data_6UIM # _model_server_result.job_id ZPZv39EF8L7wQ4CVulKfkA _model_server_result.datetime_utc '2024-11-25 01:52:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uim # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 6UIM # _exptl.entry_id 6UIM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 218.359 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 7-[(3-aminopropyl)amino]-1-sulfanylheptan-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 6UIM _cell.length_a 80.871 _cell.length_b 80.871 _cell.length_c 241.54 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UIM _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall 'P 31 2"' _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O ASP 172 A ASP 172 1_555 F K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.918 ? metalc ? metalc2 A OD2 ASP 172 A ASP 172 1_555 F K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.903 ? metalc ? metalc3 A OD1 ASP 174 A ASP 174 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.014 ? metalc ? metalc4 A O ASP 174 A ASP 174 1_555 F K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.58 ? metalc ? metalc5 A ND1 HIS 176 A HIS 176 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.223 ? metalc ? metalc6 A O HIS 176 A HIS 176 1_555 F K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc7 A O PHE 185 A PHE 185 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.753 ? metalc ? metalc8 A O ASP 188 A ASP 188 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.051 ? metalc ? metalc9 A O VAL 191 A VAL 191 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc10 A OG SER 195 A SER 195 1_555 F K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.886 ? metalc ? metalc11 A O TRP 196 A TRP 196 1_555 F K K . A K 705 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.681 ? metalc ? metalc12 A O PHE 224 A PHE 224 1_555 G K K . A K 706 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.009 ? metalc ? metalc13 A OD2 ASP 267 A ASP 267 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.1 ? metalc ? metalc14 B S14 Q7Y . A Q7Y 701 1_555 C ZN ZN . A ZN 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc15 G K K . A K 706 1_555 H O HOH . A HOH 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.101 ? metalc ? metalc16 G K K . A K 706 1_555 H O HOH . A HOH 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.954 ? # _chem_comp.formula 'C10 H22 N2 O S' _chem_comp.formula_weight 218.359 _chem_comp.id Q7Y _chem_comp.mon_nstd_flag . _chem_comp.name 7-[(3-aminopropyl)amino]-1-sulfanylheptan-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N01 C02 Q7Y sing 281 n n C02 C03 Q7Y sing 282 n n C03 C04 Q7Y sing 283 n n C04 N05 Q7Y sing 284 n n O12 C11 Q7Y doub 285 n n N05 C06 Q7Y sing 286 n n S14 C13 Q7Y sing 287 n n C11 C13 Q7Y sing 288 n n C11 C10 Q7Y sing 289 n n C09 C10 Q7Y sing 290 n n C09 C08 Q7Y sing 291 n n C06 C07 Q7Y sing 292 n n C07 C08 Q7Y sing 293 n n C10 H1 Q7Y sing 294 n n C10 H2 Q7Y sing 295 n n C13 H3 Q7Y sing 296 n n C13 H4 Q7Y sing 297 n n C02 H5 Q7Y sing 298 n n C02 H6 Q7Y sing 299 n n C03 H7 Q7Y sing 300 n n C03 H8 Q7Y sing 301 n n C04 H9 Q7Y sing 302 n n C04 H10 Q7Y sing 303 n n C06 H11 Q7Y sing 304 n n C06 H12 Q7Y sing 305 n n C07 H13 Q7Y sing 306 n n C07 H14 Q7Y sing 307 n n C08 H15 Q7Y sing 308 n n C08 H16 Q7Y sing 309 n n C09 H17 Q7Y sing 310 n n C09 H18 Q7Y sing 311 n n N01 H19 Q7Y sing 312 n n N01 H20 Q7Y sing 313 n n N05 H22 Q7Y sing 314 n n S14 H24 Q7Y sing 315 n n # _atom_sites.entry_id 6UIM _atom_sites.fract_transf_matrix[1][1] 0.012365 _atom_sites.fract_transf_matrix[1][2] 0.007139 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014278 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00414 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 Q7Y A 1 701 701 Q7Y INH . C 3 ZN A 1 702 1 ZN ZN . D 4 PO4 A 1 703 1 PO4 PO4 . E 4 PO4 A 1 704 2 PO4 PO4 . F 5 K A 1 705 1 K K . G 5 K A 1 706 2 K K . H 6 HOH A 1 801 15 HOH HOH . H 6 HOH A 2 802 14 HOH HOH . H 6 HOH A 3 803 12 HOH HOH . H 6 HOH A 4 804 2 HOH HOH . H 6 HOH A 5 805 8 HOH HOH . H 6 HOH A 6 806 10 HOH HOH . H 6 HOH A 7 807 16 HOH HOH . H 6 HOH A 8 808 4 HOH HOH . H 6 HOH A 9 809 9 HOH HOH . H 6 HOH A 10 810 7 HOH HOH . H 6 HOH A 11 811 1 HOH HOH . H 6 HOH A 12 812 5 HOH HOH . H 6 HOH A 13 813 3 HOH HOH . H 6 HOH A 14 814 13 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 Q7Y . . . B 2 63.563 109.743 275.84 1 46.12 ? C10 Q7Y 701 A 1 HETATM 2 C C11 Q7Y . . . B 2 62.366 109.824 274.933 1 56.57 ? C11 Q7Y 701 A 1 HETATM 3 C C13 Q7Y . . . B 2 61.034 110.063 275.554 1 60.71 ? C13 Q7Y 701 A 1 HETATM 4 C C02 Q7Y . . . B 2 70.244 107.087 271.107 1 54.19 ? C02 Q7Y 701 A 1 HETATM 5 C C03 Q7Y . . . B 2 70.765 107.687 272.43 1 50.97 ? C03 Q7Y 701 A 1 HETATM 6 C C04 Q7Y . . . B 2 69.763 107.403 273.569 1 51.8 ? C04 Q7Y 701 A 1 HETATM 7 C C06 Q7Y . . . B 2 68.168 108.565 275.117 1 53.87 ? C06 Q7Y 701 A 1 HETATM 8 C C07 Q7Y . . . B 2 67.392 109.892 275.198 1 56.11 ? C07 Q7Y 701 A 1 HETATM 9 C C08 Q7Y . . . B 2 66.085 109.746 275.972 1 59.78 ? C08 Q7Y 701 A 1 HETATM 10 C C09 Q7Y . . . B 2 64.858 109.993 275.098 1 45.28 ? C09 Q7Y 701 A 1 HETATM 11 N N01 Q7Y . . . B 2 70.949 107.687 269.97 1 60.75 ? N01 Q7Y 701 A 1 HETATM 12 N N05 Q7Y . . . B 2 69.246 108.681 274.115 1 64.61 ? N05 Q7Y 701 A 1 HETATM 13 O O12 Q7Y . . . B 2 62.47 109.703 273.722 1 48.81 ? O12 Q7Y 701 A 1 HETATM 14 S S14 Q7Y . . . B 2 59.787 109.322 274.518 1 48.57 ? S14 Q7Y 701 A 1 # _model_server_stats.io_time_ms 75 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 270 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 14 #