data_6UKB # _model_server_result.job_id VU6KXWLG6CcWAuSqPjsybQ _model_server_result.datetime_utc '2024-12-26 10:39:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ukb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":601}' # _entry.id 6UKB # _exptl.entry_id 6UKB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 383.449 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[5-(4-{[5-(acetylamino)-1,3,4-thiadiazol-2-yl]oxy}piperidin-1-yl)-1,3,4-thiadiazol-2-yl]acetamide _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UKB _cell.length_a 99.227 _cell.length_b 139.393 _cell.length_c 178.131 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UKB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression B,D,F 1 1 C 1 2 A,E 1 3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_455 -x-1/2,-y,z+1/2 -1 0 0 0 -1 0 0 0 1 -49.6135 0 89.0655 3 'crystal symmetry operation' 4_445 x-1/2,-y-1/2,-z 1 0 0 0 -1 0 0 0 -1 -49.6135 -69.6965 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N # _chem_comp.formula 'C13 H17 N7 O3 S2' _chem_comp.formula_weight 383.449 _chem_comp.id Q9V _chem_comp.mon_nstd_flag . _chem_comp.name N-[5-(4-{[5-(acetylamino)-1,3,4-thiadiazol-2-yl]oxy}piperidin-1-yl)-1,3,4-thiadiazol-2-yl]acetamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O22 C20 Q9V doub 275 n n C20 N19 Q9V sing 276 n n C20 C21 Q9V sing 277 n n N19 C18 Q9V sing 278 n n S23 C18 Q9V sing 279 n y S23 C15 Q9V sing 280 n y C18 N17 Q9V doub 281 n y C09 C10 Q9V sing 282 n n C09 N08 Q9V sing 283 n n C15 O14 Q9V sing 284 n n C15 N16 Q9V doub 285 n y N17 N16 Q9V sing 286 n y C10 C11 Q9V sing 287 n n O14 C11 Q9V sing 288 n n C11 C12 Q9V sing 289 n n N08 C13 Q9V sing 290 n n N08 C07 Q9V sing 291 n n S24 C07 Q9V sing 292 n y S24 C04 Q9V sing 293 n y C13 C12 Q9V sing 294 n n C07 N06 Q9V doub 295 n y O25 C02 Q9V doub 296 n n C02 C01 Q9V sing 297 n n C02 N03 Q9V sing 298 n n C04 N03 Q9V sing 299 n n C04 N05 Q9V doub 300 n y N06 N05 Q9V sing 301 n y C10 H1 Q9V sing 302 n n C10 H2 Q9V sing 303 n n C13 H3 Q9V sing 304 n n C13 H4 Q9V sing 305 n n C21 H5 Q9V sing 306 n n C21 H6 Q9V sing 307 n n C21 H7 Q9V sing 308 n n C01 H8 Q9V sing 309 n n C01 H9 Q9V sing 310 n n C01 H10 Q9V sing 311 n n C09 H11 Q9V sing 312 n n C09 H12 Q9V sing 313 n n C11 H13 Q9V sing 314 n n C12 H14 Q9V sing 315 n n C12 H15 Q9V sing 316 n n N03 H16 Q9V sing 317 n n N19 H17 Q9V sing 318 n n # _atom_sites.entry_id 6UKB _atom_sites.fract_transf_matrix[1][1] 0.010078 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007174 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005614 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 Q9V A 1 601 2 Q9V LIG . F 2 Q9V B 1 601 1 Q9V LIG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 Q9V . . . F 2 -28.862 -24.225 2.22 1 55.33 ? C10 Q9V 601 B 1 HETATM 2 C C13 Q9V . . . F 2 -30.4 -22.197 3.429 1 72.65 ? C13 Q9V 601 B 1 HETATM 3 C C15 Q9V . . . F 2 -26.292 -23.973 1.888 1 71.48 ? C15 Q9V 601 B 1 HETATM 4 C C20 Q9V . . . F 2 -23.212 -27.06 -0.015 1 67.09 ? C20 Q9V 601 B 1 HETATM 5 C C21 Q9V . . . F 2 -22.412 -25.881 0.557 1 82.23 ? C21 Q9V 601 B 1 HETATM 6 C C01 Q9V . . . F 2 -36.439 -28.456 4.418 1 88.52 ? C01 Q9V 601 B 1 HETATM 7 C C02 Q9V . . . F 2 -35.571 -27.2 4.344 1 92.9 ? C02 Q9V 601 B 1 HETATM 8 C C04 Q9V . . . F 2 -33.274 -26.224 4.352 1 80.84 ? C04 Q9V 601 B 1 HETATM 9 C C07 Q9V . . . F 2 -31.789 -24.287 3.587 1 64.32 ? C07 Q9V 601 B 1 HETATM 10 C C09 Q9V . . . F 2 -30.274 -23.968 1.756 1 59.86 ? C09 Q9V 601 B 1 HETATM 11 C C11 Q9V . . . F 2 -28.34 -22.862 2.335 1 62.73 ? C11 Q9V 601 B 1 HETATM 12 C C12 Q9V . . . F 2 -28.894 -22.367 3.6 1 67.8 ? C12 Q9V 601 B 1 HETATM 13 C C18 Q9V . . . F 2 -25.214 -26.022 0.841 1 64.51 ? C18 Q9V 601 B 1 HETATM 14 N N03 Q9V . . . F 2 -34.154 -27.357 4.428 1 82.9 ? N03 Q9V 601 B 1 HETATM 15 N N05 Q9V . . . F 2 -32.658 -25.512 5.321 1 76.54 ? N05 Q9V 601 B 1 HETATM 16 N N06 Q9V . . . F 2 -31.861 -24.486 4.909 1 62.9 ? N06 Q9V 601 B 1 HETATM 17 N N08 Q9V . . . F 2 -31.059 -23.344 2.809 1 66.29 ? N08 Q9V 601 B 1 HETATM 18 N N16 Q9V . . . F 2 -25.792 -24.898 2.72 1 67.19 ? N16 Q9V 601 B 1 HETATM 19 N N17 Q9V . . . F 2 -25.222 -25.985 2.177 1 64.49 ? N17 Q9V 601 B 1 HETATM 20 N N19 Q9V . . . F 2 -24.63 -27.098 0.118 1 51.55 ? N19 Q9V 601 B 1 HETATM 21 O O14 Q9V . . . F 2 -26.92 -22.772 2.318 1 75.27 ? O14 Q9V 601 B 1 HETATM 22 O O22 Q9V . . . F 2 -22.649 -27.955 -0.611 1 65.38 ? O22 Q9V 601 B 1 HETATM 23 O O25 Q9V . . . F 2 -36.072 -26.082 4.225 1 98.94 ? O25 Q9V 601 B 1 HETATM 24 S S23 Q9V . . . F 2 -25.968 -24.557 0.282 1 69.9 ? S23 Q9V 601 B 1 HETATM 25 S S24 Q9V . . . F 2 -32.788 -25.479 2.888 1 73.83 ? S24 Q9V 601 B 1 # _model_server_stats.io_time_ms 47 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 18 _model_server_stats.query_time_ms 316 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 25 #