data_6UKY # _model_server_result.job_id 8G_VOgnm4Aw326leXUKHeg _model_server_result.datetime_utc '2024-10-19 03:55:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 6uky # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 6UKY # _exptl.entry_id 6UKY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 568.658 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '4-(6-{3-[2-(3-carboxypropanoyl)-6-methoxy-1-benzothiophen-4-yl]propyl}-5-methoxy-1-benzothiophen-2-yl)-4-oxobutanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 6UKY _cell.length_a 110.77 _cell.length_b 110.77 _cell.length_c 35.84 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 6UKY _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_555 y,x,-z 0 1 0 1 0 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H28 O8 S2' _chem_comp.formula_weight 568.658 _chem_comp.id QBD _chem_comp.mon_nstd_flag . _chem_comp.name '4-(6-{3-[2-(3-carboxypropanoyl)-6-methoxy-1-benzothiophen-4-yl]propyl}-5-methoxy-1-benzothiophen-2-yl)-4-oxobutanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O6 C23 QBD doub 277 n n C7 O QBD sing 278 n n O C6 QBD sing 279 n n O5 C23 QBD sing 280 n n C23 C22 QBD sing 281 n n C8 C6 QBD doub 282 n y C8 C9 QBD sing 283 n y C6 C5 QBD sing 284 n y S C9 QBD sing 285 n y S C10 QBD sing 286 n y C9 C16 QBD doub 287 n y C22 C21 QBD sing 288 n n C5 C4 QBD doub 289 n y C16 C4 QBD sing 290 n y C16 C15 QBD sing 291 n y C10 C11 QBD sing 292 n n C10 C15 QBD doub 293 n y C4 C3 QBD sing 294 n n O1 C11 QBD doub 295 n n C11 C12 QBD sing 296 n n C21 C20 QBD sing 297 n n C3 C2 QBD sing 298 n n C12 C13 QBD sing 299 n n C28 O7 QBD sing 300 n n C20 O4 QBD doub 301 n n C20 C19 QBD sing 302 n n C24 C19 QBD doub 303 n y C24 C25 QBD sing 304 n y C19 S1 QBD sing 305 n y C26 C25 QBD doub 306 n y C26 C27 QBD sing 307 n y C25 C18 QBD sing 308 n y C13 C14 QBD sing 309 n n O7 C27 QBD sing 310 n n C27 C QBD doub 311 n y C18 S1 QBD sing 312 n y C18 C17 QBD doub 313 n y C2 C1 QBD sing 314 n n C17 C QBD sing 315 n y C C1 QBD sing 316 n n C14 O2 QBD doub 317 n n C14 O3 QBD sing 318 n n O5 H1 QBD sing 319 n n C22 H2 QBD sing 320 n n C22 H3 QBD sing 321 n n C21 H4 QBD sing 322 n n C21 H5 QBD sing 323 n n C24 H6 QBD sing 324 n n C17 H7 QBD sing 325 n n C26 H8 QBD sing 326 n n C28 H9 QBD sing 327 n n C28 H10 QBD sing 328 n n C28 H11 QBD sing 329 n n C1 H12 QBD sing 330 n n C1 H13 QBD sing 331 n n C2 H14 QBD sing 332 n n C2 H15 QBD sing 333 n n C3 H16 QBD sing 334 n n C3 H17 QBD sing 335 n n C8 H18 QBD sing 336 n n C7 H19 QBD sing 337 n n C7 H20 QBD sing 338 n n C7 H21 QBD sing 339 n n C5 H22 QBD sing 340 