data_6UK1 # _model_server_result.job_id jQEYk5rKjuj6Ji8ycdl9Ew _model_server_result.datetime_utc '2024-12-18 02:06:41' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uk1 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":1501}' # _entry.id 6UK1 # _exptl.entry_id 6UK1 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 507.181 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.57 _cell.angle_gamma 90 _cell.entry_id 6UK1 _cell.length_a 95.063 _cell.length_b 60.132 _cell.length_c 105.16 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UK1 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id PISA monomeric 1 author_and_software_defined_assembly 1 PISA monomeric 1 author_and_software_defined_assembly 2 PISA monomeric 1 author_and_software_defined_assembly 3 PISA monomeric 1 author_and_software_defined_assembly 4 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,E,F,M 1 1 B,G,H,N 2 1 C,I,J,O 3 1 D,K,L,P 4 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 G N N ? 2 I N N ? 2 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 50 A SER 1251 1_555 F MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc2 E O1G ATP . A ATP 1501 1_555 F MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc3 E O1B ATP . A ATP 1501 1_555 F MG MG . A MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.381 ? metalc ? metalc4 F MG MG . A MG 1502 1_555 M O HOH . A HOH 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc5 F MG MG . A MG 1502 1_555 M O HOH . A HOH 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.074 ? metalc ? metalc6 F MG MG . A MG 1502 1_555 K O3G ATP . D ATP 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? metalc ? metalc7 F MG MG . A MG 1502 1_555 P O HOH . D HOH 1612 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.067 ? metalc ? metalc8 B OG SER 50 B SER 1251 1_555 H MG MG . B MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc9 B OD1 ASP 169 B ASP 1370 1_555 H MG MG . B MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc10 B OD2 ASP 169 B ASP 1370 1_555 H MG MG . B MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc11 B OE2 GLU 170 B GLU 1371 1_555 H MG MG . B MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.257 ? metalc ? metalc12 G O1G ATP . B ATP 1501 1_555 H MG MG . B MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc13 G O1B ATP . B ATP 1501 1_555 H MG MG . B MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.919 ? metalc ? metalc14 G O3G ATP . B ATP 1501 1_555 J MG MG . C MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.968 ? metalc ? metalc15 H MG MG . B MG 1502 1_555 N O HOH . B HOH 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc16 H MG MG . B MG 1502 1_555 O O HOH . C HOH 1605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.08 ? metalc ? metalc17 C OG SER 50 C SER 1251 1_555 J MG MG . C MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.16 ? metalc ? metalc18 I O2G ATP . C ATP 1501 1_555 J MG MG . C MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? metalc ? metalc19 I O1B ATP . C ATP 1501 1_555 J MG MG . C MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.364 ? metalc ? metalc20 I O3B ATP . C ATP 1501 1_555 J MG MG . C MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.513 ? metalc ? metalc21 I O1A ATP . C ATP 1501 1_555 J MG MG . C MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.877 ? metalc ? metalc22 J MG MG . C MG 1502 1_555 O O HOH . C HOH 1601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc23 J MG MG . C MG 1502 1_555 O O HOH . C HOH 1608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc24 D OG SER 50 D SER 1251 1_555 L MG MG . D MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.175 ? metalc ? metalc25 K O2G ATP . D ATP 1501 1_555 L MG MG . D MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc26 K O1B ATP . D ATP 1501 1_555 L MG MG . D MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc27 K O1A ATP . D ATP 1501 1_555 L MG MG . D MG 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.973 ? metalc ? metalc28 L MG MG . D MG 1502 1_555 P O HOH . D HOH 1602 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? metalc ? metalc29 L MG MG . D MG 1502 1_555 P O HOH . D HOH 1610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 6UK1 _atom_sites.fract_transf_matrix[1][1] 0.010519 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001774 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01663 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009644 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 ATP A 1 1501 2 ATP ATP . F 3 MG A 1 1502 1 MG MG . G 2 ATP B 1 1501 4 ATP ATP . H 3 MG B 1 1502 3 MG MG . I 2 ATP C 1 1501 6 ATP ATP . J 3 MG C 1 1502 5 MG MG . K 2 ATP D 1 1501 8 ATP ATP . L 3 MG D 1 1502 7 MG MG . M 4 HOH A 1 1601 32 HOH HOH . M 4 HOH A 2 1602 14 HOH HOH . M 4 HOH A 3 1603 41 HOH HOH . M 4 HOH A 4 1604 37 HOH HOH . M 4 HOH A 5 1605 6 HOH HOH . M 4 HOH A 6 1606 13 HOH HOH . M 4 HOH A 7 1607 8 HOH HOH . M 4 HOH A 8 1608 60 HOH HOH . M 4 HOH A 9 1609 67 HOH HOH . M 4 HOH A 10 1610 5 HOH HOH . M 4 HOH A 11 1611 18 HOH HOH . M 4 HOH A 12 1612 63 HOH HOH . M 4 HOH A 13 1613 56 HOH HOH . M 4 HOH A 14 1614 36 HOH HOH . M 4 HOH A 15 1615 43 HOH HOH . M 4 HOH A 16 1616 51 HOH HOH . M 4 HOH A 17 1617 33 HOH HOH . M 4 HOH A 18 1618 46 HOH HOH . M 4 HOH A 19 1619 49 HOH HOH . M 4 HOH A 20 1620 38 HOH HOH . M 4 HOH A 21 1621 71 HOH HOH . M 4 HOH A 22 1622 44 HOH HOH . M 4 HOH A 23 1623 73 HOH HOH . M 4 HOH A 24 1624 74 HOH HOH . M 4 HOH A 25 1625 47 HOH HOH . N 4 HOH B 1 1601 77 HOH HOH . N 4 HOH B 2 1602 19 HOH HOH . N 4 HOH B 3 1603 78 HOH HOH . N 4 HOH B 4 1604 23 HOH HOH . N 4 HOH B 5 1605 75 HOH HOH . N 4 HOH B 6 1606 59 HOH HOH . N 4 HOH B 7 1607 35 HOH HOH . N 4 HOH B 8 1608 1 HOH HOH . N 4 HOH B 9 1609 12 HOH HOH . N 4 HOH B 10 1610 70 HOH HOH . N 4 HOH B 11 1611 28 HOH HOH . N 4 HOH B 12 1612 24 HOH HOH . N 4 HOH B 13 1613 72 HOH HOH . N 4 HOH B 14 1614 26 HOH HOH . N 4 HOH B 15 1615 45 HOH HOH . N 4 HOH B 16 1616 66 HOH HOH . N 4 HOH B 17 1617 69 HOH HOH . N 4 HOH B 18 1618 42 HOH HOH . O 4 HOH C 1 1601 9 HOH HOH . O 4 HOH C 2 1602 2 HOH HOH . O 4 HOH C 3 1603 62 HOH HOH . O 4 HOH C 4 1604 27 HOH HOH . O 4 HOH C 5 1605 34 HOH HOH . O 4 HOH C 6 1606 4 HOH HOH . O 4 HOH C 7 1607 54 HOH HOH . O 4 HOH C 8 1608 3 HOH HOH . O 4 HOH C 9 1609 30 HOH HOH . O 4 HOH C 10 1610 65 HOH HOH . O 4 HOH C 11 1611 50 HOH HOH . O 4 HOH C 12 1612 64 HOH HOH . O 4 HOH C 13 1613 39 HOH HOH . O 4 HOH C 14 1614 57 HOH HOH . O 4 HOH C 15 1615 76 HOH HOH . P 4 HOH D 1 1601 7 HOH HOH . P 4 HOH D 2 1602 10 HOH HOH . P 4 HOH D 3 1603 15 HOH HOH . P 4 HOH D 4 1604 22 HOH HOH . P 4 HOH D 5 1605 21 HOH HOH . P 4 HOH D 6 1606 58 HOH HOH . P 4 HOH D 7 1607 25 HOH HOH . P 4 HOH D 8 1608 48 HOH HOH . P 4 HOH D 9 1609 11 HOH HOH . P 4 HOH D 10 1610 20 HOH HOH . P 4 HOH D 11 1611 16 HOH HOH . P 4 HOH D 12 1612 31 HOH HOH . P 4 HOH D 13 1613 29 HOH HOH . P 4 HOH D 14 1614 17 HOH HOH . P 4 HOH D 15 1615 68 HOH HOH . P 4 HOH D 16 1616 40 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . I 2 38.889 13.25 23.862 1 54.54 ? PG ATP 1501 C 1 HETATM 2 O O1G ATP . . . I 2 39.301 11.793 23.689 1 60.99 -1 O1G ATP 1501 C 1 HETATM 3 O O2G ATP . . . I 2 38.091 13.404 25.144 1 77.74 -1 O2G ATP 1501 C 1 HETATM 4 O O3G ATP . . . I 2 38.048 13.678 22.68 1 47.24 ? O3G ATP 1501 C 1 HETATM 5 P PB ATP . . . I 2 40.234 15.769 23.796 1 41.03 ? PB ATP 1501 C 1 HETATM 6 O O1B ATP . . . I 2 39.622 16.399 25.025 1 30.34 -1 O1B ATP 1501 C 1 HETATM 7 O O2B ATP . . . I 2 39.478 16.196 22.582 1 27.81 ? O2B ATP 1501 C 1 HETATM 8 O O3B ATP . . . I 2 40.207 14.166 23.947 1 63.79 ? O3B ATP 1501 C 1 HETATM 9 P PA ATP . . . I 2 42.879 15.899 24.805 1 43.04 ? PA ATP 1501 C 1 HETATM 10 O O1A ATP . . . I 2 42.381 14.782 25.686 1 12.81 -1 O1A ATP 1501 C 1 HETATM 11 O O2A ATP . . . I 2 43.087 17.155 25.643 1 32.06 ? O2A ATP 1501 C 1 HETATM 12 O O3A ATP . . . I 2 41.781 16.217 23.663 1 50.28 ? O3A ATP 1501 C 1 HETATM 13 O O5' ATP . . . I 2 44.228 15.486 24.129 1 43.17 ? O5' ATP 1501 C 1 HETATM 14 C C5' ATP . . . I 2 44.535 15.997 22.854 1 41.2 ? C5' ATP 1501 C 1 HETATM 15 C C4' ATP . . . I 2 45.963 15.642 22.456 1 37.96 ? C4' ATP 1501 C 1 HETATM 16 O O4' ATP . . . I 2 46.918 15.535 23.761 1 39.97 ? O4' ATP 1501 C 1 HETATM 17 C C3' ATP . . . I 2 46.004 14.51 21.858 1 36.98 ? C3' ATP 1501 C 1 HETATM 18 O O3' ATP . . . I 2 47.034 14.546 20.764 1 53.02 ? O3' ATP 1501 C 1 HETATM 19 C C2' ATP . . . I 2 46.43 13.48 22.946 1 35.28 ? C2' ATP 1501 C 1 HETATM 20 O O2' ATP . . . I 2 47.167 12.468 22.39 1 46.24 ? O2' ATP 1501 C 1 HETATM 21 C C1' ATP . . . I 2 47.28 14.282 23.907 1 41.24 ? C1' ATP 1501 C 1 HETATM 22 N N9 ATP . . . I 2 47.021 13.848 25.276 1 43.2 ? N9 ATP 1501 C 1 HETATM 23 C C8 ATP . . . I 2 45.911 13.646 26.032 1 43.76 ? C8 ATP 1501 C 1 HETATM 24 N N7 ATP . . . I 2 46.384 13.234 27.251 1 42.1 ? N7 ATP 1501 C 1 HETATM 25 C C5 ATP . . . I 2 47.758 13.196 27.209 1 43.51 ? C5 ATP 1501 C 1 HETATM 26 C C6 ATP . . . I 2 48.705 12.855 28.154 1 43.16 ? C6 ATP 1501 C 1 HETATM 27 N N6 ATP . . . I 2 48.836 12.42 29.487 1 40.55 ? N6 ATP 1501 C 1 HETATM 28 N N1 ATP . . . I 2 50.008 12.908 27.842 1 41.77 ? N1 ATP 1501 C 1 HETATM 29 C C2 ATP . . . I 2 50.409 13.299 26.584 1 36.51 ? C2 ATP 1501 C 1 HETATM 30 N N3 ATP . . . I 2 49.475 13.637 25.643 1 39.5 ? N3 ATP 1501 C 1 HETATM 31 C C4 ATP . . . I 2 48.164 13.584 25.961 1 46.54 ? C4 ATP 1501 C 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 29 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 31 #