data_6UKO
#
_model_server_result.job_id            05LtSWW5jiMeyQEt-mWfkw 
_model_server_result.datetime_utc      '2024-11-04 22:46:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uko 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"H","auth_seq_id":1800}' 
#
_entry.id    6UKO 
#
_exptl.entry_id    6UKO 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          107.268 
_cell.angle_gamma         90 
_cell.entry_id            6UKO 
_cell.length_a            254.055 
_cell.length_b            161.127 
_cell.length_c            132.595 
_cell.Z_PDB               28 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UKO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    'C 2y' 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 H N N 
? 2 J N N 
? 2 L N N 
? 2 N N N 
? 2 P N N 
? 2 R N N 
? 2 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 H O1B ADP . A ADP 1800 1_555 I MG MG . A MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.931 ? 
metalc ? metalc2 H O3B ADP . A ADP 1800 1_555 I MG MG . A MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.539 ? 
metalc ? metalc3 J O3B ADP . B ADP 1800 1_555 K MG MG . B MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.525 ? 
metalc ? metalc4 L O3B ADP . C ADP 1800 1_555 M MG MG . C MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.524 ? 
metalc ? metalc5 N O1B ADP . D ADP 1800 1_555 O MG MG . D MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.928 ? 
metalc ? metalc6 N O3B ADP . D ADP 1800 1_555 O MG MG . D MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.451 ? 
metalc ? metalc7 P O2B ADP . E ADP 1800 1_555 Q MG MG . E MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.889 ? 
metalc ? metalc8 P O3B ADP . E ADP 1800 1_555 Q MG MG . E MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.63 ? 
metalc ? metalc9 R O2B ADP . F ADP 1800 1_555 S MG MG . F MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.52 ? 
metalc ? metalc10 R O3B ADP . F ADP 1800 1_555 S MG MG . F MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.505 ? 
metalc ? metalc11 T O1B ADP . G ADP 1800 1_555 U MG MG . G MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.932 ? 
metalc ? metalc12 T O3B ADP . G ADP 1800 1_555 U MG MG . G MG 1801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.546 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 1 n n 
PB O2B ADP sing 2 n n 
PB O3B ADP sing 3 n n 
PB O3A ADP sing 4 n n 
O2B HOB2 ADP sing 5 n n 
O3B HOB3 ADP sing 6 n n 
PA O1A ADP doub 7 n n 
PA O2A ADP sing 8 n n 
PA O3A ADP sing 9 n n 
PA O5' ADP sing 10 n n 
O2A HOA2 ADP sing 11 n n 
O5' C5' ADP sing 12 n n 
C5' C4' ADP sing 13 n n 
C5' "H5'1" ADP sing 14 n n 
C5' "H5'2" ADP sing 15 n n 
C4' O4' ADP sing 16 n n 
C4' C3' ADP sing 17 n n 
C4' H4' ADP sing 18 n n 
O4' C1' ADP sing 19 n n 
C3' O3' ADP sing 20 n n 
C3' C2' ADP sing 21 n n 
C3' H3' ADP sing 22 n n 
O3' HO3' ADP sing 23 n n 
C2' O2' ADP sing 24 n n 
C2' C1' ADP sing 25 n n 
C2' H2' ADP sing 26 n n 
O2' HO2' ADP sing 27 n n 
C1' N9 ADP sing 28 n n 
C1' H1' ADP sing 29 n n 
N9 C8 ADP sing 30 n y 
N9 C4 ADP sing 31 n y 
C8 N7 ADP doub 32 n y 
C8 H8 ADP sing 33 n n 
N7 C5 ADP sing 34 n y 
C5 C6 ADP sing 35 n y 
C5 C4 ADP doub 36 n y 
C6 N6 ADP sing 37 n n 
C6 N1 ADP doub 38 n y 
N6 HN61 ADP sing 39 n n 
N6 HN62 ADP sing 40 n n 
N1 C2 ADP sing 41 n y 
C2 N3 ADP doub 42 n y 
C2 H2 ADP sing 43 n n 
N3 C4 ADP sing 44 n y 
#
_atom_sites.entry_id                     6UKO 
_atom_sites.fract_transf_matrix[1][1]    0.003936 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.001224 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.006206 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.007898 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 ADP A 1 1800 1800 ADP ADP . 
I 3 MG A 1 1801 1801 MG MG . 
J 2 ADP B 1 1800 1800 ADP ADP . 
K 3 MG B 1 1801 1801 MG MG . 
L 2 ADP C 1 1800 1800 ADP ADP . 
M 3 MG C 1 1801 1801 MG MG . 
N 2 ADP D 1 1800 1800 ADP ADP . 
O 3 MG D 1 1801 1801 MG MG . 
P 2 ADP E 1 1800 1800 ADP ADP . 
Q 3 MG E 1 1801 1801 MG MG . 
R 2 ADP F 1 1800 1800 ADP ADP . 
S 3 MG F 1 1801 1801 MG MG . 
T 2 ADP G 1 1800 1800 ADP ADP . 
U 3 MG G 1 1801 1801 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . H 2 -49.265 -54.267 23.039 1 256.34 ? PB ADP 1800 A 1 
HETATM 2 O O1B ADP . . . H 2 -48.881 -54.556 21.615 1 255.54 ? O1B ADP 1800 A 1 
HETATM 3 O O2B ADP . . . H 2 -49.619 -52.82 23.287 1 257.06 ? O2B ADP 1800 A 1 
HETATM 4 O O3B ADP . . . H 2 -48.317 -54.898 24.033 1 257.93 ? O3B ADP 1800 A 1 
HETATM 5 P PA ADP . . . H 2 -51.054 -56.228 22.218 1 255.5 ? PA ADP 1800 A 1 
HETATM 6 O O1A ADP . . . H 2 -51.106 -55.677 20.815 1 254.62 ? O1A ADP 1800 A 1 
HETATM 7 O O2A ADP . . . H 2 -50.114 -57.365 22.537 1 261.41 ? O2A ADP 1800 A 1 
HETATM 8 O O3A ADP . . . H 2 -50.686 -55.01 23.203 1 254.28 ? O3A ADP 1800 A 1 
HETATM 9 O O5' ADP . . . H 2 -52.546 -56.672 22.639 1 255.8 ? O5' ADP 1800 A 1 
HETATM 10 C C5' ADP . . . H 2 -52.87 -58.063 22.615 1 258 ? C5' ADP 1800 A 1 
HETATM 11 C C4' ADP . . . H 2 -54.378 -58.316 22.708 1 258.41 ? C4' ADP 1800 A 1 
HETATM 12 O O4' ADP . . . H 2 -55.015 -57.242 23.404 1 257.23 ? O4' ADP 1800 A 1 
HETATM 13 C C3' ADP . . . H 2 -55.084 -58.454 21.359 1 259.89 ? C3' ADP 1800 A 1 
HETATM 14 O O3' ADP . . . H 2 -55.758 -59.713 21.273 1 263.22 ? O3' ADP 1800 A 1 
HETATM 15 C C2' ADP . . . H 2 -56.066 -57.299 21.273 1 259.53 ? C2' ADP 1800 A 1 
HETATM 16 O O2' ADP . . . H 2 -57.291 -57.735 20.661 1 262.51 ? O2' ADP 1800 A 1 
HETATM 17 C C1' ADP . . . H 2 -56.184 -56.796 22.712 1 257.42 ? C1' ADP 1800 A 1 
HETATM 18 N N9 ADP . . . H 2 -56.229 -55.313 22.753 1 255.5 ? N9 ADP 1800 A 1 
HETATM 19 C C8 ADP . . . H 2 -55.187 -54.546 23.129 1 253.52 ? C8 ADP 1800 A 1 
HETATM 20 N N7 ADP . . . H 2 -55.516 -53.236 23.068 1 252.63 ? N7 ADP 1800 A 1 
HETATM 21 C C5 ADP . . . H 2 -56.779 -53.144 22.632 1 254.28 ? C5 ADP 1800 A 1 
HETATM 22 C C6 ADP . . . H 2 -57.712 -52.033 22.362 1 256.13 ? C6 ADP 1800 A 1 
HETATM 23 N N6 ADP . . . H 2 -57.294 -50.757 22.547 1 256.85 ? N6 ADP 1800 A 1 
HETATM 24 N N1 ADP . . . H 2 -58.956 -52.341 21.924 1 257.36 ? N1 ADP 1800 A 1 
HETATM 25 C C2 ADP . . . H 2 -59.336 -53.628 21.759 1 258.02 ? C2 ADP 1800 A 1 
HETATM 26 N N3 ADP . . . H 2 -58.527 -54.683 21.993 1 257.49 ? N3 ADP 1800 A 1 
HETATM 27 C C4 ADP . . . H 2 -57.255 -54.516 22.426 1 255.71 ? C4 ADP 1800 A 1 
HETATM 28 H "H5'1" ADP . . . H 2 -52.373 -58.56 23.45 1 309.59 ? "H5'1" ADP 1800 A 1 
HETATM 29 H "H5'2" ADP . . . H 2 -52.491 -58.502 21.689 1 309.59 ? "H5'2" ADP 1800 A 1 
HETATM 30 H H4' ADP . . . H 2 -54.47 -59.273 23.241 1 310.1 ? H4' ADP 1800 A 1 
HETATM 31 H H3' ADP . . . H 2 -54.37 -58.427 20.523 1 311.86 ? H3' ADP 1800 A 1 
HETATM 32 H HO3' ADP . . . H 2 -56.048 -59.863 20.363 1 315.87 ? HO3' ADP 1800 A 1 
HETATM 33 H H2' ADP . . . H 2 -55.75 -56.47 20.624 1 311.44 ? H2' ADP 1800 A 1 
HETATM 34 H HO2' ADP . . . H 2 -57.968 -57.852 21.342 1 315.01 ? HO2' ADP 1800 A 1 
HETATM 35 H H1' ADP . . . H 2 -57.11 -57.185 23.158 1 308.91 ? H1' ADP 1800 A 1 
HETATM 36 H H8 ADP . . . H 2 -54.221 -54.926 23.437 1 304.22 ? H8 ADP 1800 A 1 
HETATM 37 H HN61 ADP . . . H 2 -56.355 -50.574 22.872 1 308.22 ? HN61 ADP 1800 A 1 
HETATM 38 H HN62 ADP . . . H 2 -57.923 -49.992 22.36 1 308.22 ? HN62 ADP 1800 A 1 
HETATM 39 H H2 ADP . . . H 2 -60.346 -53.824 21.421 1 309.62 ? H2 ADP 1800 A 1 
#
_model_server_stats.io_time_ms              49 
_model_server_stats.parse_time_ms           16 
_model_server_stats.create_model_time_ms    40 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           39 
#