data_6UJD # _model_server_result.job_id Do5uO4O2oK8F5q6sIYQA3Q _model_server_result.datetime_utc '2025-05-20 07:06:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ujd # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":506}' # _entry.id 6UJD # _exptl.entry_id 6UJD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 178.226 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UJD _cell.length_a 78.26 _cell.length_b 78.26 _cell.length_c 208.9 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UJD _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_555 -y,-x,-z+1/2 0 -1 0 -1 0 0 0 0 -1 0 0 104.45 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id G _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 37 A CYS 29 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.365 ? metalc ? metalc2 A SG CYS 233 A CYS 225 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.356 ? metalc ? metalc3 A NE2 HIS 258 A HIS 250 1_555 B ZN ZN . A ZN 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? # _chem_comp.formula 'C8 H18 O4' _chem_comp.formula_weight 178.226 _chem_comp.id PG5 _chem_comp.mon_nstd_flag . _chem_comp.name 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PG5 sing 246 n n C1 H11 PG5 sing 247 n n C1 H12 PG5 sing 248 n n C1 H13 PG5 sing 249 n n O1 C2 PG5 sing 250 n n C2 C3 PG5 sing 251 n n C2 H21 PG5 sing 252 n n C2 H22 PG5 sing 253 n n C3 O2 PG5 sing 254 n n C3 H31 PG5 sing 255 n n C3 H32 PG5 sing 256 n n O2 C4 PG5 sing 257 n n C4 C5 PG5 sing 258 n n C4 H41 PG5 sing 259 n n C4 H42 PG5 sing 260 n n C5 O3 PG5 sing 261 n n C5 H51 PG5 sing 262 n n C5 H52 PG5 sing 263 n n O3 C6 PG5 sing 264 n n C6 C7 PG5 sing 265 n n C6 H61 PG5 sing 266 n n C6 H62 PG5 sing 267 n n C7 O4 PG5 sing 268 n n C7 H71 PG5 sing 269 n n C7 H72 PG5 sing 270 n n O4 C8 PG5 sing 271 n n C8 H81 PG5 sing 272 n n C8 H82 PG5 sing 273 n n C8 H83 PG5 sing 274 n n # _atom_sites.entry_id 6UJD _atom_sites.fract_transf_matrix[1][1] 0.012778 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012778 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004787 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ZN A 1 501 500 ZN ZN . C 3 CL A 1 502 501 CL CL . D 3 CL A 1 503 502 CL CL . E 3 CL A 1 504 503 CL CL . F 4 PO4 A 1 505 510 PO4 PO4 . G 5 PG5 A 1 506 601 PG5 PG5 . H 6 EDO A 1 507 701 EDO EDO . I 7 HOH A 1 601 12 HOH HOH . I 7 HOH A 2 602 150 HOH HOH . I 7 HOH A 3 603 11 HOH HOH . I 7 HOH A 4 604 141 HOH HOH . I 7 HOH A 5 605 99 HOH HOH . I 7 HOH A 6 606 57 HOH HOH . I 7 HOH A 7 607 125 HOH HOH . I 7 HOH A 8 608 135 HOH HOH . I 7 HOH A 9 609 36 HOH HOH . I 7 HOH A 10 610 122 HOH HOH . I 7 HOH A 11 611 134 HOH HOH . I 7 HOH A 12 612 48 HOH HOH . I 7 HOH A 13 613 38 HOH HOH . I 7 HOH A 14 614 128 HOH HOH . I 7 HOH A 15 615 61 HOH HOH . I 7 HOH A 16 616 92 HOH HOH . I 7 HOH A 17 617 108 HOH HOH . I 7 HOH A 18 618 28 HOH HOH . I 7 HOH A 19 619 20 HOH HOH . I 7 HOH A 20 620 24 HOH HOH . I 7 