data_6UJ8 # _model_server_result.job_id gwp3kYAqVWSSKsZisIbb8w _model_server_result.datetime_utc '2024-12-22 06:28:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uj8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"O","auth_seq_id":301}' # _entry.id 6UJ8 # _exptl.entry_id 6UJ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 194.226 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TETRAETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 107.65 _cell.angle_gamma 90 _cell.entry_id 6UJ8 _cell.length_a 67.69 _cell.length_b 70.48 _cell.length_c 88.146 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UJ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA trimeric 3 author_and_software_defined_assembly 1 PISA trimeric 3 author_and_software_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,G,H,I,J,K,L,M,N,S,T,U 1 1 D,E,F,O,P,Q,R,V,W,X 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id O _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 102 A CYS 101 1_555 A SG CYS 165 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? disulf ? disulf2 A SG CYS 204 A CYS 203 1_555 A SG CYS 260 A CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? disulf ? disulf3 B SG CYS 45 B CYS 45 1_555 B SG CYS 100 B CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf4 D SG CYS 102 D CYS 101 1_555 D SG CYS 165 D CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? disulf ? disulf5 D SG CYS 204 D CYS 203 1_555 D SG CYS 260 D CYS 259 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? disulf ? disulf6 E SG CYS 45 E CYS 45 1_555 E SG CYS 100 E CYS 100 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? # _chem_comp.formula 'C8 H18 O5' _chem_comp.formula_weight 194.226 _chem_comp.id PG4 _chem_comp.mon_nstd_flag . _chem_comp.name 'TETRAETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C1 PG4 sing 290 n n O1 HO1 PG4 sing 291 n n C1 C2 PG4 sing 292 n n C1 H11 PG4 sing 293 n n C1 H12 PG4 sing 294 n n C2 O2 PG4 sing 295 n n C2 H21 PG4 sing 296 n n C2 H22 PG4 sing 297 n n O2 C3 PG4 sing 298 n n C3 C4 PG4 sing 299 n n C3 H31 PG4 sing 300 n n C3 H32 PG4 sing 301 n n C4 O3 PG4 sing 302 n n C4 H41 PG4 sing 303 n n C4 H42 PG4 sing 304 n n O3 C5 PG4 sing 305 n n C5 C6 PG4 sing 306 n n C5 H51 PG4 sing 307 n n C5 H52 PG4 sing 308 n n C6 O4 PG4 sing 309 n n C6 H61 PG4 sing 310 n n C6 H62 PG4 sing 311 n n O4 C7 PG4 sing 312 n n C7 C8 PG4 sing 313 n n C7 H71 PG4 sing 314 n n C7 H72 PG4 sing 315 n n C8 O5 PG4 sing 316 n n C8 H81 PG4 sing 317 n n C8 H82 PG4 sing 318 n n O5 HO5 PG4 sing 319 n n # _atom_sites.entry_id 6UJ8 _atom_sites.fract_transf_matrix[1][1] 0.014773 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.004699 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014188 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011905 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 PEG A 1 301 301 PEG PEG . H 5 1PE A 1 302 401 1PE 1PE . I 4 PEG A 1 303 501 PEG PEG . J 6 SO4 A 1 304 1 SO4 SO4 . K 6 SO4 A 1 305 3 SO4 SO4 . L 4 PEG B 1 201 201 PEG PEG . M 7 PGE B 1 202 301 PGE PGE . N 4 PEG B 1 203 401 PEG PEG . O 8 PG4 D 1 301 301 PG4 PG4 . P 4 PEG D 1 302 401 PEG PEG . Q 6 