data_6UKS # _model_server_result.job_id rGhm1M32XsphuQo8Ud7aYA _model_server_result.datetime_utc '2024-11-04 22:32:56' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uks # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"T","auth_seq_id":800}' # _entry.id 6UKS # _exptl.entry_id 6UKS _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 523.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UKS _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UKS _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details heptameric _pdbx_struct_assembly.oligomeric_count 7 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 I N N ? 3 J N N ? 3 L N N ? 3 N N N ? 3 P N N ? 3 R N N ? 3 T N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OG SER 237 A SER 237 1_555 H MG MG . A MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? covale ? covale1 A NH2 ARG 346 A ARG 346 1_555 I S1G AGS . A AGS 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.623 ? metalc ? metalc2 B OG SER 237 B SER 237 1_555 K MG MG . B MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? covale ? covale2 B NH2 ARG 346 B ARG 346 1_555 J S1G AGS . B AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.631 ? metalc ? metalc3 C OG SER 237 C SER 237 1_555 M MG MG . C MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.388 ? covale ? covale3 C NH2 ARG 346 C ARG 346 1_555 L S1G AGS . C AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.656 ? metalc ? metalc4 D OG SER 237 D SER 237 1_555 O MG MG . D MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? covale ? covale4 D NH2 ARG 346 D ARG 346 1_555 N S1G AGS . D AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? metalc ? metalc5 E OG SER 237 E SER 237 1_555 Q MG MG . E MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? covale ? covale5 E NH2 ARG 346 E ARG 346 1_555 P S1G AGS . E AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.615 ? metalc ? metalc6 F OG SER 237 F SER 237 1_555 S MG MG . F MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? covale ? covale6 F NH2 ARG 346 F ARG 346 1_555 R S1G AGS . F AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.626 ? metalc ? metalc7 G OG SER 237 G SER 237 1_555 U MG MG . G MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.389 ? covale ? covale7 G NH2 ARG 346 G ARG 346 1_555 T S1G AGS . G AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.645 ? metalc ? metalc8 H MG MG . A MG 801 1_555 J O2B AGS . B AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc9 H MG MG . A MG 801 1_555 J O2G AGS . B AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc10 I O2G AGS . A AGS 802 1_555 U MG MG . G MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc11 I O2B AGS . A AGS 802 1_555 U MG MG . G MG 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc12 K MG MG . B MG 801 1_555 L O2B AGS . C AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc13 K MG MG . B MG 801 1_555 L O2G AGS . C AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc14 M MG MG . C MG 801 1_555 N O2B AGS . D AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc15 M MG MG . C MG 801 1_555 N O2G AGS . D AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc16 O MG MG . D MG 801 1_555 P O2B AGS . E AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc17 O MG MG . D MG 801 1_555 P O2G AGS . E AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.472 ? metalc ? metalc18 Q MG MG . E MG 801 1_555 R O2B AGS . F AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.008 ? metalc ? metalc19 Q MG MG . E MG 801 1_555 R O2G AGS . F AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? metalc ? metalc20 S MG MG . F MG 801 1_555 T O2B AGS . G AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? metalc ? metalc21 S MG MG . F MG 801 1_555 T O2G AGS . G AGS 800 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.471 ? # _chem_comp.formula 'C10 H16 N5 O12 P3 S' _chem_comp.formula_weight 523.247 _chem_comp.id AGS _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms "ATP-GAMMA-S;ADENOSINE 5'-(3-THIOTRIPHOSPHATE);ADENOSINE 5'-(GAMMA-THIOTRIPHOSPHATE);ADENOSINE-5'-DIPHOSPHATE MONOTHIOPHOSPHATE" # _atom_sites.entry_id 6UKS _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code H 2 MG A 1 801 801 MG MG . I 3 AGS A 1 802 800 AGS AGS . J 3 AGS B 1 800 800 AGS AGS . K 2 MG B 1 801 801 MG MG . L 3 AGS C 1 800 800 AGS AGS . M 2 MG C 1 801 801 MG MG . N 3 AGS D 1 800 800 AGS AGS . O 2 MG D 1 801 801 MG MG . P 3 AGS E 1 800 800 AGS AGS . Q 2 MG E 1 801 801 MG MG . R 3 AGS F 1 800 800 AGS AGS . S 2 MG F 1 801 801 MG MG . T 3 AGS G 1 800 800 AGS AGS . U 2 MG G 1 801 801 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG AGS . . . T 3 140.316 133.815 129.942 1 58.83 ? PG AGS 800 G 1 HETATM 2 S S1G AGS . . . T 3 138.781 135.034 130.003 1 58.83 ? S1G AGS 800 G 1 HETATM 3 O O2G AGS . . . T 3 140.448 133.179 128.531 1 58.83 ? O2G AGS 800 G 1 HETATM 4 O O3G AGS . . . T 3 140.129 132.685 130.984 1 58.83 ? O3G AGS 800 G 1 HETATM 5 P PB AGS . . . T 3 142.994 134.195 129.524 1 58.83 ? PB AGS 800 G 1 HETATM 6 O O1B AGS . . . T 3 143.804 133.309 130.375 1 58.83 ? O1B AGS 800 G 1 HETATM 7 O O2B AGS . . . T 3 142.59 133.56 128.193 1 58.83 ? O2B AGS 800 G 1 HETATM 8 O O3B AGS . . . T 3 141.639 134.574 130.255 1 58.83 ? O3B AGS 800 G 1 HETATM 9 P PA AGS . . . T 3 144.489 135.667 127.761 1 58.83 ? PA AGS 800 G 1 HETATM 10 O O1A AGS . . . T 3 145.633 134.755 127.603 1 58.83 ? O1A AGS 800 G 1 HETATM 11 O O2A AGS . . . T 3 143.374 135.46 126.737 1 58.83 ? O2A AGS 800 G 1 HETATM 12 O O3A AGS . . . T 3 143.816 135.501 129.179 1 58.83 ? O3A AGS 800 G 1 HETATM 13 O O5' AGS . . . T 3 145.027 137.144 127.692 1 58.83 ? O5' AGS 800 G 1 HETATM 14 C C5' AGS . . . T 3 144.137 138.187 127.278 1 58.83 ? C5' AGS 800 G 1 HETATM 15 C C4' AGS . . . T 3 144.667 139.535 127.703 1 58.83 ? C4' AGS 800 G 1 HETATM 16 O O4' AGS . . . T 3 145.569 139.353 128.808 1 58.83 ? O4' AGS 800 G 1 HETATM 17 C C3' AGS . . . T 3 145.411 140.338 126.635 1 58.83 ? C3' AGS 800 G 1 HETATM 18 O O3' AGS . . . T 3 144.809 141.61 126.435 1 58.83 ? O3' AGS 800 G 1 HETATM 19 C C2' AGS . . . T 3 146.835 140.475 127.182 1 58.83 ? C2' AGS 800 G 1 HETATM 20 O O2' AGS . . . T 3 147.344 141.782 126.954 1 58.83 ? O2' AGS 800 G 1 HETATM 21 C C1' AGS . . . T 3 146.661 140.23 128.674 1 58.83 ? C1' AGS 800 G 1 HETATM 22 N N9 AGS . . . T 3 147.808 139.6 129.305 1 58.83 ? N9 AGS 800 G 1 HETATM 23 C C8 AGS . . . T 3 147.789 138.513 130.136 1 58.83 ? C8 AGS 800 G 1 HETATM 24 N N7 AGS . . . T 3 148.971 138.146 130.563 1 58.83 ? N7 AGS 800 G 1 HETATM 25 C C5 AGS . . . T 3 149.829 139.053 129.967 1 58.83 ? C5 AGS 800 G 1 HETATM 26 C C6 AGS . . . T 3 151.225 139.208 130.017 1 58.83 ? C6 AGS 800 G 1 HETATM 27 N N6 AGS . . . T 3 152.031 138.419 130.728 1 58.83 ? N6 AGS 800 G 1 HETATM 28 N N1 AGS . . . T 3 151.769 140.218 129.307 1 58.83 ? N1 AGS 800 G 1 HETATM 29 C C2 AGS . . . T 3 150.964 141.011 128.596 1 58.83 ? C2 AGS 800 G 1 HETATM 30 N N3 AGS . . . T 3 149.637 140.962 128.472 1 58.83 ? N3 AGS 800 G 1 HETATM 31 C C4 AGS . . . T 3 149.129 139.954 129.186 1 58.83 ? C4 AGS 800 G 1 HETATM 32 H HOG2 AGS . . . T 3 141.024 132.508 128.565 1 58.83 ? HOG2 AGS 800 G 1 HETATM 33 H H21 AGS . . . T 3 140.515 132.939 131.737 1 58.83 ? H21 AGS 800 G 1 HETATM 34 H "H5'1" AGS . . . T 3 144.016 138.154 126.316 1 58.83 ? "H5'1" AGS 800 G 1 HETATM 35 H "H5'2" AGS . . . T 3 143.281 138.045 127.716 1 58.83 ? "H5'2" AGS 800 G 1 HETATM 36 H H4' AGS . . . T 3 143.926 140.079 128.011 1 58.83 ? H4' AGS 800 G 1 HETATM 37 H H3' AGS . . . T 3 145.436 139.85 125.799 1 58.83 ? H3' AGS 800 G 1 HETATM 38 H H2' AGS . . . T 3 147.42 139.804 126.802 1 58.83 ? H2' AGS 800 G 1 HETATM 39 H HO2' AGS . . . T 3 148.169 141.728 126.635 1 58.83 ? HO2' AGS 800 G 1 HETATM 40 H H1' AGS . . . T 3 146.465 141.072 129.115 1 58.83 ? H1' AGS 800 G 1 HETATM 41 H H8 AGS . . . T 3 146.973 138.057 130.391 1 58.83 ? H8 AGS 800 G 1 HETATM 42 H HN61 AGS . . . T 3 152.26 138.653 131.577 1 58.83 ? HN61 AGS 800 G 1 HETATM 43 H HN62 AGS . . . T 3 152.352 137.648 130.368 1 58.83 ? HN62 AGS 800 G 1 HETATM 44 H H2 AGS . . . T 3 151.404 141.723 128.103 1 58.83 ? H2 AGS 800 G 1 # _model_server_stats.io_time_ms 115 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 43 _model_server_stats.query_time_ms 282 _model_server_stats.encode_time_ms 26 _model_server_stats.element_count 44 #