HOH A 21 621 114 HOH HOH . I 7 HOH A 22 622 16 HOH HOH . I 7 HOH A 23 623 4 HOH HOH . I 7 HOH A 24 624 35 HOH HOH . I 7 HOH A 25 625 40 HOH HOH . I 7 HOH A 26 626 5 HOH HOH . I 7 HOH A 27 627 39 HOH HOH . I 7 HOH A 28 628 88 HOH HOH . I 7 HOH A 29 629 160 HOH HOH . I 7 HOH A 30 630 10 HOH HOH . I 7 HOH A 31 631 19 HOH HOH . I 7 HOH A 32 632 23 HOH HOH . I 7 HOH A 33 633 60 HOH HOH . I 7 HOH A 34 634 14 HOH HOH . I 7 HOH A 35 635 131 HOH HOH . I 7 HOH A 36 636 1 HOH HOH . I 7 HOH A 37 637 53 HOH HOH . I 7 HOH A 38 638 41 HOH HOH . I 7 HOH A 39 639 13 HOH HOH . I 7 HOH A 40 640 7 HOH HOH . I 7 HOH A 41 641 27 HOH HOH . I 7 HOH A 42 642 17 HOH HOH . I 7 HOH A 43 643 3 HOH HOH . I 7 HOH A 44 644 96 HOH HOH . I 7 HOH A 45 645 58 HOH HOH . I 7 HOH A 46 646 46 HOH HOH . I 7 HOH A 47 647 15 HOH HOH . I 7 HOH A 48 648 62 HOH HOH . I 7 HOH A 49 649 9 HOH HOH . I 7 HOH A 50 650 66 HOH HOH . I 7 HOH A 51 651 145 HOH HOH . I 7 HOH A 52 652 115 HOH HOH . I 7 HOH A 53 653 8 HOH HOH . I 7 HOH A 54 654 65 HOH HOH . I 7 HOH A 55 655 109 HOH HOH . I 7 HOH A 56 656 123 HOH HOH . I 7 HOH A 57 657 45 HOH HOH . I 7 HOH A 58 658 120 HOH HOH . I 7 HOH A 59 659 132 HOH HOH . I 7 HOH A 60 660 95 HOH HOH . I 7 HOH A 61 661 156 HOH HOH . I 7 HOH A 62 662 18 HOH HOH . I 7 HOH A 63 663 86 HOH HOH . I 7 HOH A 64 664 29 HOH HOH . I 7 HOH A 65 665 49 HOH HOH . I 7 HOH A 66 666 87 HOH HOH . I 7 HOH A 67 667 33 HOH HOH . I 7 HOH A 68 668 72 HOH HOH . I 7 HOH A 69 669 101 HOH HOH . I 7 HOH A 70 670 63 HOH HOH . I 7 HOH A 71 671 163 HOH HOH . I 7 HOH A 72 672 144 HOH HOH . I 7 HOH A 73 673 75 HOH HOH . I 7 HOH A 74 674 71 HOH HOH . I 7 HOH A 75 675 155 HOH HOH . I 7 HOH A 76 676 50 HOH HOH . I 7 HOH A 77 677 153 HOH HOH . I 7 HOH A 78 678 143 HOH HOH . I 7 HOH A 79 679 25 HOH HOH . I 7 HOH A 80 680 80 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PG5 . . . G 5 -32.206 6.223 55.051 1 113.42 ? C1 PG5 506 A 1 HETATM 2 O O1 PG5 . . . G 5 -31.387 6.99 55.925 1 120 ? O1 PG5 506 A 1 HETATM 3 C C2 PG5 . . . G 5 -32.059 7.409 57.101 1 123.25 ? C2 PG5 506 A 1 HETATM 4 C C3 PG5 . . . G 5 -32.419 6.245 57.975 1 129.37 ? C3 PG5 506 A 1 HETATM 5 O O2 PG5 . . . G 5 -33.755 6.406 58.441 1 132.47 ? O2 PG5 506 A 1 HETATM 6 C C4 PG5 . . . G 5 -34.169 5.393 59.352 1 129.23 ? C4 PG5 506 A 1 HETATM 7 C C5 PG5 . . . G 5 -33.414 5.522 60.642 1 126.53 ? C5 PG5 506 A 1 HETATM 8 O O3 PG5 . . . G 5 -33.734 6.745 61.299 1 126.24 ? O3 PG5 506 A 1 HETATM 9 C C6 PG5 . . . G 5 -34.521 6.558 62.473 1 126.31 ? C6 PG5 506 A 1 HETATM 10 C C7 PG5 . . . G 5 -34.515 7.812 63.302 1 123.18 ? C7 PG5 506 A 1 HETATM 11 O O4 PG5 . . . G 5 -35.444 7.744 64.379 1 121.07 ? O4 PG5 506 A 1 HETATM 12 C C8 PG5 . . . G 5 -35.278 6.624 65.239 1 117.24 ? C8 PG5 506 A 1 # _model_server_stats.io_time_ms 30 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 16 _model_server_stats.query_time_ms 249 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 12 #