data_6UKJ # _model_server_result.job_id swpo0r_EZWjWy-VOcHLbPw _model_server_result.datetime_utc '2025-08-29 21:50:28' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6ukj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 6UKJ # _exptl.entry_id 6UKJ _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UKJ _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UKJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 292 A CYS 289 1_555 A SG CYS 315 A CYS 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.024 ? disulf ? disulf2 A SG CYS 304 A CYS 301 1_555 A SG CYS 312 A CYS 309 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf3 B SG CYS 25 H CYS 25 1_555 B SG CYS 99 H CYS 99 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf4 C SG CYS 24 L CYS 24 1_555 C SG CYS 89 L CYS 89 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 374 n n CBA CAB Y01 sing 375 n n CBA CAN Y01 sing 376 n n CAN CAJ Y01 sing 377 n n CAJ CAO Y01 sing 378 n n CAO CBB Y01 sing 379 n n CBB CAC Y01 sing 380 n n CBB CBE Y01 sing 381 n n CBE CAP Y01 sing 382 n n CBE CBI Y01 sing 383 n n CAP CAQ Y01 sing 384 n n CAQ CBG Y01 sing 385 n n CBG CBI Y01 sing 386 n n CBG CBD Y01 sing 387 n n CBI CAE Y01 sing 388 n n CBI CAU Y01 sing 389 n n CAU CAS Y01 sing 390 n n CAS CBF Y01 sing 391 n n CBF CBD Y01 sing 392 n n CBF CBH Y01 sing 393 n n CBD CAK Y01 sing 394 n n CAK CAI Y01 sing 395 n n CAI CAZ Y01 doub 396 n n CAZ CAV Y01 sing 397 n n CAZ CBH Y01 sing 398 n n CAV CBC Y01 sing 399 n n CBH CAD Y01 sing 400 n n CBH CAT Y01 sing 401 n n CAT CAR Y01 sing 402 n n CAR CBC Y01 sing 403 n n CBC OAW Y01 sing 404 n n OAW CAY Y01 sing 405 n n CAY OAG Y01 doub 406 n n CAY CAM Y01 sing 407 n n CAM CAL Y01 sing 408 n n CAL CAX Y01 sing 409 n n CAX OAH Y01 sing 410 n n CAX OAF Y01 doub 411 n n CAA HAA1 Y01 sing 412 n n CAA HAA2 Y01 sing 413 n n CAA HAA3 Y01 sing 414 n n CBA HBA Y01 sing 415 n n CAB HAB1 Y01 sing 416 n n CAB HAB2 Y01 sing 417 n n CAB HAB3 Y01 sing 418 n n CAN HAN1 Y01 sing 419 n n CAN HAN2 Y01 sing 420 n n CAJ HAJ1 Y01 sing 421 n n CAJ HAJ2 Y01 sing 422 n n CAO HAO1 Y01 sing 423 n n CAO HAO2 Y01 sing 424 n n CBB HBB Y01 sing 425 n n CAC HAC1 Y01 sing 426 n n CAC HAC2 Y01 sing 427 n n CAC HAC3 Y01 sing 428 n n CBE HBE Y01 sing 429 n n CAP HAP1 Y01 sing 430 n n CAP HAP2 Y01 sing 431 n n CAQ HAQ1 Y01 sing 432 n n CAQ HAQ2 Y01 sing 433 n n CBG HBG Y01 sing 434 n n CBD HBD Y01 sing 435 n n CAE HAE1 Y01 sing 436 n n CAE HAE2 Y01 sing 437 n n CAE HAE3 Y01 sing 438 n n CAU HAU1 Y01 sing 439 n n CAU HAU2 Y01 sing 440 n n CAS HAS1 Y01 sing 441 n n CAS HAS2 Y01 sing 442 n n CBF HBF Y01 sing 443 n n CAK HAK1 Y01 sing 444 n n CAK HAK2 Y01 sing 445 n n CAI HAI Y01 sing 446 n n CAV HAV1 Y01 sing 447 n n CAV HAV2 Y01 sing 448 n n CBC HBC Y01 sing 449 n n CAD HAD1 Y01 sing 450 n n CAD HAD2 Y01 sing 451 n n CAD HAD3 Y01 sing 452 n n CAT HAT1 Y01 sing 453 n n CAT HAT2 Y01 sing 454 n n CAR HAR1 Y01 sing 455 n n CAR HAR2 Y01 sing 456 n n CAM HAM1 Y01 sing 457 n n CAM HAM2 Y01 sing 458 n n CAL HAL1 Y01 sing 459 n n CAL HAL2 Y01 sing 460 n n OAH HAH Y01 sing 461 n n # _atom_sites.entry_id 6UKJ _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # _pdbx_nonpoly_scheme.asym_id D _pdbx_nonpoly_scheme.entity_id 4 _pdbx_nonpoly_scheme.mon_id Y01 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 501 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id Y01 _pdbx_nonpoly_scheme.auth_mon_id Y01 _pdbx_nonpoly_scheme.pdb_ins_code . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . D 4 139.746 168.83 147.808 1 82.46 ? CAA Y01 501 A 1 HETATM 2 C CBA Y01 . . . D 4 139.768 170.344 147.994 1 82.46 ? CBA Y01 501 A 1 HETATM 3 C CAB Y01 . . . D 4 138.491 170.795 148.69 1 82.46 ? CAB Y01 501 A 1 HETATM 4 C CAN Y01 . . . D 4 139.813 171.009 146.618 1 82.46 ? CAN Y01 501 A 1 HETATM 5 C CAJ Y01 . . . D 4 141.018 171.923 146.501 1 82.46 ? CAJ Y01 501 A 1 HETATM 6 C CAO Y01 . . . D 4 142.3 171.14 146.759 1 82.46 ? CAO Y01 501 A 1 HETATM 7 C CBB Y01 . . . D 4 143.159 171.228 145.509 1 82.46 ? CBB Y01 501 A 1 HETATM 8 C CAC Y01 . . . D 4 142.982 172.595 144.858 1 82.46 ? CAC Y01 501 A 1 HETATM 9 C CBE Y01 . . . D 4 144.635 170.977 145.82 1 82.46 ? CBE Y01 501 A 1 HETATM 10 C CAP Y01 . . . D 4 144.878 169.636 146.544 1 82.46 ? CAP Y01 501 A 1 HETATM 11 C CAQ Y01 . . . D 4 145.92 168.856 145.729 1 82.46 ? CAQ Y01 501 A 1 HETATM 12 C CBG Y01 . . . D 4 146.615 169.941 144.911 1 82.46 ? CBG Y01 501 A 1 HETATM 13 C CBI Y01 . . . D 4 145.45 170.865 144.524 1 82.46 ? CBI Y01 501 A 1 HETATM 14 C CAE Y01 . . . D 4 144.596 170.215 143.429 1 82.46 ? CAE Y01 501 A 1 HETATM 15 C CAU Y01 . . . D 4 146.064 172.164 144.034 1 82.46 ? CAU Y01 501 A 1 HETATM 16 C CAS Y01 . . . D 4 146.806 171.855 142.746 1 82.46 ? CAS Y01 501 A 1 HETATM 17 C CBF Y01 . . . D 4 147.877 170.768 142.925 1 82.46 ? CBF Y01 501 A 1 HETATM 18 C CBD Y01 . . . D 4 147.323 169.517 143.635 1 82.46 ? CBD Y01 501 A 1 HETATM 19 C CAK Y01 . . . D 4 148.465 168.559 143.939 1 82.46 ? CAK Y01 501 A 1 HETATM 20 C CAI Y01 . . . D 4 149.199 168.259 142.684 1 82.46 ? CAI Y01 501 A 1 HETATM 21 C CAZ Y01 . . . D 4 149.098 168.999 141.592 1 82.46 ? CAZ Y01 501 A 1 HETATM 22 C CAV Y01 . . . D 4 149.804 168.57 140.342 1 82.46 ? CAV Y01 501 A 1 HETATM 23 C CBH Y01 . . . D 4 148.453 170.355 141.55 1 82.46 ? CBH Y01 501 A 1 HETATM 24 C CAD Y01 . . . D 4 147.337 170.317 140.504 1 82.46 ? CAD Y01 501 A 1 HETATM 25 C CAT Y01 . . . D 4 149.51 171.377 141.123 1 82.46 ? CAT Y01 501 A 1 HETATM 26 C CAR Y01 . . . D 4 150.088 170.99 139.764 1 82.46 ? CAR Y01 501 A 1 HETATM 27 C CBC Y01 . . . D 4 150.809 169.648 139.921 1 82.46 ? CBC Y01 501 A 1 HETATM 28 O OAW Y01 . . . D 4 151.36 169.298 138.666 1 82.46 ? OAW Y01 501 A 1 HETATM 29 C CAY Y01 . . . D 4 152.594 169.829 138.385 1 82.46 ? CAY Y01 501 A 1 HETATM 30 O OAG Y01 . . . D 4 153.4 169.894 139.297 1 82.46 ? OAG Y01 501 A 1 HETATM 31 C CAM Y01 . . . D 4 152.819 170.275 136.969 1 82.46 ? CAM Y01 501 A 1 HETATM 32 C CAL Y01 . . . D 4 151.824 169.543 136.079 1 82.46 ? CAL Y01 501 A 1 HETATM 33 C CAX Y01 . . . D 4 151.765 170.118 134.651 1 82.46 ? CAX Y01 501 A 1 HETATM 34 O OAH Y01 . . . D 4 151.203 171.218 134.504 1 82.46 ? OAH Y01 501 A 1 HETATM 35 O OAF Y01 . . . D 4 152.293 169.43 133.729 1 82.46 ? OAF Y01 501 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 626 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #