data_6UKA # _model_server_result.job_id UlGwT7evnIDn4LpZa6csdA _model_server_result.datetime_utc '2025-03-12 01:40:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uka # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 6UKA # _exptl.entry_id 6UKA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 522.196 _entity.id 3 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 119.71 _cell.angle_gamma 90 _cell.entry_id 6UKA _cell.length_a 100.279 _cell.length_b 40.06 _cell.length_c 73.93 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG1 THR 17 A THR 17 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? metalc ? metalc2 A OG1 THR 35 A THR 35 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.654 ? metalc ? metalc3 C O1G GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.881 ? metalc ? metalc4 C O2B GNP . A GNP 201 1_555 D MG MG . A MG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.898 ? metalc ? metalc5 D MG MG . A MG 202 1_555 E O HOH . A HOH 314 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? metalc ? metalc6 D MG MG . A MG 202 1_555 E O HOH . A HOH 317 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.125 ? # _chem_comp.formula 'C10 H17 N6 O13 P3' _chem_comp.formula_weight 522.196 _chem_comp.id GNP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GNP doub 129 n n PG O2G GNP sing 130 n n PG O3G GNP sing 131 n n PG N3B GNP sing 132 n n O2G HOG2 GNP sing 133 n n O3G HOG3 GNP sing 134 n n N3B PB GNP sing 135 n n N3B HNB3 GNP sing 136 n n PB O1B GNP doub 137 n n PB O2B GNP sing 138 n n PB O3A GNP sing 139 n n O2B HOB2 GNP sing 140 n n O3A PA GNP sing 141 n n PA O1A GNP doub 142 n n PA O2A GNP sing 143 n n PA O5' GNP sing 144 n n O2A HOA2 GNP sing 145 n n O5' C5' GNP sing 146 n n C5' C4' GNP sing 147 n n C5' "H5'2" GNP sing 148 n n C5' "H5'1" GNP sing 149 n n C4' O4' GNP sing 150 n n C4' C3' GNP sing 151 n n C4' H4' GNP sing 152 n n O4' C1' GNP sing 153 n n C3' O3' GNP sing 154 n n C3' C2' GNP sing 155 n n C3' H3' GNP sing 156 n n O3' HO3' GNP sing 157 n n C2' O2' GNP sing 158 n n C2' C1' GNP sing 159 n n C2' H2' GNP sing 160 n n O2' HO2' GNP sing 161 n n C1' N9 GNP sing 162 n n C1' H1' GNP sing 163 n n N9 C8 GNP sing 164 n y N9 C4 GNP sing 165 n y C8 N7 GNP doub 166 n y C8 H8 GNP sing 167 n n N7 C5 GNP sing 168 n y C5 C6 GNP sing 169 n y C5 C4 GNP doub 170 n y C6 O6 GNP doub 171 n n C6 N1 GNP sing 172 n y N1 C2 GNP sing 173 n y N1 HN1 GNP sing 174 n n C2 N2 GNP sing 175 n n C2 N3 GNP doub 176 n y N2 HN21 GNP sing 177 n n N2 HN22 GNP sing 178 n n N3 C4 GNP sing 179 n y # _atom_sites.entry_id 6UKA _atom_sites.fract_transf_matrix[1][1] 0.009972 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.00569 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024963 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.015574 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 GNP A 1 201 200 GNP GNP . D 4 MG A 1 202 202 MG MG . E 5 HOH A 1 301 60 HOH HOH . E 5 HOH A 2 302 43 HOH HOH . E 5 HOH A 3 303 77 HOH HOH . E 5 HOH A 4 304 33 HOH HOH . E 5 HOH A 5 305 53 HOH HOH . E 5 HOH A 6 306 47 HOH HOH . E 5 HOH A 7 307 21 HOH HOH . E 5 HOH A 8 308 13 HOH HOH . E 5 HOH A 9 309 32 HOH HOH . E 5 HOH A 10 310 79 HOH HOH . E 5 HOH A 11 311 26 HOH HOH . E 5 HOH A 12 312 16 HOH HOH . E 5 HOH A 13 313 110 HOH HOH . E 5 HOH A 14 314 117 HOH HOH . E 5 HOH A 15 315 56 HOH HOH . E 5 HOH A 16 316 5 HOH HOH . E 5 HOH A 17 317 2 HOH HOH . E 5 HOH A 18 318 78 HOH HOH . E 5 HOH A 19 319 6 HOH HOH . E 5 HOH A 20 320 9 HOH HOH . E 5 HOH A 21 321 65 HOH HOH . E 5 HOH A 22 322 91 HOH HOH . E 5 HOH A 23 323 88 HOH HOH . E 5 HOH A 24 324 40 HOH HOH . E 5 HOH A 25 325 74 HOH HOH . E 5 HOH A 26 326 63 HOH HOH . E 5 HOH A 27 327 59 HOH HOH . E 5 HOH A 28 328 76 HOH HOH . E 5 HOH A 29 329 12 HOH HOH . E 5 HOH A 30 330 22 HOH HOH . E 5 HOH A 31 331 39 HOH HOH . E 5 HOH A 32 332 29 HOH HOH . E 5 HOH A 33 333 112 HOH HOH . E 5 HOH A 34 334 14 HOH HOH . E 5 HOH A 35 335 72 HOH HOH . E 5 HOH A 36 336 103 HOH HOH . E 5 HOH A 37 337 107 HOH HOH . E 5 HOH A 38 338 46 HOH HOH . E 5 HOH A 39 339 35 HOH HOH . E 5 HOH A 40 340 23 HOH HOH . E 5 HOH A 41 341 71 HOH HOH . E 5 HOH A 42 342 61 HOH HOH . E 5 HOH A 43 343 98 HOH HOH . E 5 HOH A 44 344 7 HOH HOH . E 5 HOH A 45 345 85 HOH HOH . E 5 HOH A 46 346 15 HOH HOH . E 5 HOH A 47 347 1 HOH HOH . E 5 HOH A 48 348 30 HOH HOH . E 5 HOH A 49 349 20 HOH HOH . E 5 HOH A 50 350 52 HOH HOH . E 5 HOH A 51 351 27 HOH HOH . E 5 HOH A 52 352 3 HOH HOH . E 5 HOH A 53 353 45 HOH HOH . E 5 HOH A 54 354 31 HOH HOH . E 5 HOH A 55 355 10 HOH HOH . E 5 HOH A 56 356 121 HOH HOH . E 5 HOH A 57 357 49 HOH HOH . E 5 HOH A 58 358 41 HOH HOH . E 5 HOH A 59 359 34 HOH HOH . E 5 HOH A 60 360 11 HOH HOH . E 5 HOH A 61 361 44 HOH HOH . E 5 HOH A 62 362 19 HOH HOH . E 5 HOH A 63 363 70 HOH HOH . E 5 HOH A 64 364 8 HOH HOH . E 5 HOH A 65 365 100 HOH HOH . E 5 HOH A 66 366 36 HOH HOH . E 5 HOH A 67 367 37 HOH HOH . E 5 HOH A 68 368 68 HOH HOH . E 5 HOH A 69 369 99 HOH HOH . E 5 HOH A 70 370 113 HOH HOH . E 5 HOH A 71 371 111 HOH HOH . E 5 HOH A 72 372 120 HOH HOH . E 5 HOH A 73 373 67 HOH HOH . E 5 HOH A 74 374 125 HOH HOH . E 5 HOH A 75 375 25 HOH HOH . E 5 HOH A 76 376 62 HOH HOH . E 5 HOH A 77 377 54 HOH HOH . E 5 HOH A 78 378 83 HOH HOH . E 5 HOH A 79 379 95 HOH HOH . E 5 HOH A 80 380 48 HOH HOH . E 5 HOH A 81 381 57 HOH HOH . E 5 HOH A 82 382 92 HOH HOH . E 5 HOH A 83 383 51 HOH HOH . E 5 HOH A 84 384 93 HOH HOH . E 5 HOH A 85 385 80 HOH HOH . E 5 HOH A 86 386 18 HOH HOH . E 5 HOH A 87 387 124 HOH HOH . E 5 HOH A 88 388 102 HOH HOH . E 5 HOH A 89 389 94 HOH HOH . E 5 HOH A 90 390 82 HOH HOH . E 5 HOH A 91 391 109 HOH HOH . E 5 HOH A 92 392 123 HOH HOH . E 5 HOH A 93 393 66 HOH HOH . E 5 HOH A 94 394 87 HOH HOH . E 5 HOH A 95 395 75 HOH HOH . E 5 HOH A 96 396 96 HOH HOH . F 5 HOH B 1 101 89 HOH HOH . F 5 HOH B 2 102 4 HOH HOH . F 5 HOH B 3 103 114 HOH HOH . F 5 HOH B 4 104 108 HOH HOH . F 5 HOH B 5 105 24 HOH HOH . F 5 HOH B 6 106 28 HOH HOH . F 5 HOH B 7 107 38 HOH HOH . F 5 HOH B 8 108 81 HOH HOH . F 5 HOH B 9 109 17 HOH HOH . F 5 HOH B 10 110 97 HOH HOH . F 5 HOH B 11 111 58 HOH HOH . F 5 HOH B 12 112 55 HOH HOH . F 5 HOH B 13 113 42 HOH HOH . F 5 HOH B 14 114 84 HOH HOH . F 5 HOH B 15 115 64 HOH HOH . F 5 HOH B 16 116 69 HOH HOH . F 5 HOH B 17 117 86 HOH HOH . F 5 HOH B 18 118 50 HOH HOH . F 5 HOH B 19 119 73 HOH HOH . F 5 HOH B 20 120 126 HOH HOH . F 5 HOH B 21 121 105 HOH HOH . F 5 HOH B 22 122 119 HOH HOH . F 5 HOH B 23 123 122 HOH HOH . F 5 HOH B 24 124 106 HOH HOH . F 5 HOH B 25 125 90 HOH HOH . F 5 HOH B 26 126 118 HOH HOH . F 5 HOH B 27 127 116 HOH HOH . F 5 HOH B 28 128 104 HOH HOH . F 5 HOH B 29 129 101 HOH HOH . F 5 HOH B 30 130 115 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GNP . . . C 3 18.686 -7.913 18.837 1 17.15 ? PG GNP 201 A 1 HETATM 2 O O1G GNP . . . C 3 17.603 -7.042 19.401 1 15.11 ? O1G GNP 201 A 1 HETATM 3 O O2G GNP . . . C 3 18.29 -8.4 17.444 1 13.21 ? O2G GNP 201 A 1 HETATM 4 O O3G GNP . . . C 3 18.863 -9.149 19.753 1 13.67 ? O3G GNP 201 A 1 HETATM 5 N N3B GNP . . . C 3 20.189 -7.087 18.773 1 13.39 ? N3B GNP 201 A 1 HETATM 6 P PB GNP . . . C 3 20.389 -5.606 18.087 1 12.24 ? PB GNP 201 A 1 HETATM 7 O O1B GNP . . . C 3 20.372 -5.719 16.582 1 13.7 ? O1B GNP 201 A 1 HETATM 8 O O2B GNP . . . C 3 19.301 -4.669 18.54 1 16.35 ? O2B GNP 201 A 1 HETATM 9 O O3A GNP . . . C 3 21.855 -5.033 18.556 1 11.01 ? O3A GNP 201 A 1 HETATM 10 P PA GNP . . . C 3 22.132 -4.027 19.755 1 10.05 ? PA GNP 201 A 1 HETATM 11 O O1A GNP . . . C 3 21.715 -2.607 19.377 1 10.58 ? O1A GNP 201 A 1 HETATM 12 O O2A GNP . . . C 3 21.444 -4.522 20.958 1 13.78 ? O2A GNP 201 A 1 HETATM 13 O O5' GNP . . . C 3 23.71 -4.16 19.938 1 14.18 ? O5' GNP 201 A 1 HETATM 14 C C5' GNP . . . C 3 24.408 -5.404 19.687 1 15.5 ? C5' GNP 201 A 1 HETATM 15 C C4' GNP . . . C 3 25.829 -5.187 20.139 1 10.69 ? C4' GNP 201 A 1 HETATM 16 O O4' GNP . . . C 3 26.4 -4.248 19.207 1 15.97 ? O4' GNP 201 A 1 HETATM 17 C C3' GNP . . . C 3 25.785 -4.462 21.485 1 16.54 ? C3' GNP 201 A 1 HETATM 18 O O3' GNP . . . C 3 26.898 -4.852 22.278 1 24.68 ? O3' GNP 201 A 1 HETATM 19 C C2' GNP . . . C 3 26.028 -3.004 21.096 1 14.24 ? C2' GNP 201 A 1 HETATM 20 O O2' GNP . . . C 3 26.825 -2.409 22.11 1 15.3 ? O2' GNP 201 A 1 HETATM 21 C C1' GNP . . . C 3 26.971 -3.186 19.918 1 17.72 ? C1' GNP 201 A 1 HETATM 22 N N9 GNP . . . C 3 26.894 -2.006 19.048 1 13.78 ? N9 GNP 201 A 1 HETATM 23 C C8 GNP . . . C 3 25.753 -1.407 18.586 1 11.9 ? C8 GNP 201 A 1 HETATM 24 N N7 GNP . . . C 3 25.987 -0.364 17.827 1 14.18 ? N7 GNP 201 A 1 HETATM 25 C C5 GNP . . . C 3 27.366 -0.279 17.785 1 12.61 ? C5 GNP 201 A 1 HETATM 26 C C6 GNP . . . C 3 28.232 0.657 17.113 1 12.64 ? C6 GNP 201 A 1 HETATM 27 O O6 GNP . . . C 3 27.891 1.602 16.42 1 13.36 ? O6 GNP 201 A 1 HETATM 28 N N1 GNP . . . C 3 29.565 0.38 17.339 1 13.98 ? N1 GNP 201 A 1 HETATM 29 C C2 GNP . . . C 3 30.037 -0.652 18.106 1 10.78 ? C2 GNP 201 A 1 HETATM 30 N N2 GNP . . . C 3 31.361 -0.766 18.213 1 15.52 ? N2 GNP 201 A 1 HETATM 31 N N3 GNP . . . C 3 29.247 -1.525 18.733 1 12.66 ? N3 GNP 201 A 1 HETATM 32 C C4 GNP . . . C 3 27.939 -1.283 18.531 1 11.49 ? C4 GNP 201 A 1 HETATM 33 H HOG2 GNP . . . C 3 17.614 -7.962 17.172 1 15.88 ? HOG2 GNP 201 A 1 HETATM 34 H HOG3 GNP . . . C 3 19.591 -9.543 19.559 1 16.43 ? HOG3 GNP 201 A 1 HETATM 35 H HNB3 GNP . . . C 3 20.876 -7.469 19.12 1 16.1 ? HNB3 GNP 201 A 1 HETATM 36 H HOB2 GNP . . . C 3 19.223 -4.714 19.385 1 19.65 ? HOB2 GNP 201 A 1 HETATM 37 H "H5'2" GNP . . . C 3 24.001 -6.125 20.191 1 18.63 ? "H5'2" GNP 201 A 1 HETATM 38 H "H5'1" GNP . . . C 3 24.385 -5.616 18.741 1 18.63 ? "H5'1" GNP 201 A 1 HETATM 39 H H4' GNP . . . C 3 26.386 -5.981 20.167 1 12.85 ? H4' GNP 201 A 1 HETATM 40 H H3' GNP . . . C 3 24.922 -4.612 21.901 1 19.88 ? H3' GNP 201 A 1 HETATM 41 H HO3' GNP . . . C 3 26.985 -4.313 22.929 1 29.65 ? HO3' GNP 201 A 1 HETATM 42 H H2' GNP . . . C 3 25.205 -2.539 20.877 1 17.12 ? H2' GNP 201 A 1 HETATM 43 H HO2' GNP . . . C 3 26.329 -1.952 22.627 1 18.39 ? HO2' GNP 201 A 1 HETATM 44 H H1' GNP . . . C 3 27.883 -3.385 20.18 1 21.29 ? H1' GNP 201 A 1 HETATM 45 H H8 GNP . . . C 3 24.897 -1.709 18.791 1 14.31 ? H8 GNP 201 A 1 HETATM 46 H HN1 GNP . . . C 3 30.145 0.897 16.97 1 16.81 ? HN1 GNP 201 A 1 HETATM 47 H HN21 GNP . . . C 3 31.702 -1.423 18.651 1 18.65 ? HN21 GNP 201 A 1 HETATM 48 H HN22 GNP . . . C 3 31.874 -0.182 17.844 1 18.65 ? HN22 GNP 201 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 48 #