data_6UHX # _model_server_result.job_id 5Zfz32mGP2KubAIOKi-mPw _model_server_result.datetime_utc '2025-08-02 22:04:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uhx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 6UHX # _exptl.entry_id 6UHX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 743.405 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.137 _cell.angle_gamma 90 _cell.entry_id 6UHX _cell.length_a 51.545 _cell.length_b 73.049 _cell.length_c 67.8 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UHX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C21 H28 N7 O17 P3' _chem_comp.formula_weight 743.405 _chem_comp.id NAP _chem_comp.mon_nstd_flag . _chem_comp.name 'NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE" # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAP doub 237 n n PA O2A NAP sing 238 n n PA O5B NAP sing 239 n n PA O3 NAP sing 240 n n O2A HOA2 NAP sing 241 n n O5B C5B NAP sing 242 n n C5B C4B NAP sing 243 n n C5B H51A NAP sing 244 n n C5B H52A NAP sing 245 n n C4B O4B NAP sing 246 n n C4B C3B NAP sing 247 n n C4B H4B NAP sing 248 n n O4B C1B NAP sing 249 n n C3B O3B NAP sing 250 n n C3B C2B NAP sing 251 n n C3B H3B NAP sing 252 n n O3B HO3A NAP sing 253 n n C2B O2B NAP sing 254 n n C2B C1B NAP sing 255 n n C2B H2B NAP sing 256 n n O2B P2B NAP sing 257 n n C1B N9A NAP sing 258 n n C1B H1B NAP sing 259 n n N9A C8A NAP sing 260 n y N9A C4A NAP sing 261 n y C8A N7A NAP doub 262 n y C8A H8A NAP sing 263 n n N7A C5A NAP sing 264 n y C5A C6A NAP sing 265 n y C5A C4A NAP doub 266 n y C6A N6A NAP sing 267 n n C6A N1A NAP doub 268 n y N6A H61A NAP sing 269 n n N6A H62A NAP sing 270 n n N1A C2A NAP sing 271 n y C2A N3A NAP doub 272 n y C2A H2A NAP sing 273 n n N3A C4A NAP sing 274 n y O3 PN NAP sing 275 n n PN O1N NAP doub 276 n n PN O2N NAP sing 277 n n PN O5D NAP sing 278 n n O5D C5D NAP sing 279 n n C5D C4D NAP sing 280 n n C5D H51N NAP sing 281 n n C5D H52N NAP sing 282 n n C4D O4D NAP sing 283 n n C4D C3D NAP sing 284 n n C4D H4D NAP sing 285 n n O4D C1D NAP sing 286 n n C3D O3D NAP sing 287 n n C3D C2D NAP sing 288 n n C3D H3D NAP sing 289 n n O3D HO3N NAP sing 290 n n C2D O2D NAP sing 291 n n C2D C1D NAP sing 292 n n C2D H2D NAP sing 293 n n O2D HO2N NAP sing 294 n n C1D N1N NAP sing 295 n n C1D H1D NAP sing 296 n n N1N C2N NAP sing 297 n y N1N C6N NAP doub 298 n y C2N C3N NAP doub 299 n y C2N H2N NAP sing 300 n n C3N C7N NAP sing 301 n n C3N C4N NAP sing 302 n y C7N O7N NAP doub 303 n n C7N N7N NAP sing 304 n n N7N H71N NAP sing 305 n n N7N