data_6UIU # _model_server_result.job_id 683mx6ctp90H6F245xm5zw _model_server_result.datetime_utc '2024-12-01 19:41:27' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uiu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 6UIU # _exptl.entry_id 6UIU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 468.615 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-(2-{bis[(pyridin-2-yl)methyl]amino}ethyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UIU _cell.length_a 57.871 _cell.length_b 57.871 _cell.length_c 184.305 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UIU _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_665 -y+1,-x+1,-z 0 -1 0 -1 0 0 0 0 -1 57.871 57.871 0 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 57.871 57.871 0 4 'crystal symmetry operation' 15_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C24 H32 N6 O2 S' _chem_comp.formula_weight 468.615 _chem_comp.id QG7 _chem_comp.mon_nstd_flag . _chem_comp.name N-(2-{bis[(pyridin-2-yl)methyl]amino}ethyl)-5-[(3aS,4S,6aR)-2-oxohexahydro-1H-thieno[3,4-d]imidazol-4-yl]pentanamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C22 C21 QG7 doub 264 n y C22 N5 QG7 sing 265 n y C21 C20 QG7 sing 266 n y N5 C18 QG7 doub 267 n y C20 C19 QG7 doub 268 n y C18 C19 QG7 sing 269 n y C18 C17 QG7 sing 270 n n C11 N3 QG7 sing 271 n n C11 C12 QG7 sing 272 n n N3 C17 QG7 sing 273 n n N3 C23 QG7 sing 274 n n O1 C1 QG7 doub 275 n n C24 C23 QG7 sing 276 n n C24 N6 QG7 sing 277 n n C1 N6 QG7 sing 278 n n C1 C2 QG7 sing 279 n n N4 C12 QG7 doub 280 n y N4 C16 QG7 sing 281 n y C12 C13 QG7 sing 282 n y C2 C3 QG7 sing 283 n n C16 C15 QG7 doub 284 n y C13 C14 QG7 doub 285 n y C3 C4 QG7 sing 286 n n C15 C14 QG7 sing 287 n y C4 C5 QG7 sing 288 n n C5 C6 QG7 sing 289 n n C6 C10 QG7 sing 290 n n C6 S1 QG7 sing 291 n n N2 C10 QG7 sing 292 n n N2 C9 QG7 sing 293 n n C10 C8 QG7 sing 294 n n S1 C7 QG7 sing 295 n n C9 O2 QG7 doub 296 n n C9 N1 QG7 sing 297 n n C8 C7 QG7 sing 298 n n C8 N1 QG7 sing 299 n n C10 H1 QG7 sing 300 n n C15 H2 QG7 sing 301 n n C17 H3 QG7 sing 302 n n C17 H4 QG7 sing 303 n n C11 H5 QG7 sing 304 n n C11 H6 QG7 sing 305 n n C14 H7 QG7 sing 306 n n N1 H8 QG7 sing 307 n n N2 H9 QG7 sing 308 n n C8 H10 QG7 sing 309 n n C7 H11 QG7 sing 310 n n C7 H12 QG7 sing 311 n n C6 H13 QG7 sing 312 n n C5 H14 QG7 sing 313 n n C5 H15 QG7 sing 314 n n C4 H16 QG7 sing 315 n n C4 H17 QG7 sing 316 n n C3 H18 QG7 sing 317 n n C3 H19 QG7 sing 318 n n C2 H20 QG7 sing 319 n n C2 H21 QG7 sing 320 n n C24 H22 QG7 sing 321 n n C24 H23 QG7 sing 322 n n N6 H24 QG7 sing 323 n n C23 H25 QG7 sing 324 n n C23 H26 QG7 sing 325 n n C16 H28 QG7 sing 326 n n C13 H29 QG7 sing 327 n n C22 H30 QG7 sing 328 n n C21 H31 QG7 sing 329 n n C20 H32 QG7 sing 330 n n C19 H33 QG7 sing 331 n n # _atom_sites.entry_id 6UIU _atom_sites.fract_transf_matrix[1][1] 0.01728 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01728 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005426 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QG7 A 1 201 1 QG7 KM2 . C 3 HOH A 1 301 54 HOH HOH . C 3 HOH A 2 302 137 HOH HOH . C 3 HOH A 3 303 72 HOH HOH . C 3 HOH A 4 304 112 HOH HOH . C 3 HOH A 5 305 79 HOH HOH . C 3 HOH A 6 306 67 HOH HOH . C 3 HOH A 7 307 99 HOH HOH . C 3 HOH A 8 308 44 HOH HOH . C 3 HOH A 9 309 129 HOH HOH . C 3 HOH A 10 310 88 HOH HOH . C 3 HOH A 11 311 47 HOH HOH . C 3 HOH A 12 312 78 HOH HOH . C 3 HOH A 13 313 98 HOH HOH . C 3 HOH A 14 314 134 HOH HOH . C 3 HOH A 15 315 62 HOH HOH . C 3 HOH A 16 316 114 HOH HOH . C 3 HOH A 17 317 5 HOH HOH . C 3 HOH A 18 318 15 HOH HOH . C 3 HOH A 19 319 18 HOH HOH . C 3 HOH A 20 320 103 HOH HOH . C 3 HOH A 21 321 87 HOH HOH . C 3 HOH A 22 322 13 HOH HOH . C 3 HOH A 23 323 60 HOH HOH . C 3 HOH A 24 324 121 HOH HOH . C 3 HOH A 25 325 19 HOH HOH . C 3 HOH A 26 326 116 HOH HOH . C 3 HOH A 27 327 96 HOH HOH . C 3 HOH A 28 328 109 HOH HOH . C 3 HOH A 29 329 10 HOH HOH . C 3 HOH A 30 330 23 HOH HOH . C 3 HOH A 31 331 9 HOH HOH . C 3 HOH A 32 332 8 HOH HOH . C 3 HOH A 33 333 12 HOH HOH . C 3 HOH A 34 334 43 HOH HOH . C 3 HOH A 35 335 51 HOH HOH . C 3 HOH A 36 336 59 HOH HOH . C 3 HOH A 37 337 36 HOH HOH . C 3 HOH A 38 338 27 HOH HOH . C 3 HOH A 39 339 74 HOH HOH . C 3 HOH A 40 340 25 HOH HOH . C 3 HOH A 41 341 6 HOH HOH . C 3 HOH A 42 342 73 HOH HOH . C 3 HOH A 43 343 38 HOH HOH . C 3 HOH A 44 344 56 HOH HOH . C 3 HOH A 45 345 14 HOH HOH . C 3 HOH A 46 346 22 HOH HOH . C 3 HOH A 47 347 91 HOH HOH . C 3 HOH A 48 348 26 HOH HOH . C 3 HOH A 49 349 69 HOH HOH . C 3 HOH A 50 350 55 HOH HOH . C 3 HOH A 51 351 24 HOH HOH . C 3 HOH A 52 352 3 HOH HOH . C 3 HOH A 53 353 133 HOH HOH . C 3 HOH A 54 354 61 HOH HOH . C 3 HOH A 55 355 136 HOH HOH . C 3 HOH A 56 356 20 HOH HOH . C 3 HOH A 57 357 124 HOH HOH . C 3 HOH A 58 358 2 HOH HOH . C 3 HOH A 59 359 11 HOH HOH . C 3 HOH A 60 360 80 HOH HOH . C 3 HOH A 61 361 97 HOH HOH . C 3 HOH A 62 362 50 HOH HOH . C 3 HOH A 63 363 71 HOH HOH . C 3 HOH A 64 364 131 HOH HOH . C 3 HOH A 65 365 57 HOH HOH . C 3 HOH A 66 366 7 HOH HOH . C 3 HOH A 67 367 1 HOH HOH . C 3 HOH A 68 368 52 HOH HOH . C 3 HOH A 69 369 35 HOH HOH . C 3 HOH A 70 370 45 HOH HOH . C 3 HOH A 71 371 53 HOH HOH . C 3 HOH A 72 372 111 HOH HOH . C 3 HOH A 73 373 100 HOH HOH . C 3 HOH A 74 374 118 HOH HOH . C 3 HOH A 75 375 46 HOH HOH . C 3 HOH A 76 376 34 HOH HOH . C 3 HOH A 77 377 135 HOH HOH . C 3 HOH A 78 378 31 HOH HOH . C 3 HOH A 79 379 17 HOH HOH . C 3 HOH A 80 380 86 HOH HOH . C 3 HOH A 81 381 29 HOH HOH . C 3 HOH A 82 382 104 HOH HOH . C 3 HOH A 83 383 84 HOH HOH . C 3 HOH A 84 384 83 HOH HOH . C 3 HOH A 85 385 119 HOH HOH . C 3 HOH A 86 386 77 HOH HOH . C 3 HOH A 87 387 123 HOH HOH . C 3 HOH A 88 388 37 HOH HOH . C 3 HOH A 89 389 110 HOH HOH . C 3 HOH A 90 390 39 HOH HOH . C 3 HOH A 91 391 65 HOH HOH . C 3 HOH A 92 392 115 HOH HOH . C 3 HOH A 93 393 21 HOH HOH . C 3 HOH A 94 394 105 HOH HOH . C 3 HOH A 95 395 30 HOH HOH . C 3 HOH A 96 396 102 HOH HOH . C 3 HOH A 97 397 117 HOH HOH . C 3 HOH A 98 398 63 HOH HOH . C 3 HOH A 99 399 128 HOH HOH . C 3 HOH A 100 400 106 HOH HOH . C 3 HOH A 101 401 130 HOH HOH . C 3 HOH A 102 402 101 HOH HOH . C 3 HOH A 103 403 107 HOH HOH . C 3 HOH A 104 404 138 HOH HOH . C 3 HOH A 105 405 132 HOH HOH . C 3 HOH A 106 406 122 HOH HOH . C 3 HOH A 107 407 81 HOH HOH . C 3 HOH A 108 408 94 HOH HOH . C 3 HOH A 109 409 125 HOH HOH . C 3 HOH A 110 410 75 HOH HOH . C 3 HOH A 111 411 85 HOH HOH . C 3 HOH A 112 412 95 HOH HOH . C 3 HOH A 113 413 76 HOH HOH . C 3 HOH A 114 414 120 HOH HOH . C 3 HOH A 115 415 127 HOH HOH . C 3 HOH A 116 416 126 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 QG7 . . . B 2 17.599 29.33 -9.639 1 9.22 ? C10 QG7 201 A 1 HETATM 2 C C15 QG7 . . . B 2 27.981 25.65 -12.166 1 16.08 ? C15 QG7 201 A 1 HETATM 3 C C17 QG7 . . . B 2 24.341 27.807 -15.185 1 19.54 ? C17 QG7 201 A 1 HETATM 4 C C11 QG7 . . . B 2 25.115 25.569 -15.448 1 19.69 ? C11 QG7 201 A 1 HETATM 5 C C12 QG7 . . . B 2 26.077 25.629 -14.239 1 16.1 ? C12 QG7 201 A 1 HETATM 6 C C14 QG7 . . . B 2 26.773 24.939 -11.981 1 16.15 ? C14 QG7 201 A 1 HETATM 7 O O2 QG7 . . . B 2 14.394 29.645 -8.225 1 10.18 ? O2 QG7 201 A 1 HETATM 8 C C9 QG7 . . . B 2 15.585 29.526 -8.455 1 9.03 ? C9 QG7 201 A 1 HETATM 9 N N1 QG7 . . . B 2 16.522 29.68 -7.528 1 10.34 ? N1 QG7 201 A 1 HETATM 10 N N2 QG7 . . . B 2 16.086 29.326 -9.698 1 9.88 ? N2 QG7 201 A 1 HETATM 11 C C8 QG7 . . . B 2 17.905 29.584 -8.119 1 8.64 ? C8 QG7 201 A 1 HETATM 12 C C7 QG7 . . . B 2 18.598 28.297 -7.6 1 9.24 ? C7 QG7 201 A 1 HETATM 13 S S1 QG7 . . . B 2 18.047 26.904 -8.573 1 10.48 ? S1 QG7 201 A 1 HETATM 14 C C6 QG7 . . . B 2 18.137 27.974 -10.041 1 9.45 ? C6 QG7 201 A 1 HETATM 15 C C5 QG7 . . . B 2 17.614 27.387 -11.355 1 10.48 ? C5 QG7 201 A 1 HETATM 16 C C4 QG7 . . . B 2 18.46 26.231 -11.857 1 9.69 ? C4 QG7 201 A 1 HETATM 17 C C3 QG7 . . . B 2 17.76 25.548 -13.043 1 10.32 ? C3 QG7 201 A 1 HETATM 18 C C2 QG7 . . . B 2 18.612 24.492 -13.724 1 11.19 ? C2 QG7 201 A 1 HETATM 19 C C1 QG7 . . . B 2 19.908 25.026 -14.372 1 11.22 ? C1 QG7 201 A 1 HETATM 20 C C24 QG7 . . . B 2 22.191 24.74 -14.976 1 12.78 ? C24 QG7 201 A 1 HETATM 21 O O1 QG7 . . . B 2 19.888 26.056 -15.063 1 11.31 ? O1 QG7 201 A 1 HETATM 22 N N6 QG7 . . . B 2 21.067 24.301 -14.117 1 11.51 ? N6 QG7 201 A 1 HETATM 23 C C23 QG7 . . . B 2 22.924 25.918 -14.358 1 13.57 ? C23 QG7 201 A 1 HETATM 24 N N3 QG7 . . . B 2 23.927 26.416 -15.332 1 16.74 ? N3 QG7 201 A 1 HETATM 25 N N4 QG7 . . . B 2 27.238 26.315 -14.353 1 17.78 ? N4 QG7 201 A 1 HETATM 26 C C16 QG7 . . . B 2 28.186 26.324 -13.351 1 16.61 ? C16 QG7 201 A 1 HETATM 27 C C13 QG7 . . . B 2 25.841 24.932 -13.071 1 18.29 ? C13 QG7 201 A 1 HETATM 28 N N5 QG7 . . . B 2 22.244 28.37 -16.5 1 24.27 ? N5 QG7 201 A 1 HETATM 29 C C18 QG7 . . . B 2 23.399 28.804 -15.83 1 23.14 ? C18 QG7 201 A 1 HETATM 30 C C22 QG7 . . . B 2 21.415 29.299 -17.082 1 24.68 ? C22 QG7 201 A 1 HETATM 31 C C21 QG7 . . . B 2 21.765 30.686 -16.994 1 24.29 ? C21 QG7 201 A 1 HETATM 32 C C20 QG7 . . . B 2 22.95 31.117 -16.336 1 25.65 ? C20 QG7 201 A 1 HETATM 33 C C19 QG7 . . . B 2 23.807 30.137 -15.738 1 20.99 ? C19 QG7 201 A 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 33 #