data_6UIO # _model_server_result.job_id R4embpRafuHauTSubr381g _model_server_result.datetime_utc '2024-11-26 16:51:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uio # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"JB","auth_seq_id":219}' # _entry.id 6UIO # _exptl.entry_id 6UIO _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UIO _cell.length_a 51.048 _cell.length_b 85.924 _cell.length_c 111.677 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UIO _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,C,D,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB,JB,LB,MB,NB 1 1 A,E,F,G,H,I,J,K,L,M,N,O,KB 1 2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x+1/2,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 25.524 0 55.8385 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 7 PA N N ? 7 QA N N ? 7 GB N N ? 7 HB N N ? 7 IB N N ? 7 JB N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 95 1_555 A SG CYS 75 A CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? disulf ? disulf2 A SG CYS 89 A CYS 119 1_555 A SG CYS 109 A CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? disulf ? disulf3 B SG CYS 65 B CYS 95 1_555 B SG CYS 75 B CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf4 B SG CYS 89 B CYS 119 1_555 B SG CYS 109 B CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf5 C SG CYS 65 C CYS 95 1_555 C SG CYS 75 C CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf6 C SG CYS 89 C CYS 119 1_555 C SG CYS 109 C CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.087 ? disulf ? disulf7 D SG CYS 65 D CYS 95 1_555 D SG CYS 75 D CYS 105 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? disulf ? disulf8 D SG CYS 89 D CYS 119 1_555 D SG CYS 109 D CYS 139 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? metalc ? metalc1 KB O HOH . A HOH 332 2_555 QA NA NA . C NA 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.721 ? metalc ? metalc2 D OG SER 7 D SER 37 1_555 HB NA NA . D NA 217 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.974 ? metalc ? metalc3 D O GLN 47 D GLN 77 1_555 JB NA NA . D NA 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.17 ? metalc ? metalc4 D OG1 THR 49 D THR 79 1_555 JB NA NA . D NA 219 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.346 ? metalc ? metalc5 D O ARG 51 D ARG 81 1_555 JB NA NA . D NA 219 1_555 ? A ? ? ? ? ? ? ? ? ? ? 3.184 ? metalc ? metalc6 D O ARG 51 D ARG 81 1_555 JB NA NA . D NA 219 1_555 ? B ? ? ? ? ? ? ? ? ? ? 3.172 ? metalc ? metalc7 D O SER 90 D SER 120 1_555 GB NA NA . D NA 216 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.107 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 6UIO _atom_sites.fract_transf_matrix[1][1] 0.019589 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011638 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008954 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 IOD A 1 201 6 IOD IOD . F 2 IOD A 1 202 19 IOD IOD . G 2 IOD A 1 203 20 