H72N NAP sing 306 n n C4N C5N NAP doub 307 n y C4N H4N NAP sing 308 n n C5N C6N NAP sing 309 n y C5N H5N NAP sing 310 n n C6N H6N NAP sing 311 n n P2B O1X NAP doub 312 n n P2B O2X NAP sing 313 n n P2B O3X NAP sing 314 n n O2X HOP2 NAP sing 315 n n O3X HOP3 NAP sing 316 n n # _atom_sites.entry_id 6UHX _atom_sites.fract_transf_matrix[1][1] 0.019401 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003469 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013689 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014983 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 NAP A 1 301 1 NAP NAP . D 2 NAP B 1 301 2 NAP NAP . E 3 HOH A 1 401 25 HOH HOH . E 3 HOH A 2 402 21 HOH HOH . E 3 HOH A 3 403 70 HOH HOH . E 3 HOH A 4 404 18 HOH HOH . E 3 HOH A 5 405 5 HOH HOH . E 3 HOH A 6 406 22 HOH HOH . E 3 HOH A 7 407 7 HOH HOH . E 3 HOH A 8 408 16 HOH HOH . E 3 HOH A 9 409 17 HOH HOH . E 3 HOH A 10 410 15 HOH HOH . E 3 HOH A 11 411 10 HOH HOH . E 3 HOH A 12 412 19 HOH HOH . E 3 HOH A 13 413 11 HOH HOH . E 3 HOH A 14 414 61 HOH HOH . E 3 HOH A 15 415 27 HOH HOH . E 3 HOH A 16 416 55 HOH HOH . E 3 HOH A 17 417 62 HOH HOH . E 3 HOH A 18 418 14 HOH HOH . E 3 HOH A 19 419 66 HOH HOH . E 3 HOH A 20 420 6 HOH HOH . E 3 HOH A 21 421 31 HOH HOH . E 3 HOH A 22 422 34 HOH HOH . E 3 HOH A 23 423 54 HOH HOH . E 3 HOH A 24 424 93 HOH HOH . E 3 HOH A 25 425 26 HOH HOH . E 3 HOH A 26 426 39 HOH HOH . E 3 HOH A 27 427 103 HOH HOH . E 3 HOH A 28 428 51 HOH HOH . E 3 HOH A 29 429 64 HOH HOH . E 3 HOH A 30 430 89 HOH HOH . E 3 HOH A 31 431 59 HOH HOH . E 3 HOH A 32 432 60 HOH HOH . E 3 HOH A 33 433 12 HOH HOH . E 3 HOH A 34 434 98 HOH HOH . E 3 HOH A 35 435 46 HOH HOH . E 3 HOH A 36 436 90 HOH HOH . E 3 HOH A 37 437 49 HOH HOH . E 3 HOH A 38 438 29 HOH HOH . E 3 HOH A 39 439 78 HOH HOH . E 3 HOH A 40 440 84 HOH HOH . E 3 HOH A 41 441 52 HOH HOH . E 3 HOH A 42 442 92 HOH HOH . E 3 HOH A 43 443 9 HOH HOH . E 3 HOH A 44 444 71 HOH HOH . E 3 HOH A 45 445 75 HOH HOH . E 3 HOH A 46 446 43 HOH HOH . E 3 HOH A 47 447 35 HOH HOH . E 3 HOH A 48 448 36 HOH HOH . E 3 HOH A 49 449 88 HOH HOH . E 3 HOH A 50 450 83 HOH HOH . E 3 HOH A 51 451 102 HOH HOH . E 3 HOH A 52 452 86 HOH HOH . E 3 HOH A 53 453 101 HOH HOH . E 3 HOH A 54 454 94 HOH HOH . E 3 HOH A 55 455 4 HOH HOH . F 3 HOH B 1 401 107 HOH HOH . F 3 HOH B 2 402 37 HOH HOH . F 3 HOH B 3 403 8 HOH HOH . F 3 HOH B 4 404 24 HOH HOH . F 3 HOH B 5 405 50 HOH HOH . F 3 HOH B 6 406 28 HOH HOH . F 3 HOH B 7 407 13 HOH HOH . F 3 HOH B 8 408 44 HOH HOH . F 3 HOH B 9 409 77 HOH HOH . F 