data_6UHX # _model_server_result.job_id JMyfqYsRMcVBDH8fdgyA_Q _model_server_result.datetime_utc '2025-08-01 02:08:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uhx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":301}' # _entry.id 6UHX # _exptl.entry_id 6UHX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.137 _cell.angle_gamma 90 _cell.entry_id 6UHX _cell.length_a 51.545 _cell.length_b 73.049 _cell.length_c 67.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UHX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 6UHX _atom_sites.fract_transf_matrix[1][1] 0.019401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003469 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 301 1 NAP NAP . D 2 NAP B 1 301 2 NAP NAP . E 3 HOH A 1 401 25 HOH HOH . E 3 HOH A 2 402 21 HOH HOH . E 3 HOH A 3 403 70 HOH HOH . E 3 HOH A 4 404 18 HOH HOH . E 3 HOH A 5 405 5 HOH HOH . E 3 HOH A 6 406 22 HOH HOH . E 3 HOH A 7 407 7 HOH HOH . E 3 HOH A 8 408 16 HOH HOH . E 3 HOH A 9 409 17 HOH HOH . E 3 HOH A 10 410 15 HOH HOH . E 3 HOH A 11 411 10 HOH HOH . E 3 HOH A 12 412 19 HOH HOH . E 3 HOH A 13 413 11 HOH HOH . E 3 HOH A 14 414 61 HOH HOH . E 3 HOH A 15 415 27 HOH HOH . E 3 HOH A 16 416 55 HOH HOH . E 3 HOH A 17 417 62 HOH HOH . E 3 HOH A 18 418 14 HOH HOH . E 3 HOH A 19 419 66 HOH HOH . E 3 HOH A 20 420 6 HOH HOH . E 3 HOH A 21 421 31 HOH HOH . E 3 HOH A 22 422 34 HOH HOH . E 3 HOH A 23 423 54 HOH HOH . E 3 HOH A 24 424 93 HOH HOH . E 3 HOH A 25 425 26 HOH HOH . E 3 HOH A 26 426 39 HOH HOH . E 3 HOH A 27 427 103 HOH HOH . E 3 HOH A 28 428 51 HOH HOH . E 3 HOH A 29 429 64 HOH HOH . E 3 HOH A 30 430 89 HOH HOH . E 3 HOH A 31 431 59 HOH HOH . E 3 HOH A 32 432 60 HOH HOH . E 3 HOH A 33 433 12 HOH HOH . E 3 HOH A 34 434 98 HOH HOH . E 3 HOH A 35 435 46 HOH HOH . E 3 HOH A 36 436 90 HOH HOH . E 3 HOH A 37 437 49 HOH HOH . E 3 HOH A 38 438 29 HOH HOH . E 3 HOH A 39 439 78 HOH HOH . E 3 HOH A 40 440 84 HOH HOH . E 3 HOH A 41 441 52 HOH HOH . E 3 HOH A 42 442 92 HOH HOH . E 3 HOH A 43 443 9 HOH HOH . E 3 HOH A 44 444 71 HOH HOH . E 3 HOH A 45 445 75 HOH HOH . E 3 HOH A 46 446 43 HOH HOH . E 3 HOH A 47 447 35 HOH HOH . E 3 HOH A 48 448 36 HOH HOH . E 3 HOH A 49 449 88 HOH HOH . E 3 HOH A 50 450 83 HOH HOH . E 3 HOH A 51 451 102 HOH HOH . E 3 HOH A 52 452 86 HOH HOH . E 3 HOH A 53 453 101 HOH HOH . E 3 HOH A 54 454 94 HOH HOH . E 3 HOH A 55 455 4 HOH HOH . F 3 HOH B 1 401 107 HOH HOH . F 3 HOH B 2 402 37 HOH HOH . F 3 HOH B 3 403 8 HOH HOH . F 3 HOH B 4 404 24 HOH HOH . F 3 HOH B 5 405 50 HOH HOH . F 3 HOH B 6 406 28 HOH HOH . F 3 HOH B 7 407 13 HOH