ZN . D 4 K A 1 703 1 K K . E 4 K A 1 704 2 K K . F 5 PO4 A 1 705 1 PO4 PO4 . G 5 PO4 A 1 706 2 PO4 PO4 . H 6 HOH A 1 801 29 HOH HOH . H 6 HOH A 2 802 68 HOH HOH . H 6 HOH A 3 803 52 HOH HOH . H 6 HOH A 4 804 45 HOH HOH . H 6 HOH A 5 805 32 HOH HOH . H 6 HOH A 6 806 70 HOH HOH . H 6 HOH A 7 807 75 HOH HOH . H 6 HOH A 8 808 72 HOH HOH . H 6 HOH A 9 809 69 HOH HOH . H 6 HOH A 10 810 26 HOH HOH . H 6 HOH A 11 811 10 HOH HOH . H 6 HOH A 12 812 49 HOH HOH . H 6 HOH A 13 813 1 HOH HOH . H 6 HOH A 14 814 43 HOH HOH . H 6 HOH A 15 815 3 HOH HOH . H 6 HOH A 16 816 5 HOH HOH . H 6 HOH A 17 817 59 HOH HOH . H 6 HOH A 18 818 65 HOH HOH . H 6 HOH A 19 819 25 HOH HOH . H 6 HOH A 20 820 14 HOH HOH . H 6 HOH A 21 821 8 HOH HOH . H 6 HOH A 22 822 13 HOH HOH . H 6 HOH A 23 823 44 HOH HOH . H 6 HOH A 24 824 33 HOH HOH . H 6 HOH A 25 825 30 HOH HOH . H 6 HOH A 26 826 34 HOH HOH . H 6 HOH A 27 827 11 HOH HOH . H 6 HOH A 28 828 27 HOH HOH . H 6 HOH A 29 829 40 HOH HOH . H 6 HOH A 30 830 4 HOH HOH . H 6 HOH A 31 831 47 HOH HOH . H 6 HOH A 32 832 36 HOH HOH . H 6 HOH A 33 833 20 HOH HOH . H 6 HOH A 34 834 12 HOH HOH . H 6 HOH A 35 835 41 HOH HOH . H 6 HOH A 36 836 28 HOH HOH . H 6 HOH A 37 837 21 HOH HOH . H 6 HOH A 38 838 7 HOH HOH . H 6 HOH A 39 839 19 HOH HOH . H 6 HOH A 40 840 31 HOH HOH . H 6 HOH A 41 841 6 HOH HOH . H 6 HOH A 42 842 35 HOH HOH . H 6 HOH A 43 843 53 HOH HOH . H 6 HOH A 44 844 46 HOH HOH . H 6 HOH A 45 845 9 HOH HOH . H 6 HOH A 46 846 39 HOH HOH . H 6 HOH A 47 847 62 HOH HOH . H 6 HOH A 48 848 51 HOH HOH . H 6 HOH A 49 849 61 HOH HOH . H 6 HOH A 50 850 22 HOH HOH . H 6 HOH A 51 851 48 HOH HOH . H 6 HOH A 52 852 24 HOH HOH . H 6 HOH A 53 853 58 HOH HOH . H 6 HOH A 54 854 50 HOH HOH . H 6 HOH A 55 855 15 HOH HOH . H 6 HOH A 56 856 38 HOH HOH . H 6 HOH A 57 857 63 HOH HOH . H 6 HOH A 58 858 16 HOH HOH . H 6 HOH A 59 859 42 HOH HOH . H 6 HOH A 60 860 55 HOH HOH . H 6 HOH A 61 861 73 HOH HOH . H 6 HOH A 62 862 71 HOH HOH . H 6 HOH A 63 863 2 HOH HOH . H 6 HOH A 64 864 74 HOH HOH . H 6 HOH A 65 865 57 HOH HOH . H 6 HOH A 66 866 67 HOH HOH . H 6 HOH A 67 867 17 HOH HOH . H 6 HOH A 68 868 18 HOH HOH . H 6 HOH A 69 869 60 HOH HOH . H 6 HOH A 70 870 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 XS6 . . . B 2 30.241 37.923 31.319 1 60.62 ? C2 XS6 701 A 1 HETATM 2 C C3 XS6 . . . B 2 29.185 37.537 32.399 1 50.32 ? C3 XS6 701 A 1 HETATM 3 C C4 XS6 . . . B 2 28.842 38.703 33.38 1 54.09 ? C4 XS6 701 A 1 HETATM 4 C C6 XS6 . . . B 2 26.995 39.868 34.585 1 42.47 ? C6 XS6 701 A 1 HETATM 5 C C7 XS6 . . . B 2 25.71 39.613 35.449 1 47.59 ? C7 XS6 701 A 1 HETATM 6 C C8 XS6 . . . B 2 24.539 40.602 35.154 1 33.78 ? C8 XS6 701 A 1 HETATM 7 C C9 XS6 . . . B 2 23.13 39.929 35.013 1 42.61 ? C9 XS6 701 A 1 HETATM 8 C C10 XS6 . . . B 2 22.051 40.798 34.277 1 36.19 ? C10 XS6 701 A 1 HETATM 9 C C11 XS6 . . . B 2 20.814 40.071 33.727 1 34.77 ? C11 XS6 701 A 1 HETATM 10 N N1 XS6 . . . B 2 29.627 38.126 29.982 1 57.88 ? N1 XS6 701 A 1 HETATM 11 N N5 XS6 . . . B 2 27.409 38.636 33.829 1 44.21 ? N5 XS6 701 A 1 HETATM 12 N N13 XS6 . . . B 2 19.958 39.299 34.535 1 35.25 ? N13 XS6 701 A 1 HETATM 13 O O12 XS6 . . . B 2 20.584 40.184 32.482 1 39.52 ? O12 XS6 701 A 1 HETATM 14 O O14 XS6 . . . B 2 18.847 38.675 33.889 1 39.99 ? O14 XS6 701 A 1 # _model_server_stats.io_time_ms 24 _model_server_stats.parse_time_ms 66 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 670 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 14 #