3 HOH B 10 410 20 HOH HOH . F 3 HOH B 11 411 74 HOH HOH . F 3 HOH B 12 412 76 HOH HOH . F 3 HOH B 13 413 3 HOH HOH . F 3 HOH B 14 414 91 HOH HOH . F 3 HOH B 15 415 82 HOH HOH . F 3 HOH B 16 416 2 HOH HOH . F 3 HOH B 17 417 1 HOH HOH . F 3 HOH B 18 418 42 HOH HOH . F 3 HOH B 19 419 67 HOH HOH . F 3 HOH B 20 420 33 HOH HOH . F 3 HOH B 21 421 73 HOH HOH . F 3 HOH B 22 422 106 HOH HOH . F 3 HOH B 23 423 69 HOH HOH . F 3 HOH B 24 424 80 HOH HOH . F 3 HOH B 25 425 23 HOH HOH . F 3 HOH B 26 426 53 HOH HOH . F 3 HOH B 27 427 72 HOH HOH . F 3 HOH B 28 428 45 HOH HOH . F 3 HOH B 29 429 47 HOH HOH . F 3 HOH B 30 430 79 HOH HOH . F 3 HOH B 31 431 58 HOH HOH . F 3 HOH B 32 432 81 HOH HOH . F 3 HOH B 33 433 63 HOH HOH . F 3 HOH B 34 434 85 HOH HOH . F 3 HOH B 35 435 105 HOH HOH . F 3 HOH B 36 436 41 HOH HOH . F 3 HOH B 37 437 65 HOH HOH . F 3 HOH B 38 438 68 HOH HOH . F 3 HOH B 39 439 104 HOH HOH . F 3 HOH B 40 440 99 HOH HOH . F 3 HOH B 41 441 38 HOH HOH . F 3 HOH B 42 442 97 HOH HOH . F 3 HOH B 43 443 40 HOH HOH . F 3 HOH B 44 444 108 HOH HOH . F 3 HOH B 45 445 95 HOH HOH . F 3 HOH B 46 446 57 HOH HOH . F 3 HOH B 47 447 96 HOH HOH . F 3 HOH B 48 448 30 HOH HOH . F 3 HOH B 49 449 100 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAP . . . D 2 -1.68 10.011 -57.192 1 41.67 ? PA NAP 301 B 1 HETATM 2 O O1A NAP . . . D 2 -0.795 9.871 -58.395 1 41.86 ? O1A NAP 301 B 1 HETATM 3 O O2A NAP . . . D 2 -0.815 10.313 -55.962 1 42.94 ? O2A NAP 301 B 1 HETATM 4 O O5B NAP . . . D 2 -2.782 11.262 -57.41 1 41.38 ? O5B NAP 301 B 1 HETATM 5 C C5B NAP . . . D 2 -3.606 11.618 -56.303 1 41.21 ? C5B NAP 301 B 1 HETATM 6 C C4B NAP . . . D 2 -4.966 12.147 -56.849 1 41.14 ? C4B NAP 301 B 1 HETATM 7 O O4B NAP . . . D 2 -5.582 12.868 -55.935 1 41.09 ? O4B NAP 301 B 1 HETATM 8 C C3B NAP . . . D 2 -4.694 13.071 -58.009 1 40.8 ? C3B NAP 301 B 1 HETATM 9 O O3B NAP . . . D 2 -5.578 12.821 -59.042 1 40.96 ? O3B NAP 301 B 1 HETATM 10 C C2B NAP . . . D 2 -4.942 14.484 -57.427 1 40.64 ? C2B NAP 301 B 1 HETATM 11 O O2B NAP . . . D 2 -5.355 15.433 -58.544 1 40.67 ? O2B NAP 301 B 1 HETATM 12 C C1B NAP . . . D 2 -5.901 14.292 -56.604 1 38.73 ? C1B NAP 301 B 1 HETATM 13 N N9A NAP . . . D 2 -5.94 15.373 -55.561 1 38.57 ? N9A NAP 301 B 1 HETATM 14 C C8A NAP . . . D 2 -5.132 15.528 -54.509 1 35.79 ? C8A NAP 301 B 1 HETATM 15 N N7A NAP . . . D 2 -5.53 16.639 -53.833 1 35.83 ? N7A NAP 301 B 1 HETATM 16 C C5A NAP . . . D 2 -6.588 17.163 -54.478 1 37.73 ? C5A NAP 301 B 1 HETATM 17 C C6A NAP . . . D 2 -7.37 18.264 -54.237 1 34.51 ? C6A NAP 301 B 