n n C15 H23 QBD sing 341 n n C12 H24 QBD sing 342 n n C12 H25 QBD sing 343 n n C13 H26 QBD sing 344 n n C13 H27 QBD sing 345 n n O3 H28 QBD sing 346 n n # _atom_sites.entry_id 6UKY _atom_sites.fract_transf_matrix[1][1] 0.009028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009028 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.027902 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 QBD A 1 401 1 QBD UNL . C 3 HOH A 1 501 22 HOH HOH . C 3 HOH A 2 502 55 HOH HOH . C 3 HOH A 3 503 1 HOH HOH . C 3 HOH A 4 504 35 HOH HOH . C 3 HOH A 5 505 39 HOH HOH . C 3 HOH A 6 506 8 HOH HOH . C 3 HOH A 7 507 7 HOH HOH . C 3 HOH A 8 508 17 HOH HOH . C 3 HOH A 9 509 49 HOH HOH . C 3 HOH A 10 510 6 HOH HOH . C 3 HOH A 11 511 24 HOH HOH . C 3 HOH A 12 512 83 HOH HOH . C 3 HOH A 13 513 20 HOH HOH . C 3 HOH A 14 514 30 HOH HOH . C 3 HOH A 15 515 18 HOH HOH . C 3 HOH A 16 516 95 HOH HOH . C 3 HOH A 17 517 27 HOH HOH . C 3 HOH A 18 518 119 HOH HOH . C 3 HOH A 19 519 40 HOH HOH . C 3 HOH A 20 520 44 HOH HOH . C 3 HOH A 21 521 23 HOH HOH . C 3 HOH A 22 522 97 HOH HOH . C 3 HOH A 23 523 50 HOH HOH . C 3 HOH A 24 524 3 HOH HOH . C 3 HOH A 25 525 102 HOH HOH . C 3 HOH A 26 526 89 HOH HOH . C 3 HOH A 27 527 121 HOH HOH . C 3 HOH A 28 528 9 HOH HOH . C 3 HOH A 29 529 84 HOH HOH . C 3 HOH A 30 530 87 HOH HOH . C 3 HOH A 31 531 42 HOH HOH . C 3 HOH A 32 532 45 HOH HOH . C 3 HOH A 33 533 15 HOH HOH . C 3 HOH A 34 534 126 HOH HOH . C 3 HOH A 35 535 4 HOH HOH . C 3 HOH A 36 536 14 HOH HOH . C 3 HOH A 37 537 60 HOH HOH . C 3 HOH A 38 538 47 HOH HOH . C 3 HOH A 39 539 110 HOH HOH . C 3 HOH A 40 540 136 HOH HOH . C 3 HOH A 41 541 12 HOH HOH . C 3 HOH A 42 542 70 HOH HOH . C 3 HOH A 43 543 11 HOH HOH . C 3 HOH A 44 544 64 HOH HOH . C 3 HOH A 45 545 43 HOH HOH . C 3 HOH A 46 546 16 HOH HOH . C 3 HOH A 47 547 21 HOH HOH . C 3 HOH A 48 548 77 HOH HOH . C 3 HOH A 49 549 76 HOH HOH . C 3 HOH A 50 550 63 HOH HOH . C 3 HOH A 51 551 65 HOH HOH . C 3 HOH A 52 552 68 HOH HOH . C 3 HOH A 53 553 36 HOH HOH . C 3 HOH A 54 554 58 HOH HOH . C 3 HOH A 55 555 54 HOH HOH . C 3 HOH A 56 556 94 HOH HOH . C 3 HOH A 57 557 26 HOH HOH . C 3 HOH A 58 558 134 HOH HOH . C 3 HOH A 59 559 5 HOH HOH . C 3 HOH A 60 560 25 HOH HOH . C 3 HOH A 61 561 72 HOH HOH . C 3 HOH A 62 562 31 HOH HOH . C 3 HOH A 63 563 61 HOH HOH . C 3 HOH A 64 564 120 HOH HOH . C 3 HOH A 65 565 100 HOH HOH . C 3 HOH A 66 566 86 HOH HOH . C 3 HOH A 67 567 46 HOH HOH . C 3 HOH A 68 568 80 HOH HOH . C 3 HOH A 69 569 93 HOH HOH . C 3 HOH A 70 570 66 HOH HOH . C 3 HOH A 71 571 82 HOH HOH . C 3 HOH A 72 572 10 HOH HOH . C 3 HOH A 73 573 81 