SO4 D 1 303 2 SO4 SO4 . R 4 PEG E 1 201 201 PEG PEG . S 9 HOH A 1 401 112 HOH HOH . S 9 HOH A 2 402 125 HOH HOH . S 9 HOH A 3 403 114 HOH HOH . S 9 HOH A 4 404 6 HOH HOH . S 9 HOH A 5 405 74 HOH HOH . S 9 HOH A 6 406 121 HOH HOH . S 9 HOH A 7 407 69 HOH HOH . S 9 HOH A 8 408 46 HOH HOH . S 9 HOH A 9 409 116 HOH HOH . S 9 HOH A 10 410 39 HOH HOH . S 9 HOH A 11 411 3 HOH HOH . S 9 HOH A 12 412 85 HOH HOH . S 9 HOH A 13 413 68 HOH HOH . S 9 HOH A 14 414 70 HOH HOH . S 9 HOH A 15 415 222 HOH HOH . S 9 HOH A 16 416 105 HOH HOH . S 9 HOH A 17 417 65 HOH HOH . S 9 HOH A 18 418 72 HOH HOH . S 9 HOH A 19 419 45 HOH HOH . S 9 HOH A 20 420 1 HOH HOH . S 9 HOH A 21 421 40 HOH HOH . S 9 HOH A 22 422 113 HOH HOH . S 9 HOH A 23 423 83 HOH HOH . S 9 HOH A 24 424 62 HOH HOH . S 9 HOH A 25 425 63 HOH HOH . S 9 HOH A 26 426 37 HOH HOH . S 9 HOH A 27 427 81 HOH HOH . S 9 HOH A 28 428 79 HOH HOH . S 9 HOH A 29 429 73 HOH HOH . S 9 HOH A 30 430 40 HOH HOH . S 9 HOH A 31 431 73 HOH HOH . S 9 HOH A 32 432 124 HOH HOH . S 9 HOH A 33 433 4 HOH HOH . S 9 HOH A 34 434 5 HOH HOH . S 9 HOH A 35 435 18 HOH HOH . S 9 HOH A 36 436 186 HOH HOH . S 9 HOH A 37 437 52 HOH HOH . S 9 HOH A 38 438 20 HOH HOH . S 9 HOH A 39 439 41 HOH HOH . S 9 HOH A 40 440 117 HOH HOH . S 9 HOH A 41 441 122 HOH HOH . S 9 HOH A 42 442 82 HOH HOH . S 9 HOH A 43 443 35 HOH HOH . S 9 HOH A 44 444 71 HOH HOH . S 9 HOH A 45 445 43 HOH HOH . S 9 HOH A 46 446 2 HOH HOH . S 9 HOH A 47 447 115 HOH HOH . S 9 HOH A 48 448 123 HOH HOH . S 9 HOH A 49 449 120 HOH HOH . S 9 HOH A 50 450 55 HOH HOH . S 9 HOH A 51 451 54 HOH HOH . S 9 HOH A 52 452 25 HOH HOH . S 9 HOH A 53 453 76 HOH HOH . S 9 HOH A 54 454 19 HOH HOH . S 9 HOH A 55 455 129 HOH HOH . S 9 HOH A 56 456 78 HOH HOH . S 9 HOH A 57 457 113 HOH HOH . S 9 HOH A 58 458 16 HOH HOH . S 9 HOH A 59 459 56 HOH HOH . T 9 HOH B 1 301 126 HOH HOH . T 9 HOH B 2 302 75 HOH HOH . T 9 HOH B 3 303 8 HOH HOH . T 9 HOH B 4 304 44 HOH HOH . T 9 HOH B 5 305 38 HOH HOH . T 9 HOH B 6 306 89 HOH HOH . T 9 HOH B 7 307 88 HOH HOH . T 9 HOH B 8 308 138 HOH HOH . T 9 HOH B 9 309 86 HOH HOH . T 9 HOH B 10 310 87 HOH HOH . T 9 HOH B 11 311 24 HOH HOH . T 9 HOH B 12 312 80 HOH HOH . T 9 HOH B 13 313 128 HOH HOH . T 9 HOH B 14 314 90 HOH HOH . T 9 HOH B 15 315 127 HOH HOH . T 9 HOH B 16 316 23 HOH HOH . T 9 HOH B 17 317 56 HOH HOH . T 9 HOH B 18 318 13 HOH HOH . T 9 HOH B 19 319 131 HOH HOH . T 9 HOH B 20 320 129 HOH HOH . U 9 HOH C 1 101 58 HOH HOH . V 9 HOH D 1 401 99 HOH HOH . V 9 HOH D 2 402 10 HOH HOH . V 9 HOH D 3 403 92 HOH HOH . V 9 HOH D 4 404 12 HOH HOH . V 9 HOH D 5 405 98 HOH HOH . V 9 HOH D 6 406 103 HOH HOH . V 9 HOH D 7 407 95 HOH HOH . V 9 HOH D 8 408 162 HOH HOH . V 9 HOH D 9 409 97 HOH HOH . V 9 HOH D 10 410 28 HOH HOH . V 9 HOH D 11 411 100 HOH HOH . V 9 HOH D 12 412 59 HOH HOH . V 9 HOH D 13 413 22 HOH HOH . V 9 HOH D 14 414 63 HOH HOH . V 9 HOH D 15 415 114 HOH HOH . V 9 HOH D 16 416 107 HOH HOH . V 9 HOH D 17 417 28 HOH HOH . V 9 HOH D 18 418 7 HOH HOH . V 9 HOH D 19 419 47 HOH HOH . V 9 HOH D 20 420 115 HOH HOH . V 9 HOH D 21 421 47 HOH HOH . V 9 HOH D 22 422 48 HOH HOH . V 9 HOH D 23 423 31 HOH HOH . V 9 HOH D 24 