IOD IOD . H 2 IOD A 1 204 21 IOD IOD . I 2 IOD A 1 205 22 IOD IOD . J 3 SO4 A 1 206 6 SO4 SO4 . K 3 SO4 A 1 207 7 SO4 SO4 . L 3 SO4 A 1 208 10 SO4 SO4 . M 3 SO4 A 1 209 11 SO4 SO4 . N 3 SO4 A 1 210 13 SO4 SO4 . O 3 SO4 A 1 211 18 SO4 SO4 . P 2 IOD B 1 201 5 IOD IOD . Q 2 IOD B 1 202 11 IOD IOD . R 4 I2I B 1 203 1 I2I I2I . S 3 SO4 B 1 204 1 SO4 SO4 . T 3 SO4 B 1 205 4 SO4 SO4 . U 3 SO4 B 1 206 5 SO4 SO4 . V 3 SO4 B 1 207 8 SO4 SO4 . W 3 SO4 B 1 208 12 SO4 SO4 . X 3 SO4 B 1 209 17 SO4 SO4 . Y 5 CL B 1 210 2 CL CL . Z 5 CL B 1 211 6 CL CL . AA 5 CL B 1 212 8 CL CL . BA 2 IOD C 1 201 2 IOD IOD . CA 2 IOD C 1 202 3 IOD IOD . DA 2 IOD C 1 203 7 IOD IOD . EA 2 IOD C 1 204 8 IOD IOD . FA 2 IOD C 1 205 9 IOD IOD . GA 2 IOD C 1 206 10 IOD IOD . HA 2 IOD C 1 207 18 IOD IOD . IA 3 SO4 C 1 208 3 SO4 SO4 . JA 3 SO4 C 1 209 15 SO4 SO4 . KA 3 SO4 C 1 210 16 SO4 SO4 . LA 5 CL C 1 211 1 CL CL . MA 5 CL C 1 212 5 CL CL . NA 5 CL C 1 213 7 CL CL . OA 6 MES C 1 214 1 MES MES . PA 7 NA C 1 215 1 NA NA . QA 7 NA C 1 216 2 NA NA . RA 2 IOD D 1 201 1 IOD IOD . SA 2 IOD D 1 202 4 IOD IOD . TA 2 IOD D 1 203 12 IOD IOD . UA 2 IOD D 1 204 13 IOD IOD . VA 2 IOD D 1 205 14 IOD IOD . WA 2 IOD D 1 206 15 IOD IOD . XA 2 IOD D 1 207 16 IOD IOD . YA 2 IOD D 1 208 17 IOD IOD . ZA 4 I2I D 1 209 2 I2I I2I . AB 3 SO4 D 1 210 2 SO4 SO4 . BB 3 SO4 D 1 211 9 SO4 SO4 . CB 3 SO4 D 1 212 14 SO4 SO4 . DB 5 CL D 1 213 3 CL CL . EB 5 CL D 1 214 4 CL CL . FB 6 MES D 1 215 2 MES MES . GB 7 NA D 1 216 3 NA NA . HB 7 NA D 1 217 4 NA NA . IB 7 NA D 1 218 5 NA NA . JB 7 NA D 1 219 6 NA NA . KB 8 HOH A 1 301 16 HOH HOH . KB 8 HOH A 2 302 121 HOH HOH . KB 8 HOH A 3 303 111 HOH HOH . KB 8 HOH A 4 304 65 HOH HOH . KB 8 HOH A 5 305 60 HOH HOH . KB 8 HOH A 6 306 29 HOH HOH . KB 8 HOH A 7 307 5 HOH HOH . KB 8 HOH A 8 308 97 HOH HOH . KB 8 HOH A 9 309 34 HOH HOH . KB 8 HOH A 10 310 22 HOH HOH . KB 8 HOH A 11 311 15 HOH HOH . KB 8 HOH A 12 312 118 HOH HOH . KB 8 HOH A 13 313 9 HOH HOH . KB 8 HOH A 14 314 126 HOH HOH . KB 8 HOH A 15 315 10 HOH HOH . KB 8 HOH A 16 316 100 HOH HOH . KB 8 HOH A 17 317 120 HOH HOH . KB 8 HOH A 18 318 96 HOH HOH . KB 8 HOH A 19 319 40 HOH HOH . KB 8 HOH A 20 320 47 HOH HOH . KB 8 HOH A 21 321 57 HOH HOH . KB 8 HOH A 22 322 25 HOH HOH . KB 8 HOH A 23 323 54 HOH HOH . KB 8 HOH A 24 324 88 HOH HOH . KB 8 HOH A 25 325 75 HOH HOH . KB 8 HOH A 26 326 21 HOH HOH . KB 8 HOH A 27 327 62 HOH HOH . KB 8 HOH A 28 328 117 HOH HOH . KB 8 HOH A 29 329 61 HOH HOH . KB 8 HOH A 30 330 36 HOH HOH . KB 8 HOH A 31 331 68 HOH HOH . KB 8 HOH A 32 332 39 HOH HOH . KB 8 HOH A 33 333 8 HOH HOH . KB 8 HOH A 34 334 91 HOH HOH . KB 8 HOH A 35 335 78 HOH HOH . KB 8 HOH A 36 336 87 HOH HOH . KB 8 HOH A 37 337 80 HOH HOH . KB 8 HOH A 38 338 35 HOH HOH . KB 8 HOH A 39 339 124 HOH HOH . KB 8 HOH A 40 340 11 HOH HOH . LB 8 HOH B 1 301 129 HOH HOH . LB 8 HOH B 2 302 122 HOH HOH . LB 8 HOH B 3 303 53 HOH HOH . LB 8 HOH B 4 304 69 HOH HOH . LB 8 HOH B 5 305 13 HOH HOH . LB 8 HOH B 6 306 45 HOH HOH . LB 8 HOH B 7 307 86 HOH HOH . LB 8 HOH B 8 308 105 HOH HOH . LB 8 HOH B 9 309 2 HOH HOH . LB 8 HOH B 10 310 7 HOH HOH . LB 8 HOH B 11 311 89 HOH HOH . LB 8 HOH B 12 312 56 HOH HOH . LB 8 HOH B 13 313 58 HOH HOH . LB 8 HOH B 14 314 114 HOH HOH . LB 8 HOH B 15 315 102 HOH HOH . LB 8 HOH B 16 316 59 HOH HOH . LB 8 HOH B 17 317 116 HOH HOH . LB 8 HOH B 18 318 27 HOH HOH . LB 8 HOH B 19 319 67 HOH HOH . LB 8 HOH B 20 320 123 HOH HOH . LB 8 HOH B 21 321 95 HOH HOH . LB 8 HOH B 22 322 110 HOH HOH . LB 8 HOH B 23 323 94 HOH HOH . LB 8 HOH B 24 324 76 HOH HOH . LB 8 HOH B 25 325 41 HOH HOH . LB 8 HOH B 26 326 90 HOH HOH . LB 8 HOH B 27 327 127 HOH HOH . LB 8 HOH B 28 328 79 HOH HOH . LB 8 HOH B 29 329 52 HOH HOH . LB 8 HOH B 30 330 109 HOH HOH . MB 8 HOH C 1 301 6 HOH HOH . MB 8 HOH C 2 302 112 HOH HOH . MB 8 HOH C 3 303 1 HOH HOH . MB 8 HOH C 4 304 30 HOH HOH . MB 8 HOH C 5 305 77 HOH HOH . MB 8 HOH C 6 306 128 HOH HOH . MB 8 HOH C 7 307 44 HOH HOH . MB 8 HOH C 8 308 48 HOH HOH . MB 8 HOH C 9 309 19 HOH HOH . MB 8 HOH C 10 310 38 HOH HOH . MB 8 HOH C 11 311 31 HOH HOH . MB 8 HOH C 12 312 28 HOH HOH . MB 8 HOH C 13 313 55 HOH HOH . MB 8 HOH C 14 314 42 HOH HOH . MB 8 HOH C 15 315 71 HOH HOH . MB 8 HOH C 16 316 101 HOH HOH . MB 8 HOH C 17 317 73 HOH HOH . MB 8 HOH C 18 318 63 HOH HOH . MB 8 HOH C 19 319 43 HOH HOH . MB 8 HOH C 20 320 66 HOH HOH . MB 8 HOH C 21 321 93 HOH HOH . MB 8 HOH C 22 322 98 HOH HOH . MB 8 HOH C 23 323 107 HOH HOH . MB 8 HOH C 24 324 108 HOH HOH . MB 8 HOH C 25 325 84 HOH HOH . NB 8 HOH D 1 301 99 HOH HOH . NB 8 HOH D 2 302 70 HOH HOH . NB 8 HOH D 3 303 26 HOH HOH . NB 8 HOH D 4 304 119 HOH HOH . NB 8 HOH D 5 305 82 HOH HOH . NB 8 HOH D 6 306 24 HOH HOH . NB 8 HOH D 7 307 72 HOH HOH . NB 8 HOH D 8 308 81 HOH HOH . NB 8 HOH D 9 309 32 HOH HOH . NB 8 HOH D 10 310 50 HOH HOH . NB 8 HOH D 11 311 115 HOH HOH . NB 8 HOH D 12 312 83 HOH HOH . NB 8 HOH D 13 313 12 HOH HOH . NB 8 HOH D 14 314 14 HOH HOH . NB 8 HOH D 15 315 23 HOH HOH . NB 8 HOH D 16 316 33 HOH HOH . NB 8 HOH D 17 317 104 HOH HOH . NB 8 HOH D 18 318 18 HOH HOH . NB 8 HOH D 19 319 37 HOH HOH . NB 8 HOH D 20 320 49 HOH HOH . NB 8 HOH D 21 321 85 HOH HOH . NB 8 HOH D 22 322 4 HOH HOH . NB 8 HOH D 23 323 46 HOH HOH . NB 8 HOH D 24 324 51 HOH HOH . NB 8 HOH D 25 325 20 HOH HOH . NB 8 HOH D 26 326 106 HOH HOH . NB 8 HOH D 27 327 3 HOH HOH . NB 8 HOH D 28 328 17 HOH HOH . NB 8 HOH D 29 329 74 HOH HOH . NB 8 HOH D 30 330 92 HOH HOH . NB 8 HOH D 31 331 103 HOH HOH . NB 8 HOH D 32 332 64 HOH HOH . NB 8 HOH D 33 333 125 HOH HOH . NB 8 HOH D 34 334 113 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id JB _atom_site.label_entity_id 7 _atom_site.Cartn_x 12.763 _atom_site.Cartn_y 19.163 _atom_site.Cartn_z 35.214 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 86.57 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 219 _atom_site.auth_asym_id D _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #