data_6UKS
#
_model_server_result.job_id            cJuHPMwIas5bBjWSMRo5vA 
_model_server_result.datetime_utc      '2024-11-04 22:35:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          6uks 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":800}' 
#
_entry.id    6UKS 
#
_exptl.entry_id    6UKS 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              523.247 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            6UKS 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 6UKS 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    heptameric 
_pdbx_struct_assembly.oligomeric_count      7 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 I N N 
? 3 J N N 
? 3 L N N 
? 3 N N N 
? 3 P N N 
? 3 R N N 
? 3 T N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OG SER 237 A SER 237 1_555 H MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
covale ? covale1 A NH2 ARG 346 A ARG 346 1_555 I S1G AGS . A AGS 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? 
metalc ? metalc2 B OG SER 237 B SER 237 1_555 K MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
covale ? covale2 B NH2 ARG 346 B ARG 346 1_555 J S1G AGS . B AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? 
metalc ? metalc3 C OG SER 237 C SER 237 1_555 M MG MG . C MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? 
covale ? covale3 C NH2 ARG 346 C ARG 346 1_555 L S1G AGS . C AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.656 ? 
metalc ? metalc4 D OG SER 237 D SER 237 1_555 O MG MG . D MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
covale ? covale4 D NH2 ARG 346 D ARG 346 1_555 N S1G AGS . D AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? 
metalc ? metalc5 E OG SER 237 E SER 237 1_555 Q MG MG . E MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
covale ? covale5 E NH2 ARG 346 E ARG 346 1_555 P S1G AGS . E AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? 
metalc ? metalc6 F OG SER 237 F SER 237 1_555 S MG MG . F MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
covale ? covale6 F NH2 ARG 346 F ARG 346 1_555 R S1G AGS . F AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.626 ? 
metalc ? metalc7 G OG SER 237 G SER 237 1_555 U MG MG . G MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? 
covale ? covale7 G NH2 ARG 346 G ARG 346 1_555 T S1G AGS . G AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? 
metalc ? metalc8 H MG MG . A MG 801 1_555 J O2B AGS . B AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc9 H MG MG . A MG 801 1_555 J O2G AGS . B AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc10 I O2G AGS . A AGS 802 1_555 U MG MG . G MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc11 I O2B AGS . A AGS 802 1_555 U MG MG . G MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc12 K MG MG . B MG 801 1_555 L O2B AGS . C AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc13 K MG MG . B MG 801 1_555 L O2G AGS . C AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc14 M MG MG . C MG 801 1_555 N O2B AGS . D AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc15 M MG MG . C MG 801 1_555 N O2G AGS . D AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc16 O MG MG . D MG 801 1_555 P O2B AGS . E AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc17 O MG MG . D MG 801 1_555 P O2G AGS . E AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? 
metalc ? metalc18 Q MG MG . E MG 801 1_555 R O2B AGS . F AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? 
metalc ? metalc19 Q MG MG . E MG 801 1_555 R O2G AGS . F AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
metalc ? metalc20 S MG MG . F MG 801 1_555 T O2B AGS . G AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc21 S MG MG . F MG 801 1_555 T O2G AGS . G AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? 
#
_chem_comp.formula           'C10 H16 N5 O12 P3 S' 
_chem_comp.formula_weight    523.247 
_chem_comp.id                AGS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" 
#
_atom_sites.entry_id                     6UKS 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
H 2 MG A 1 801 801 MG MG . 
I 3 AGS A 1 802 800 AGS AGS . 
J 3 AGS B 1 800 800 AGS AGS . 
K 2 MG B 1 801 801 MG MG . 
L 3 AGS C 1 800 800 AGS AGS . 
M 2 MG C 1 801 801 MG MG . 
N 3 AGS D 1 800 800 AGS AGS . 
O 2 MG D 1 801 801 MG MG . 
P 3 AGS E 1 800 800 AGS AGS . 
Q 2 MG E 1 801 801 MG MG . 
R 3 AGS F 1 800 800 AGS AGS . 
S 2 MG F 1 801 801 MG MG . 
T 3 AGS G 1 800 800 AGS AGS . 
U 2 MG G 1 801 801 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG AGS . . . L 3 80.571 106.876 129.979 1 60.07 ? PG AGS 800 C 1 
HETATM 2 S S1G AGS . . . L 3 81.428 105.113 130.04 1 60.07 ? S1G AGS 800 C 1 
HETATM 3 O O2G AGS . . . L 3 80.727 107.507 128.569 1 60.07 ? O2G AGS 800 C 1 
HETATM 4 O O3G AGS . . . L 3 81.227 107.814 131.022 1 60.07 ? O3G AGS 800 C 1 
HETATM 5 P PB AGS . . . L 3 77.992 107.691 129.559 1 60.07 ? PB AGS 800 C 1 
HETATM 6 O O1B AGS . . . L 3 77.644 108.84 130.411 1 60.07 ? O1B AGS 800 C 1 
HETATM 7 O O2B AGS . . . L 3 78.631 108.089 128.229 1 60.07 ? O2B AGS 800 C 1 
HETATM 8 O O3B AGS . . . L 3 79.049 106.764 130.291 1 60.07 ? O3B AGS 800 C 1 
HETATM 9 P PA AGS . . . L 3 76.008 107.011 127.796 1 60.07 ? PA AGS 800 C 1 
HETATM 10 O O1A AGS . . . L 3 75.371 108.328 127.638 1 60.07 ? O1A AGS 800 C 1 
HETATM 11 O O2A AGS . . . L 3 77.103 106.716 126.772 1 60.07 ? O2A AGS 800 C 1 
HETATM 12 O O3A AGS . . . L 3 76.686 106.87 129.214 1 60.07 ? O3A AGS 800 C 1 
HETATM 13 O O5' AGS . . . L 3 74.884 105.912 127.726 1 60.07 ? O5' AGS 800 C 1 
HETATM 14 C C5' AGS . . . L 3 75.236 104.587 127.312 1 60.07 ? C5' AGS 800 C 1 
HETATM 15 C C4' AGS . . . L 3 74.176 103.6 127.736 1 60.07 ? C4' AGS 800 C 1 
HETATM 16 O O4' AGS . . . L 3 73.44 104.153 128.84 1 60.07 ? O4' AGS 800 C 1 
HETATM 17 C C3' AGS . . . L 3 73.158 103.198 126.667 1 60.07 ? C3' AGS 800 C 1 
HETATM 18 O O3' AGS . . . L 3 73.151 101.791 126.466 1 60.07 ? O3' AGS 800 C 1 
HETATM 19 C C2' AGS . . . L 3 71.814 103.69 127.214 1 60.07 ? C2' AGS 800 C 1 
HETATM 20 O O2' AGS . . . L 3 70.791 102.731 126.984 1 60.07 ? O2' AGS 800 C 1 
HETATM 21 C C1' AGS . . . L 3 72.077 103.835 128.706 1 60.07 ? C1' AGS 800 C 1 
HETATM 22 N N9 AGS . . . L 3 71.314 104.899 129.336 1 60.07 ? N9 AGS 800 C 1 
HETATM 23 C C8 AGS . . . L 3 71.8 105.87 130.168 1 60.07 ? C8 AGS 800 C 1 
HETATM 24 N N7 AGS . . . L 3 70.893 106.712 130.595 1 60.07 ? N7 AGS 800 C 1 
HETATM 25 C C5 AGS . . . L 3 69.728 106.265 129.998 1 60.07 ? C5 AGS 800 C 1 
HETATM 26 C C6 AGS . . . L 3 68.402 106.729 130.048 1 60.07 ? C6 AGS 800 C 1 
HETATM 27 N N6 AGS . . . L 3 68.016 107.789 130.759 1 60.07 ? N6 AGS 800 C 1 
HETATM 28 N N1 AGS . . . L 3 67.475 106.054 129.337 1 60.07 ? N1 AGS 800 C 1 
HETATM 29 C C2 AGS . . . L 3 67.858 104.991 128.625 1 60.07 ? C2 AGS 800 C 1 
HETATM 30 N N3 AGS . . . L 3 69.076 104.462 128.502 1 60.07 ? N3 AGS 800 C 1 
HETATM 31 C C4 AGS . . . L 3 69.97 105.151 129.216 1 60.07 ? C4 AGS 800 C 1 
HETATM 32 H HOG2 AGS . . . L 3 80.441 108.343 128.586 1 60.07 ? HOG2 AGS 800 C 1 
HETATM 33 H H21 AGS . . . L 3 80.728 107.804 131.75 1 60.07 ? H21 AGS 800 C 1 
HETATM 34 H "H5'1" AGS . . . L 3 75.356 104.569 126.349 1 60.07 ? "H5'1" AGS 800 C 1 
HETATM 35 H "H5'2" AGS . . . L 3 76.071 104.346 127.746 1 60.07 ? "H5'2" AGS 800 C 1 
HETATM 36 H H4' AGS . . . L 3 74.609 102.789 128.043 1 60.07 ? H4' AGS 800 C 1 
HETATM 37 H H3' AGS . . . L 3 73.346 103.649 125.831 1 60.07 ? H3' AGS 800 C 1 
HETATM 38 H H2' AGS . . . L 3 71.575 104.548 126.835 1 60.07 ? H2' AGS 800 C 1 
HETATM 39 H HO2' AGS . . . L 3 70.066 103.14 126.68 1 60.07 ? HO2' AGS 800 C 1 
HETATM 40 H H1' AGS . . . L 3 71.891 102.991 129.148 1 60.07 ? H1' AGS 800 C 1 
HETATM 41 H H8 AGS . . . L 3 72.733 105.929 130.424 1 60.07 ? H8 AGS 800 C 1 
HETATM 42 H HN61 AGS . . . L 3 67.709 107.677 131.608 1 60.07 ? HN61 AGS 800 C 1 
HETATM 43 H HN62 AGS . . . L 3 68.059 108.622 130.398 1 60.07 ? HN62 AGS 800 C 1 
HETATM 44 H H2 AGS . . . L 3 67.155 104.538 128.132 1 60.07 ? H2 AGS 800 C 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    35 
_model_server_stats.query_time_ms           235 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           44 
#