HOH HOH . C 3 HOH A 74 574 51 HOH HOH . C 3 HOH A 75 575 2 HOH HOH . C 3 HOH A 76 576 122 HOH HOH . C 3 HOH A 77 577 92 HOH HOH . C 3 HOH A 78 578 75 HOH HOH . C 3 HOH A 79 579 32 HOH HOH . C 3 HOH A 80 580 112 HOH HOH . C 3 HOH A 81 581 79 HOH HOH . C 3 HOH A 82 582 71 HOH HOH . C 3 HOH A 83 583 108 HOH HOH . C 3 HOH A 84 584 33 HOH HOH . C 3 HOH A 85 585 88 HOH HOH . C 3 HOH A 86 586 41 HOH HOH . C 3 HOH A 87 587 34 HOH HOH . C 3 HOH A 88 588 28 HOH HOH . C 3 HOH A 89 589 62 HOH HOH . C 3 HOH A 90 590 37 HOH HOH . C 3 HOH A 91 591 109 HOH HOH . C 3 HOH A 92 592 13 HOH HOH . C 3 HOH A 93 593 56 HOH HOH . C 3 HOH A 94 594 57 HOH HOH . C 3 HOH A 95 595 59 HOH HOH . C 3 HOH A 96 596 107 HOH HOH . C 3 HOH A 97 597 38 HOH HOH . C 3 HOH A 98 598 19 HOH HOH . C 3 HOH A 99 599 103 HOH HOH . C 3 HOH A 100 600 113 HOH HOH . C 3 HOH A 101 601 74 HOH HOH . C 3 HOH A 102 602 105 HOH HOH . C 3 HOH A 103 603 78 HOH HOH . C 3 HOH A 104 604 85 HOH HOH . C 3 HOH A 105 605 73 HOH HOH . C 3 HOH A 106 606 99 HOH HOH . C 3 HOH A 107 607 117 HOH HOH . C 3 HOH A 108 608 104 HOH HOH . C 3 HOH A 109 609 130 HOH HOH . C 3 HOH A 110 610 116 HOH HOH . C 3 HOH A 111 611 135 HOH HOH . C 3 HOH A 112 612 129 HOH HOH . C 3 HOH A 113 613 131 HOH HOH . C 3 HOH A 114 614 123 HOH HOH . C 3 HOH A 115 615 101 HOH HOH . C 3 HOH A 116 616 125 HOH HOH . C 3 HOH A 117 617 128 HOH HOH . C 3 HOH A 118 618 67 HOH HOH . C 3 HOH A 119 619 29 HOH HOH . C 3 HOH A 120 620 53 HOH HOH . C 3 HOH A 121 621 90 HOH HOH . C 3 HOH A 122 622 106 HOH HOH . C 3 HOH A 123 623 118 HOH HOH . C 3 HOH A 124 624 127 HOH HOH . C 3 HOH A 125 625 98 HOH HOH . C 3 HOH A 126 626 96 HOH HOH . C 3 HOH A 127 627 115 HOH HOH . C 3 HOH A 128 628 132 HOH HOH . C 3 HOH A 129 629 52 HOH HOH . C 3 HOH A 130 630 133 HOH HOH . C 3 HOH A 131 631 124 HOH HOH . C 3 HOH A 132 632 111 HOH HOH . C 3 HOH A 133 633 91 HOH HOH . C 3 HOH A 134 634 48 HOH HOH . C 3 HOH A 135 635 69 HOH HOH . C 3 HOH A 136 636 114 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O5 QBD . . . B 2 -21.671 -16.795 -2.49 0.5 25.68 ? O5 QBD 401 A 1 HETATM 2 C C23 QBD . . . B 2 -20.762 -15.86 -2.405 0.5 25.36 ? C23 QBD 401 A 1 HETATM 3 O O6 QBD . . . B 2 -19.751 -15.854 -3.062 0.5 27.11 ? O6 QBD 401 A 1 HETATM 4 C C22 QBD . . . B 2 -21.095 -14.801 -1.402 0.5 23.38 ? C22 QBD 401 A 1 HETATM 5 C C21 QBD . . . B 2 -21.53 -15.364 -0.063 0.5 22.44 ? C21 QBD 401 A 1 HETATM 6 C C20 QBD . . . B 2 -20.526 -16.32 0.517 0.5 23.37 ? C20 QBD 401 A 1 HETATM 7 O O4 QBD . . . B 2 -19.336 -16.017 0.638 0.5 24.49 ? O4 QBD 401 A 1 HETATM 8 C C19 QBD . . . B 2 -21 -17.642 0.876 0.5 22.85 ? C19 QBD 401 A 1 HETATM 9 S S1 QBD . . . B 2 -19.845 -18.779 1.519 0.5 23.23 ? S1 QBD 401 A 1 HETATM 10 C C24 QBD . . . B 2 -22.218 -18.214 0.669 0.5 21.6 ? C24 QBD 401 A 1 HETATM 11 C C25 QBD . . . B 2 -22.287 -19.603 1.029 0.5 21.01 ? C25 QBD 401 A 1 HETATM 12 C C18 QBD . . . B 2 -21.043 -20.04 1.514 0.5 20.12 ? C18 QBD 401 A 1 HETATM 13 C C17 QBD . . . B 2 -20.853 -21.345 1.942 0.5 20.4 ? C17 QBD 401 A 1 HETATM 14 C C26 QBD . . . B 2 -23.336 -20.503 0.987 0.5 20 ? C26 QBD 401 A 1 HETATM 15 C C27 QBD . . . B 2 -23.16 -21.803 1.426 0.5 21.13 ? C27 QBD 401 A 1 HETATM 16 O O7 QBD . . . B 2 -24.134 -22.755 1.358 0.5 21.16 ? O7 QBD 401 A 1 HETATM 17 C C28 QBD . . . B 2 -25.183 -22.552 0.411 0.5 24.16 ? C28 QBD 401 A 1 HETATM 18 C C QBD . . . B 2 -21.93 -22.234 1.947 0.5 20.66 ? C QBD 401 A 1 HETATM 19 C C1 QBD . . . B 2 -21.684 -23.683 2.296 0.5 20.86 ? C1 QBD 401 A 1 HETATM 20 C C2 QBD . . . B 2 -20.476 -24.222 1.532 0.5 19.41 ? C2 QBD 401 A 1 HETATM 21 C C3 QBD . . . B 2 -20.627 -24.369 0.01 0.5 15.04 ? C3 QBD 401 A 1 HETATM 22 C C4 QBD . . . B 2 -20.876 -23.093 -0.757 0.5 16.52 ? C4 QBD 401 A 1 HETATM 23 C C16 QBD . . . B 2 -19.866 -22.135 -0.947 0.5 17.07 ? C16 QBD 401 A 1 HETATM 24 C C9 QBD . . . B 2 -20.171 -20.976 -1.676 0.5 15.62 ? C9 QBD 401 A 1 HETATM 25 C C8 QBD . . . B 2 -21.424 -20.743 -2.228 0.5 15.79 ? C8 QBD 401 A 1 HETATM 26 C C6 QBD . . . B 2 -22.382 -21.73 -2.08 0.5 17.15 ? C6 QBD 401 A 1 HETATM 27 O O QBD . . . B 2 -23.619 -21.48 -2.61 0.5 20.18 ? O QBD 401 A 1 HETATM 28 C C7 QBD . . . B 2 -23.92 -20.13 -2.96 0.5 16.48 ? C7 QBD 401 A 1 HETATM 29 C C5 QBD . . . B 2 -22.122 -22.885 -1.354 0.5 18.5 ? C5 QBD 401 A 1 HETATM 30 C C15 QBD . . . B 2 -18.506 -22.118 -0.489 0.5 19.27 ? C15 QBD 401 A 1 HETATM 31 C C10 QBD . . . B 2 -17.82 -21.005 -0.879 0.5 20.04 ? C10 QBD 401 A 1 HETATM 32 S S QBD . . . B 2 -18.783 -19.942 -1.831 0.5 19.26 ? S QBD 401 A 1 HETATM 33 C C11 QBD . . . B 2 -16.478 -20.551 -0.523 0.5 20.83 ? C11 QBD 401 A 1 HETATM 34 O O1 QBD . . . B 2 -16.152 -19.368 -0.667 0.5 22.16 ? O1 QBD 401 A 1 HETATM 35 C C12 QBD . . . B 2 -15.528 -21.561 0.057 0.5 19.52 ? C12 QBD 401 A 1 HETATM 36 C C13 QBD . . . B 2 -14.871 -21.075 1.334 0.5 20.24 ? C13 QBD 401 A 1 HETATM 37 C C14 QBD . . . B 2 -15.862 -20.76 2.41 0.5 21.87 ? C14 QBD 401 A 1 HETATM 38 O O2 QBD . . . B 2 -16.773 -21.684 2.549 0.5 21.6 ? O2 QBD 401 A 1 HETATM 39 O O3 QBD . . . B 2 -15.835 -19.751 3.068 0.5 24.11 ? O3 QBD 401 A 1 # _model_server_stats.io_time_ms 73 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 336 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 39 #