1 HETATM 18 N N6A NAP . . . D 2 -6.958 19.127 -53.067 1 34.68 ? N6A NAP 301 B 1 HETATM 19 N N1A NAP . . . D 2 -8.377 18.563 -55.052 1 35.15 ? N1A NAP 301 B 1 HETATM 20 C C2A NAP . . . D 2 -8.636 17.769 -56.137 1 34.89 ? C2A NAP 301 B 1 HETATM 21 N N3A NAP . . . D 2 -7.874 16.691 -56.378 1 35.34 ? N3A NAP 301 B 1 HETATM 22 C C4A NAP . . . D 2 -6.848 16.385 -55.549 1 35.29 ? C4A NAP 301 B 1 HETATM 23 O O3 NAP . . . D 2 -2.522 8.651 -56.972 1 41.54 ? O3 NAP 301 B 1 HETATM 24 P PN NAP . . . D 2 -2.395 7.686 -55.607 1 43.18 ? PN NAP 301 B 1 HETATM 25 O O1N NAP . . . D 2 -2.252 8.546 -54.412 1 44.02 ? O1N NAP 301 B 1 HETATM 26 O O2N NAP . . . D 2 -1.206 6.785 -55.713 1 43.52 ? O2N NAP 301 B 1 HETATM 27 O O5D NAP . . . D 2 -3.781 6.771 -55.467 1 43.46 ? O5D NAP 301 B 1 HETATM 28 C C5D NAP . . . D 2 -5.011 7.452 -55.3 1 41.91 ? C5D NAP 301 B 1 HETATM 29 C C4D NAP . . . D 2 -5.615 7.1 -53.927 1 39.97 ? C4D NAP 301 B 1 HETATM 30 O O4D NAP . . . D 2 -5.239 5.875 -53.565 1 39.16 ? O4D NAP 301 B 1 HETATM 31 C C3D NAP . . . D 2 -5.077 8.056 -52.864 1 39.26 ? C3D NAP 301 B 1 HETATM 32 O O3D NAP . . . D 2 -6.078 8.496 -52.093 1 39.38 ? O3D NAP 301 B 1 HETATM 33 C C2D NAP . . . D 2 -4.086 7.191 -52.019 1 38.86 ? C2D NAP 301 B 1 HETATM 34 O O2D NAP . . . D 2 -4.067 7.658 -50.595 1 39.4 ? O2D NAP 301 B 1 HETATM 35 C C1D NAP . . . D 2 -4.573 5.987 -52.096 1 38.29 ? C1D NAP 301 B 1 HETATM 36 N N1N NAP . . . D 2 -3.514 4.998 -51.95 1 37.31 ? N1N NAP 301 B 1 HETATM 37 C C2N NAP . . . D 2 -2.545 4.895 -52.877 1 37.59 ? C2N NAP 301 B 1 HETATM 38 C C3N NAP . . . D 2 -1.541 3.946 -52.724 1 37.99 ? C3N NAP 301 B 1 HETATM 39 C C7N NAP . . . D 2 -0.407 3.821 -53.802 1 37.73 ? C7N NAP 301 B 1 HETATM 40 O O7N NAP . . . D 2 0.508 3.061 -53.622 1 37.71 ? O7N NAP 301 B 1 HETATM 41 N N7N NAP . . . D 2 -0.462 4.583 -54.962 1 37.14 ? N7N NAP 301 B 1 HETATM 42 C C4N NAP . . . D 2 -1.542 3.125 -51.639 1 37.83 ? C4N NAP 301 B 1 HETATM 43 C C5N NAP . . . D 2 -2.526 3.234 -50.705 1 37.58 ? C5N NAP 301 B 1 HETATM 44 C C6N NAP . . . D 2 -3.51 4.165 -50.857 1 37.27 ? C6N NAP 301 B 1 HETATM 45 P P2B NAP . . . D 2 -4.557 16.862 -58.681 1 40.58 ? P2B NAP 301 B 1 HETATM 46 O O1X NAP . . . D 2 -4.551 17.297 -60.138 1 40.62 ? O1X NAP 301 B 1 HETATM 47 O O2X NAP . . . D 2 -5.266 17.939 -57.818 1 40.68 ? O2X NAP 301 B 1 HETATM 48 O O3X NAP . . . D 2 -3.132 16.697 -58.2 1 40.84 ? O3X NAP 301 B 1 # _model_server_stats.io_time_ms 67 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 247 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 48 #