424 91 HOH HOH . V 9 HOH D 25 425 9 HOH HOH . V 9 HOH D 26 426 50 HOH HOH . V 9 HOH D 27 427 106 HOH HOH . V 9 HOH D 28 428 9 HOH HOH . V 9 HOH D 29 429 22 HOH HOH . V 9 HOH D 30 430 135 HOH HOH . V 9 HOH D 31 431 60 HOH HOH . V 9 HOH D 32 432 105 HOH HOH . V 9 HOH D 33 433 13 HOH HOH . V 9 HOH D 34 434 50 HOH HOH . V 9 HOH D 35 435 78 HOH HOH . V 9 HOH D 36 436 120 HOH HOH . V 9 HOH D 37 437 14 HOH HOH . V 9 HOH D 38 438 26 HOH HOH . V 9 HOH D 39 439 42 HOH HOH . V 9 HOH D 40 440 29 HOH HOH . V 9 HOH D 41 441 53 HOH HOH . V 9 HOH D 42 442 130 HOH HOH . V 9 HOH D 43 443 66 HOH HOH . V 9 HOH D 44 444 32 HOH HOH . V 9 HOH D 45 445 109 HOH HOH . V 9 HOH D 46 446 232 HOH HOH . V 9 HOH D 47 447 52 HOH HOH . V 9 HOH D 48 448 108 HOH HOH . V 9 HOH D 49 449 65 HOH HOH . V 9 HOH D 50 450 15 HOH HOH . V 9 HOH D 51 451 77 HOH HOH . V 9 HOH D 52 452 131 HOH HOH . W 9 HOH E 1 301 137 HOH HOH . W 9 HOH E 2 302 136 HOH HOH . W 9 HOH E 3 303 34 HOH HOH . W 9 HOH E 4 304 1 HOH HOH . W 9 HOH E 5 305 23 HOH HOH . W 9 HOH E 6 306 8 HOH HOH . W 9 HOH E 7 307 110 HOH HOH . W 9 HOH E 8 308 136 HOH HOH . W 9 HOH E 9 309 53 HOH HOH . W 9 HOH E 10 310 32 HOH HOH . W 9 HOH E 11 311 31 HOH HOH . W 9 HOH E 12 312 133 HOH HOH . W 9 HOH E 13 313 134 HOH HOH . W 9 HOH E 14 314 96 HOH HOH . W 9 HOH E 15 315 84 HOH HOH . W 9 HOH E 16 316 106 HOH HOH . W 9 HOH E 17 317 48 HOH HOH . W 9 HOH E 18 318 7 HOH HOH . W 9 HOH E 19 319 111 HOH HOH . W 9 HOH E 20 320 11 HOH HOH . W 9 HOH E 21 321 90 HOH HOH . W 9 HOH E 22 322 43 HOH HOH . W 9 HOH E 23 323 104 HOH HOH . W 9 HOH E 24 324 46 HOH HOH . W 9 HOH E 25 325 49 HOH HOH . W 9 HOH E 26 326 29 HOH HOH . W 9 HOH E 27 327 36 HOH HOH . W 9 HOH E 28 328 27 HOH HOH . W 9 HOH E 29 329 71 HOH HOH . W 9 HOH E 30 330 240 HOH HOH . W 9 HOH E 31 331 141 HOH HOH . W 9 HOH E 32 332 61 HOH HOH . W 9 HOH E 33 333 233 HOH HOH . W 9 HOH E 34 334 241 HOH HOH . X 9 HOH F 1 101 11 HOH HOH . X 9 HOH F 2 102 17 HOH HOH . X 9 HOH F 3 103 102 HOH HOH . X 9 HOH F 4 104 93 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 PG4 . . . O 8 -22.807 -27.063 20.248 1 79.16 ? O1 PG4 301 D 1 HETATM 2 C C1 PG4 . . . O 8 -22.061 -28.086 19.615 1 73.6 ? C1 PG4 301 D 1 HETATM 3 C C2 PG4 . . . O 8 -21.475 -27.624 18.322 1 71.8 ? C2 PG4 301 D 1 HETATM 4 O O2 PG4 . . . O 8 -20.368 -26.766 18.577 1 64.03 ? O2 PG4 301 D 1 HETATM 5 C C3 PG4 . . . O 8 -19.567 -26.534 17.429 1 63.9 ? C3 PG4 301 D 1 HETATM 6 C C4 PG4 . . . O 8 -20.201 -25.51 16.584 1 61.82 ? C4 PG4 301 D 1 HETATM 7 O O3 PG4 . . . O 8 -19.577 -24.267 16.841 1 60.67 ? O3 PG4 301 D 1 HETATM 8 C C5 PG4 . . . O 8 -19.836 -23.301 15.823 1 67.29 ? C5 PG4 301 D 1 HETATM 9 C C6 PG4 . . . O 8 -21.056 -22.477 16.157 1 63.14 ? C6 PG4 301 D 1 HETATM 10 O O4 PG4 . . . O 8 -21.794 -22.201 14.966 1 63.08 ? O4 PG4 301 D 1 HETATM 11 C C7 PG4 . . . O 8 -21.281 -21.12 14.191 1 60.55 ? C7 PG4 301 D 1 HETATM 12 C C8 PG4 . . . O 8 -20.106 -21.576 13.386 1 59.25 ? C8 PG4 301 D 1 HETATM 13 O O5 PG4 . . . O 8 -19.549 -20.544 12.592 1 59.17 ? O5 PG4 301 D 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 281 _model_server_stats.encode_time_ms 22 _model_server_stats.element_count 13 #