HOH . F 3 HOH B 8 408 44 HOH HOH . F 3 HOH B 9 409 77 HOH HOH . F 3 HOH B 10 410 20 HOH HOH . F 3 HOH B 11 411 74 HOH HOH . F 3 HOH B 12 412 76 HOH HOH . F 3 HOH B 13 413 3 HOH HOH . F 3 HOH B 14 414 91 HOH HOH . F 3 HOH B 15 415 82 HOH HOH . F 3 HOH B 16 416 2 HOH HOH . F 3 HOH B 17 417 1 HOH HOH . F 3 HOH B 18 418 42 HOH HOH . F 3 HOH B 19 419 67 HOH HOH . F 3 HOH B 20 420 33 HOH HOH . F 3 HOH B 21 421 73 HOH HOH . F 3 HOH B 22 422 106 HOH HOH . F 3 HOH B 23 423 69 HOH HOH . F 3 HOH B 24 424 80 HOH HOH . F 3 HOH B 25 425 23 HOH HOH . F 3 HOH B 26 426 53 HOH HOH . F 3 HOH B 27 427 72 HOH HOH . F 3 HOH B 28 428 45 HOH HOH . F 3 HOH B 29 429 47 HOH HOH . F 3 HOH B 30 430 79 HOH HOH . F 3 HOH B 31 431 58 HOH HOH . F 3 HOH B 32 432 81 HOH HOH . F 3 HOH B 33 433 63 HOH HOH . F 3 HOH B 34 434 85 HOH HOH . F 3 HOH B 35 435 105 HOH HOH . F 3 HOH B 36 436 41 HOH HOH . F 3 HOH B 37 437 65 HOH HOH . F 3 HOH B 38 438 68 HOH HOH . F 3 HOH B 39 439 104 HOH HOH . F 3 HOH B 40 440 99 HOH HOH . F 3 HOH B 41 441 38 HOH HOH . F 3 HOH B 42 442 97 HOH HOH . F 3 HOH B 43 443 40 HOH HOH . F 3 HOH B 44 444 108 HOH HOH . F 3 HOH B 45 445 95 HOH HOH . F 3 HOH B 46 446 57 HOH HOH . F 3 HOH B 47 447 96 HOH HOH . F 3 HOH B 48 448 30 HOH HOH . F 3 HOH B 49 449 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . C 2 -15.109 15.941 -18.89 1 39.47 ? PA NAP 301 A 1 HETATM 2 O O1A NAP . . . C 2 -15.536 16.555 -17.587 1 40.53 ? O1A NAP 301 A 1 HETATM 3 O O2A NAP . . . C 2 -16.326 15.814 -19.814 1 38.31 ? O2A NAP 301 A 1 HETATM 4 O O5B NAP . . . C 2 -13.939 16.899 -19.633 1 38.65 ? O5B NAP 301 A 1 HETATM 5 C C5B NAP . . . C 2 -12.592 16.432 -19.63 1 37.22 ? C5B NAP 301 A 1 HETATM 6 C C4B NAP . . . C 2 -11.604 17.635 -19.539 1 36.35 ? C4B NAP 301 A 1 HETATM 7 O O4B NAP . . . C 2 -11.233 18.034 -20.736 1 36.27 ? O4B NAP 301 A 1 HETATM 8 C C3B NAP . . . C 2 -12.296 18.827 -18.923 1 35.96 ? C3B NAP 301 A 1 HETATM 9 O O3B NAP . . . C 2 -11.779 19.075 -17.666 1 35.93 ? O3B NAP 301 A 1 HETATM 10 C C2B NAP . . . C 2 -11.968 20.016 -19.865 1 36.19 ? C2B NAP 301 A 1 HETATM 11 O O2B NAP . . . C 2 -11.577 21.23 -19.031 1 37.03 ? O2B NAP 301 A 1 HETATM 12 C C1B NAP . . . C 2 -10.98 19.608 -20.571 1 35.56 ? C1B NAP 301 A 1 HETATM 13 N N9A NAP . . . C 2 -10.954 20.306 -21.902 1 33 ? N9A NAP 301 A 1 HETATM 14 C C8A NAP . . . C 2 -11.751 20.106 -22.954 1 33.07 ? C8A NAP 301 A 1 HETATM 15 N N7A NAP . . . C 2 -11.368 20.962 -23.94 1 33.06 ? N7A NAP 301 A 1 HETATM 16 C C5A NAP . . . C 2 -10.332 21.688 -23.483 1 31.99 ? C5A NAP 301 A 1 HETATM 17 C C6A NAP . . . C 2 -9.571 22.68 -24.048 1 32.73 ? C6A NAP 301 A 1 HETATM 18 N N6A NAP . . . C 2 -9.894 23.124 -25.48 1 31.49 ? N6A NAP 301 A 1 HETATM 19 N N1A NAP . . . C 2 -8.583 23.242 -23.355 1 32.3 ? N1A NAP 301 A 1 HETATM 20 C C2A NAP . . . C 2 -8.323 22.83 -22.077 1 32.95 ? C2A NAP 301 A 1 HETATM 21 N N3A NAP . . . C 2 -9.066 21.861 -21.521 1 32.84 ? N3A NAP 301 A 1 HETATM 22 C C4A NAP . . . C 2 -10.071 21.287 -22.223 1 33.7 ? C4A NAP 301 A 1 HETATM 23 O O3 NAP . . . C 2 -14.474 14.482 -18.612 1 41.94 ? O3 NAP 301 A 1 HETATM 24 P PN NAP . . . C 2 -14.52 13.237 -19.733 1 44.9 ? PN NAP 301 A 1 HETATM 25 O O1N NAP . . . C 2 -14.442 13.821 -21.09 1 46.63 ? O1N NAP 301 A 1 HETATM 26 O O2N NAP . . . C 2 -15.796 12.471 -19.601 1 45.67 ? O2N NAP 301 A 1 HETATM 27 O O5D NAP . . . C 2 -13.239 12.202 -19.477 1 45.22 ? O5D NAP 301 A 1 HETATM 28 C C5D NAP . . . C 2 -11.931 12.654 -19.776 1 44.92 ? C5D NAP 301 A 1 HETATM 29 C C4D NAP . . . C 2 -11.372 11.84 -20.958 1 43.95 ? C4D NAP 301 A 1 HETATM 30 O O4D NAP . . . C 2 -11.876 10.606 -20.946 1 43.08 ? O4D NAP 301 A 1 HETATM 31 C C3D NAP . . . C 2 -11.814 12.474 -22.277 1 43.68 ? C3D NAP 301 A 1 HETATM 32 O O3D NAP . . . C 2 -10.756 12.665 -23.075 1 44.47 ? O3D NAP 301 A 1 HETATM 33 C C2D NAP . . . C 2 -12.794 11.435 -22.914 1 43.16 ? C2D NAP 301 A 1 HETATM 34 O O2D NAP . . . C 2 -12.685 11.462 -24.408 1 43.46 ? O2D NAP 301 A 1 HETATM 35 C C1D NAP . . . C 2 -12.379 10.293 -22.449 1 42.68 ? C1D NAP 301 A 1 HETATM 36 N N1N NAP . . . C 2 -13.463 9.319 -22.433 1 42.13 ? N1N NAP 301 A 1 HETATM 37 C C2N NAP . . . C 2 -14.503 9.468 -21.593 1 42.53 ? C2N NAP 301 A 1 HETATM 38 C C3N NAP . . . C 2 -15.529 8.53 -21.59 1 42.61 ? C3N NAP 301 A 1 HETATM 39 C C7N NAP . . . C 2 -16.745 8.698 -20.612 1 42.39 ? C7N NAP 301 A 1 HETATM 40 O O7N NAP . . . C 2 -17.667 7.926 -20.662 1 41.56 ? O7N NAP 301 A 1 HETATM 41 N N7N NAP . . . C 2 -16.757 9.735 -19.687 1 42.71 ? N7N NAP 301 A 1 HETATM 42 C C4N NAP . . . C 2 -15.477 7.466 -22.436 1 42.06 ? C4N NAP 301 A 1 HETATM 43 C C5N NAP . . . C 2 -14.422 7.32 -23.284 1 41.6 ? C5N NAP 301 A 1 HETATM 44 C C6N NAP . . . C 2 -13.418 8.241 -23.285 1 41.79 ? C6N NAP 301 A 1 HETATM 45 P P2B NAP . . . C 2 -12.485 22.591 -19.179 1 38.2 ? P2B NAP 301 A 1 HETATM 46 O O1X NAP . . . C 2 -12.143 23.557 -18.055 1 38.8 ? O1X NAP 301 A 1 HETATM 47 O O2X NAP . . . C 2 -12.195 23.263 -20.548 1 37.99 ? O2X NAP 301 A 1 HETATM 48 O O3X NAP . . . C 2 -13.952 22.224 -19.1 1 39.26 ? O3X NAP 301 A 1 # _model_server_stats.io_time_ms 54 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 292 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #