data_6UIW
#
_model_server_result.job_id            lBEQG7WjqiYgzGsZyDXyrA 
_model_server_result.datetime_utc      '2025-08-31 08:49:33' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uiw 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"P","auth_seq_id":501}' 
#
_entry.id    6UIW 
#
_exptl.entry_id    6UIW 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              559.525 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'ruthenium(6+) azanide pentaamino(oxido)ruthenium (1/4/2)' 
_entity.pdbx_number_of_molecules    11 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    undecameric 
_pdbx_struct_assembly.oligomeric_count      11 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 L N N 
? 2 M N N 
? 2 N N N 
? 2 O N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
? 2 T N N 
? 2 U N N 
? 2 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 46 A CYS 46 1_555 A SG CYS 130 A CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 48 A CYS 48 1_555 A SG CYS 162 A CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf3 B SG CYS 46 B CYS 46 1_555 B SG CYS 130 B CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf4 B SG CYS 48 B CYS 48 1_555 B SG CYS 162 B CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf5 C SG CYS 46 C CYS 46 1_555 C SG CYS 130 C CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf6 C SG CYS 48 C CYS 48 1_555 C SG CYS 162 C CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf7 D SG CYS 46 D CYS 46 1_555 D SG CYS 130 D CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf8 D SG CYS 48 D CYS 48 1_555 D SG CYS 162 D CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf9 E SG CYS 46 E CYS 46 1_555 E SG CYS 130 E CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf10 E SG CYS 48 E CYS 48 1_555 E SG CYS 162 E CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf11 F SG CYS 46 F CYS 46 1_555 F SG CYS 130 F CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf12 F SG CYS 48 F CYS 48 1_555 F SG CYS 162 F CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf13 G SG CYS 46 G CYS 46 1_555 G SG CYS 130 G CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf14 G SG CYS 48 G CYS 48 1_555 G SG CYS 162 G CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf15 H SG CYS 46 H CYS 46 1_555 H SG CYS 130 H CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf16 H SG CYS 48 H CYS 48 1_555 H SG CYS 162 H CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf17 I SG CYS 46 I CYS 46 1_555 I SG CYS 130 I CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf18 I SG CYS 48 I CYS 48 1_555 I SG CYS 162 I CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
disulf ? disulf19 J SG CYS 46 J CYS 46 1_555 J SG CYS 130 J CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf20 J SG CYS 48 J CYS 48 1_555 J SG CYS 162 J CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.022 ? 
disulf ? disulf21 K SG CYS 46 K CYS 46 1_555 K SG CYS 130 K CYS 130 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? 
disulf ? disulf22 K SG CYS 48 K CYS 48 1_555 K SG CYS 162 K CYS 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
#
_chem_comp.formula           'H28 N14 O2 Ru3' 
_chem_comp.formula_weight    559.525 
_chem_comp.id                R2R 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ruthenium(6+) azanide pentaamino(oxido)ruthenium (1/4/2)' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N08 RU3 R2R sing 275 n n 
N11 RU3 R2R sing 276 n n 
N10 RU3 R2R sing 277 n n 
RU3 N09 R2R sing 278 n n 
RU3 N12 R2R sing 279 n n 
RU3 O06 R2R sing 280 n n 
O06 RU2 R2R sing 281 n n 
N01 RU2 R2R sing 282 n n 
N05 RU2 R2R sing 283 n n 
RU2 N04 R2R sing 284 n n 
RU2 N03 R2R sing 285 n n 
RU2 O13 R2R sing 286 n n 
O13 RU1 R2R sing 287 n n 
N18 RU1 R2R sing 288 n n 
N16 RU1 R2R sing 289 n n 
RU1 N17 R2R sing 290 n n 
RU1 N19 R2R sing 291 n n 
RU1 N15 R2R sing 292 n n 
N01 H1 R2R sing 293 n n 
N01 H2 R2R sing 294 n n 
N03 H3 R2R sing 295 n n 
N03 H4 R2R sing 296 n n 
N04 H5 R2R sing 297 n n 
N04 H6 R2R sing 298 n n 
N05 H7 R2R sing 299 n n 
N05 H8 R2R sing 300 n n 
N08 H9 R2R sing 301 n n 
N08 H10 R2R sing 302 n n 
N09 H11 R2R sing 303 n n 
N09 H12 R2R sing 304 n n 
N10 H13 R2R sing 305 n n 
N10 H14 R2R sing 306 n n 
N11 H15 R2R sing 307 n n 
N11 H16 R2R sing 308 n n 
N12 H17 R2R sing 309 n n 
N12 H18 R2R sing 310 n n 
N15 H19 R2R sing 311 n n 
N15 H20 R2R sing 312 n n 
N16 H21 R2R sing 313 n n 
N16 H22 R2R sing 314 n n 
N17 H23 R2R sing 315 n n 
N17 H24 R2R sing 316 n n 
N18 H25 R2R sing 317 n n 
N18 H26 R2R sing 318 n n 
N19 H27 R2R sing 319 n n 
N19 H28 R2R sing 320 n n 
#
_atom_sites.entry_id                     6UIW 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
L 2 R2R A 1 501 501 R2R R2R . 
M 2 R2R B 1 501 501 R2R R2R . 
N 2 R2R C 1 501 501 R2R R2R . 
O 2 R2R D 1 501 501 R2R R2R . 
P 2 R2R E 1 501 501 R2R R2R . 
Q 2 R2R F 1 501 501 R2R R2R . 
R 2 R2R G 1 501 501 R2R R2R . 
S 2 R2R H 1 501 501 R2R R2R . 
T 2 R2R I 1 501 501 R2R R2R . 
U 2 R2R J 1 501 501 R2R R2R . 
V 2 R2R K 1 501 501 R2R R2R . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N01 R2R . . . P 2 187.231 207.1 165.357 1 20 ? N01 R2R 501 E 1 
HETATM 2 N N03 R2R . . . P 2 184.964 204.317 167.29 1 20 ? N03 R2R 501 E 1 
HETATM 3 N N04 R2R . . . P 2 184.665 207.117 166.668 1 20 ? N04 R2R 501 E 1 
HETATM 4 N N05 R2R . . . P 2 187.532 204.3 165.979 1 20 ? N05 R2R 501 E 1 
HETATM 5 O O06 R2R . . . P 2 185.283 205.268 164.734 1 20 ? O06 R2R 501 E 1 
HETATM 6 N N08 R2R . . . P 2 183.565 204.339 161.383 1 20 ? N08 R2R 501 E 1 
HETATM 7 N N09 R2R . . . P 2 183.035 206.234 163.488 1 20 ? N09 R2R 501 E 1 
HETATM 8 N N10 R2R . . . P 2 185.902 203.419 162.799 1 20 ? N10 R2R 501 E 1 
HETATM 9 N N11 R2R . . . P 2 185.603 206.218 162.178 1 20 ? N11 R2R 501 E 1 
HETATM 10 N N12 R2R . . . P 2 183.335 203.435 164.112 1 20 ? N12 R2R 501 E 1 
HETATM 11 O O13 R2R . . . P 2 186.914 206.15 167.914 1 20 ? O13 R2R 501 E 1 
HETATM 12 N N15 R2R . . . P 2 188.632 207.079 171.265 1 20 ? N15 R2R 501 E 1 
HETATM 13 N N16 R2R . . . P 2 189.162 205.182 169.158 1 20 ? N16 R2R 501 E 1 
HETATM 14 N N17 R2R . . . P 2 186.294 207.998 169.847 1 20 ? N17 R2R 501 E 1 
HETATM 15 N N18 R2R . . . P 2 188.862 207.982 168.537 1 20 ? N18 R2R 501 E 1 
HETATM 16 N N19 R2R . . . P 2 186.594 205.199 170.47 1 20 ? N19 R2R 501 E 1 
HETATM 17 RU RU2 R2R . . . P 2 186.099 205.709 166.324 1 20 ? RU2 R2R 501 E 1 
HETATM 18 RU RU3 R2R . . . P 2 184.469 204.827 163.145 1 20 ? RU3 R2R 501 E 1 
HETATM 19 RU RU1 R2R . . . P 2 187.728 206.59 169.503 1 20 ? RU1 R2R 501 E 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    14 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           19 
#